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ANOVA, T-Test and Other Statistical Tests With Python

This document discusses how to perform various statistical tests like ANOVA, t-tests, and MANOVA using Python. It shows code examples for implementing one-way ANOVA, repeated measures ANOVA, independent t-tests, and MANOVA using libraries like SciPy, Pingouin, and Statsmodels. The examples use iris flower data to demonstrate how to conduct these tests and analyze differences between groups.

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85 views11 pages

ANOVA, T-Test and Other Statistical Tests With Python

This document discusses how to perform various statistical tests like ANOVA, t-tests, and MANOVA using Python. It shows code examples for implementing one-way ANOVA, repeated measures ANOVA, independent t-tests, and MANOVA using libraries like SciPy, Pingouin, and Statsmodels. The examples use iris flower data to demonstrate how to conduct these tests and analyze differences between groups.

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ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

1 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

2 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

3 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

4 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

5 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

6 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

from scipy import stats


import pandas as pd

# import the data


df= pd.read_csv("Iris_Data.csv")
setosa = df[(df['species'] == 'Iris-setosa')]
versicolor = df[(df['species'] == 'Iris-versicolor')]

# homogeneity
stats.levene(setosa['sepal_width'],
versicolor['sepal_width'])

# Shapiro-Wilk test for normality


stats.shapiro(setosa['sepal_width'])
stats.shapiro(versicolor['sepal_width'])

stats.ttest_ind(setosa['sepal_width'],

7 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

versicolor['sepal_width'])

import pingouin as pg

# Read an example dataset


df = pg.read_dataset('mixed_anova')

# Run the ANOVA


aov = pg.anova(data=df, dv='Scores', between='Group',
detailed=True)
print(aov)

8 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

pg.rm_anova(data=df, dv='Scores', within='Time',


subject='Subject', detailed=True)

from statsmodels.multivariate.manova import MANOVA

maov = MANOVA.from_formula('Sepal_Length + Sepal_Width + \


Petal_Length + Petal_Width ~
Species', data=df)

print(maov.mv_test())

9 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

10 of 11 9/30/2021, 12:32 PM
ANOVA, T-test and other statistical tests with Python | by Fra... https://towardsdatascience.com/anova-t-test-and-other-statistic...

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