Inbreast:: Technical Report
Inbreast:: Technical Report
Inbreast:: Technical Report
INbreast:
Toward a Full-field Digital Mammographic Database
Rationale and Objectives: Computer-aided detection and diagnosis (CAD) systems have been developed in the past two decades to
assist radiologists in the detection and diagnosis of lesions seen on breast imaging exams, thus providing a second opinion. Mammo-
graphic databases play an important role in the development of algorithms aiming at the detection and diagnosis of mammary lesions.
However, available databases often do not take into consideration all the requirements needed for research and study purposes. This
article aims to present and detail a new mammographic database.
~o [CHSJ],
Materials and Methods: Images were acquired at a breast center located in a university hospital (Centro Hospitalar de S. Joa
Breast Centre, Porto) with the permission of the Portuguese National Committee of Data Protection and Hospital’s Ethics Committee.
MammoNovation Siemens full-field digital mammography, with a solid-state detector of amorphous selenium was used.
Results: The new database—INbreast—has a total of 115 cases (410 images) from which 90 cases are from women with both breasts
affected (four images per case) and 25 cases are from mastectomy patients (two images per case). Several types of lesions (masses, calci-
fications, asymmetries, and distortions) were included. Accurate contours made by specialists are also provided in XML format.
Conclusion: The strengths of the actually presented database—INbreast—relies on the fact that it was built with full-field digital mammo-
grams (in opposition to digitized mammograms), it presents a wide variability of cases, and is made publicly available together with precise
annotations. We believe that this database can be a reference for future works centered or related to breast cancer imaging.
Key Words: Mammographic database; CAD; computer-aided detection; computer-aided diagnosis.
ªAUR, 2012
A
ccording to the World Health Organization, breast mammographic examinations are performed annually on
cancer was responsible for approximately 519,000 asymptomatic women to detect early, clinically unsuspected
deaths in 2004: 16% of all cancer incidence among lesions. The age at which mass screening mammography is
women. In 2008, it was the most common form of cancer generally recommended in the United States is 40 (5). In
and cancer related death in women worldwide (1). In Portugal, Europe, screening at 40 to 50 years old is still not consensual
1500 women die every year from breast cancer, whereas in the (6). However, in women with genetic mutations or significant
European Union it is responsible for one in every six deaths family history of breast cancer, screening should start earlier,
from cancer in women (2). For this reason, early detection usually 10 years earlier than the age of diagnosis of the youngest
and diagnosis of breast cancer is essential to decrease its associ- relative (never before 25) (5).
ated mortality rate. Therefore, mass screening is recommended Mammography comprehends the recording of two views
by the medical community (2,3). for each breast: the craniocaudal (CC) view, which is a top
X-ray mammography is currently considered the best to bottom view, and a mediolateral oblique (MLO) view,
imaging method for breast cancer screening and the most which is a side view (Fig 1) (6). The images can be acquired
effective tool for early detection of this disease (4). Screening on x-ray film, such as a film-screen mammogram, or in digital
format, such as with digital mammography (full-field digital
mammography [FFDM] and computed radiography) (7).
Acad Radiol 2012; 19:236–248 When radiologists examine mammograms, they look for
From the Faculdade de Medicina, Alameda Prof. Herna ^ni Monteiro, specific abnormalities (8). The most common findings seen
Universidade do Porto, 4200-319, Porto, Portugal (I.C.M., M.J.C.); Hospital
de Sa ~o Joa~o, Porto, Portugal (I.C.M., A.C.); INESC Porto, Porto, Portugal on mammography are masses, calcifications, architectural
de
(I.C.M., I.A., I.D., M.J.C., J.S.C.); Escola Superior de Tecnologia da Sau distortion of breast tissue, and asymmetries when comparing
do Porto, Polite cnico do Porto, Portugal (I.C.M.); Faculdade de Engenharia,
Universidade do Porto, Portugal (I.D., J.S.C.); Champalimaud Cancer
the two breasts and the two views. To standardize the termi-
Center, Breast Unit, Lisbon, Portugal (M.J.C.). Received May 4, 2011; nology of the mammographic report, the assessment of find-
accepted September 26, 2011. Funded by the Portuguese Agency for ings and the recommendation of action to be taken, the
Innovation (ADI), through project QREN reference 3472 ‘‘Semantic PACS.’’
We acknowledge the participation of Emılio de Azevedo Campos on the American College of Radiology (ACR) has developed the
person of Pedro Cardoso. We also thank Doctor Francisco Pimentel for Breast Imaging Reporting and Data System (BI-RADS) scale
helpful scientific comments. Address correspondence to: I.C.M. e-mail:
icm@estsp.ipp.pt
(9). Based on level of suspicion, the previously mentioned
ªAUR, 2012
lesions can be placed into one of six BI-RADS categories:
doi:10.1016/j.acra.2011.09.014 category 0, exam is not conclusive; category 1, no findings;
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category 2, benign findings; category 3, probably benign find- lesions. To decrease this rate, computer-aided detection and
ings; category 4, suspicious findings; category 5, a high prob- diagnosis (CAD) systems have been developed in the past
ability of malignancy; and category 6, proved cancer (Table 1). two decades to assist the radiologists in the interpretation of
In case of categories 4 and 5, a biopsy is needed to exclude or the medical images (14,15). To design, test, and tune such
confirm malignancy (10). Other important characteristic computational systems, researchers demand a large number
referred by the ACR is the breast composition tissue, related of mammograms (16). These datasets need to be digital, so
to the breast density shown in x-rays. There are four cate- if the images are acquired on x-ray film, they have to be digi-
gories ranging from 1, for low density (fatty tissue), to 4, for tized (15). Therefore, mammographic databases play an
very high density (dense tissue) (11). important role in the development of algorithms aiming at
Several studies (8,12,13) concluded that detection of detecting and diagnosing lesions. They are also important to
suspicious findings by radiologists is a repetitive and allow comparison of results from different studies (17–19).
fatiguing task, leading to a 10%–30% rate of undetected A different application is the use of database images
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MOREIRA ET AL Academic Radiology, Vol 19, No 2, February 2012
TABLE 1. Breast Imaging Reporting and Data System unless it is a case from a patient with one breast only from
Assessment Categories previous mastectomy. Image acquisition should be adequate
in terms of patient positioning, x-ray exposure, and with an
Category Description
absence of image blur due to patient motion.
0 Needs additional imaging evaluation and/or prior
mammograms for comparison
Ground Truth
1 Negative
2 Benign finding(s) Biopsy proof for all cases should be available. Annotations
3 Probably benign finding(s). Short-interval follow-up should include the ‘‘ground truth’’ (GT) concerning
is suggested. cytology/histology for all cases, the location and boundaries
4 Suspicious anomaly. Biopsy should be considered.
of the lesion with the outline marking performed by an
5 Highly suggestive of malignancy. Appropriate
imaging specialist.
action should be taken.
6 Biopsy proven malignancy
Associated Information
for teaching and training students in this specific medical Clinical history such as age, family history, and previous biop-
field. sies can be useful for studying subpopulations of women
The common practice in the development of CAD algo- (eg, women <50 years of age), and it may improve the perfor-
rithms has been the use of private sets of mammograms to mance of a CAD scheme by incorporating nonradiographic
design and evaluate the performance of the algorithms. This information. Additional information such as breast density
impairs the fair judgment of the quality of the individual (preferably given by a standard like ACR) and BI-RADS
work and the comparison of the accuracy of different methods classification are also mandatory.
because performance is database-dependent. Good results can
have been obtained in databases with ‘‘easy’’ cases, whereas Organization of Database
bad accuracies may have been achieved by using ‘‘difficult’’
databases (16,18,20). Public available databases could A specific file format for digital mammograms does not exist.
provide a common ground for researchers to develop, test, Medical images are usually saved in the DICOM (Digital
and compare their methods. However, to be effective, Imaging and Communications in Medicine) format that
certain criteria should be met by the database. gathers not only the image but also some related metadata
This article aims to present a new mammographic research (21). A division of the images on training and test sets should
database originated at Centro Hospitalar de S. Jo~ao (CHSJ) at also be suggested. By doing so, different methods can be
Porto, Portugal, the INbreast database with the purpose of compared.
developing CAD methods and to overcome some limitations
of existent databases. Details of the design of this database will Distribution of Database
be presented in this article as follows: requirements of digital
The database should be available, preferentially over the
mammographic databases, existent available databases,
Internet. Continuous user support is also indispensable.
description of INbreast database, description of the findings
in the database, proposal for a methodology for performance
evaluation, discussion, and conclusion. AVAILABLE DATABASES
There are several image databases, some public and some
REQUIREMENTS FOR A DIGITAL restricted to individual groups, which are used by researchers
MAMMOGRAPHIC DATABASE in the breast cancer area. However, these often do not meet all
the requirements needed for a study (16–18,20,22–24).
According to previous studies (16,18), mammographic
databases should take into consideration the following
The Mammographic Image Analysis Society Digital
requirements. Mammogram Database
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ACR, American College of Radiology; CC, craniocaudal; DDSM, Digital Database for Screening Mammography; LJPEG, lossless JPEG (Joint
Photographic Experts Group); MIAS, Mammographic Image Analysis Society Digital Mammogram Database; MLO, mediolateral oblique; PGM,
portable gray map; ROI, region of interest; TIFF, tagged image file format; UK, United Kingdom; USA, United States of America.
masses but, in Rangayyan’s article (24), the author noticed that information included is the age, but it has breast density
there was an unexpected elevated number of benign findings annotations (ACR) and BI-RADS annotations.
in relation to the malign ones. It contains breast density infor- Image annotations include pixel level boundary of the find-
mation, but not classified according to the ACR standards. ings. There are several articles whose authors got satisfactory
However, because of the increasing usage of the ACR classi- results using this type of annotation (32–35). However, as
fication, it was decided to classify the set of mammograms noted in other studies (8,22,23), they are not adequate for
according to that standard (26). the validation of segmentation algorithms because the
MIAS annotations consist in the center and radius of a circle precision is not good enough.
around the area of interest. These types of annotations are not
considered sufficient for some studies, as the one done by The BancoWeb LAPIMO Database
Oliver et al (20), where all circumscribed and spiculated
lesions had to be manually segmented. Another drawback is A more recent database is the BancoWeb LAPIMO Database
the resolution to which the images have been digitized, which (36). After registration, users can gain access and contribute to
makes MIAS unsuitable for experiments on detection of the database at http://lapimo.sel.eesc.usp.br/bancoweb/.
microcalcifications (MCCs) (27). However, in previous It has 320 cases, 1473 images with MLO, CC, and magni-
work (28), the authors achieved a 100% detection rate of fication views, with normal images, and images with benign
MCCs by applying two different detection methods. Llobet and malign findings. Background patient information along
(29) considered that, in the case of calcifications, the GT with BI-RADS annotations is available. Annotations exist in
region contains more healthy tissue than affected tissue. For only some of the images, in the form of a region of interest
this reason, calcifications were not included in his study. (ROI), but all have textual description of the findings. We
did not find any published work related to this database,
The Digital Database for Screening Mammography probably because it is a recent project. A summary of these
databases can be found in Table 2.
The most used database is the Digital Database for Screening Antoniou (19) refers to a web-accessible mammographic
Mammography (DDSM) (30), and it is accessible at http:// database, called MIRAcle DB, which is still in an experi-
marathon.csee.usf.edu/Mammography/Database.html, but mental stage and became available online in the summer of
is also no longer supported. It is the largest public database, 2011. This database, as well as others, is cited in the literature.
with 2620 cases including two images from each breast However, as can be seen in Table 3, most of them are not
(MLO and CC), for a total of 10,480 images, with all types available and consequently details could not be found.
of findings from normal images to images with benign and There are also two grids that are a combination of images
malign lesions. Some of the cases in this database were from multiple resources, which are available to the user as
collected from the Nijmegen Database (31). The only patient a single database, but can be stored in several servers.
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TABLE 3. Other Databases Referred in Literature
Nijmegen (37) Trueta (38) IRMA (39) MIRAcle (19) LLNL (39) laga (38)
Ma NDMA (40)
ACR, American College of Radiology; BI-RADS, Breast Imaging Reporting and Data System; CC, craniocaudal; DICOM, Digital Imaging and Communications in Medicine; FFDM, full-field
digital mammography; ICS, Image Cytometry Standard; IRMA, Image Retrieval in Medical Applications; LLNL, Lawrence Livermore National Laboratory; MCC, microcalcification; MLO, medio-
lateral oblique; NDMA, National Digital Medical Archive.
Academic Radiology, Vol 19, No 2, February 2012 INBREAST: TOWARD AN FFDM DATABASE
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the finding was made. An ellipse enclosing the entire cluster Center</key> followed by a the coordinates of the point
was adopted to annotate the clusters of MCCs (Fig 5a). in the centre of the ROI, the tag <key>Name</key> fol-
When the mass is spiculated, besides a contour of the denser lowed by the type of finding (mass, calcification, distortion,
region, we added an ellipse enclosing all the spicules spiculated region) and some other general information’s
(Fig 6b). about the ROI;
The annotations were saved in XML format with the After the general information, for each ROI, a list of
following structure. contour points is presented between the tags <array> and
</array>.
A standard header with the XML version and type of
encoding information; Information regarding patient’s age at the time of image
The tag <key>NumberOfROIs</key> followed by an acquisition, family history, ACR breast density annotation
integer that indicates the number of annotations present and BI-RADS classification is also provided (see Fig 8 for
in the image; the distribution of BI-RADS classification on the database).
For each ROI, there is a tag <key>Area</key> followed A biopsy result for BI RADS 3, 4, 5, and 6 cases is also dis-
by the value of the area of the current ROI, the tag <key> played whenever performed. The remaining cases were
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considered benign and therefore a biopsy was therefore not With the precise annotations in INbreast, future studies can
performed. Consequently, a biopsy was performed on be developed that cannot be performed with the currently
56 cases, of which 11 were found to be benign and the available databases. Shape information is highly indicative of
remaining 45 were malignant. The overall distribution of the malignancy of a mass (45) and therefore automatic shape
benign/malignant cases is shown in Figure 8. assessment in the mammogram in often pursued. However,
The database is available at http://medicalresearch. the coarse-grained annotation of current databases does not
inescporto.pt/breastresearch/GetINbreastDatabase.html. A allow a proper validation of the discoveries. Also, MCC
division of the database into train and test sets is also suggested. grouping and distribution is the mammogram is important
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Figure 9. Distribution of density across the Breast Imaging Reporting and Data System scale.
Figure 10. Normalized distribution of masses across the Breast Figure 12. Normalized distribution of calcifications across the
Imaging Reporting and Data System scale. Breast Imaging Reporting and Data System scale.
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To evaluate the miss detection rate and false-positive rate, We do acknowledge that not all images in the database
we propose to start by computing the distance between each respect all quality assessment criteria, because the examination
reference MCC and each actually detected MCC; then we technique and patient related factors have some limitations
solve the matching problem on the resulting bipartite graph (eg, previous surgery). Therefore, the database reflects
by minimizing the assignment cost (= distance). Only pairs a wide variability of cases and conveys the reality of the routine
with average error-distance below a certain threshold (T1) work of a radiographer.
are assumed correctly matched (the other pairs are assumed Despite the fact that our database has a limited number of
to originate from a false-positive staff line being matched to images, we strongly believe that it is more important to have
an undetected true staff line and are therefore unmatched). imaging diversity, than a large number of similar images.
Now the two metrics result as the number of unmatched Zheng et al (47) claim that, in the development of CAD
MCC (false positive) and unmatched reference MCC (missed systems, including difficult cases leads to better results than
to detect). It should be noted that these metrics only measure simply increasing the size of the database with easy masses.
whether MCC are found, not how good the match is. Nevertheless, increasing the size of the database will be a future
The detection threshold T1 should reflect our imprecision phase of this research.
acceptance in the detection process. A final remark is related Annotation is a subjective, tedious, and extremely time-
to the notion of distance between two MCCs. Because consuming task. Specialists are needed to perform the annota-
MCCs are very small structures, it is a valid assumption to treat tion, which can turn into an extremely difficult and costly task.
them as singular points, their centroids. The obvious choice of That is probably the main reason why the currently available
embracing the Euclidean distance between the centroids for databases do not have accurate contours. In the present
the previously described global optimization can lead to work, there was a big concern in making precise annotations.
unnatural results (see Fig 14). However, only two specialists were involved in the process. For
The insight is that because high errors penalize a lot the that reason, the project will therefore integrate in the database
global optimization, the final correspondence result tries to additional specialists contributions to continuously improve
avoid such solutions. A workaround is to saturate the the database and annotations quality.
Euclidean distance:
CONCLUSIONS AND FUTURE WORK
d ðreference MCC; detected MCCÞ
¼ minðT2; d ½reference MCC; detected MCCÞ We consider that this project has the potential to be a unique
work in the field of mammographic databases. Notwithstanding
where T2 is a saturation value (an alternative approach would the importance of the digitized databases, technological
be to use a sigmoid function to compress the Euclidean advances in image acquisition devices for radiology, together
distance). The motivation for this saturation process is that with the ubiquity of the computer, led to the development of
erring by T2 (eg, 100) is the same as erring by any value above the FFDM, where the digitalization-related loss of information
T2 (eg, 700). is absent. Thus, the development of new databases that cover
such technological advancements is a crucial step to develop
future CADs.
DISCUSSION
With this database, we aim at increasing available
Having in attention the actual state-of-the-art on breast cancer resources in the breast imaging diagnostic field. This
research, FFDM databases are the natural step in the evolution updated set of images can be used not only for research
of mammographic databases. As noted by Oliver and purposes, but also in medical practice, for instance, in
colleagues (20), there is no public available database made a teaching environment. Within our team, we are interested
with digital mammograms. In this work, we address this gap in the development of a CAD system. Some MCCs and
by proposing a FFDM database with a wide variety of findings. mass detection methods are currently being implemented
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and tested, and classification methodologies are also under 18. Nishikawa RM. Development of a common database for digital mammog-
raphy research. Chicago, IL: University of Chicago, 1996.
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Careful annotation is considered as an advantage over the cated to combined training and evaluation of radiologists and machines.
currently available databases. This can motivate computer 9th International Conference on Information Technology and Applications
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