Fundamentals of Crop Physiology
Fundamentals of Crop Physiology
Fundamentals of Crop Physiology
Compiled by:
Ekta
Faculty Associate,
Department of Agriculture,
Faculty of Science and Engineering,
Jharkhand Rai University, Namkom.
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Experiment - 1
Plants are multicellular organisms composed of millions of cells with specialized function.
All plant cells have the same basic eukaryotic organization.
Cell Wall
A fundamental difference between plant and animal cells is that the plant cell is surrounded by
a rigid cell wall, mostly made of polysaccharides (cellulose, hemicellulose, pectin) and lignin.
Secondary cell walls are thicker and stronger, and they are deposited when most cell
enlargement has ended.
Secondary cell walls have their strength and toughness due to lignin; a glue like material.
The lignified secondary walls provide the plants the structural reinforcement necessary to grow
vertically above the soil.
Bryophytes which lack the lignified cell walls are unable to grow more than a few centimeters
above the ground.
In plants, the neighboring cells are cemented together by a middle lamella (intercellular layer).
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Plasma Membrane (Plasmalemma)
All cells are enclosed in a membrane that serves as their outer boundary, separating the
cytoplasm from the external environment.
This plasma membrane allows the cells to take up and retain certain substances while excluding
others. Thus, plasmalemma accounts for selective traffic of solutes across membrane.
All biological membranes consist of a double layer (bilayer) of phospholipids in which proteins
are embedded.
The membrane is not a static structure, but it is a dynamic structure. Both lipid and protein
molecules are free to move and are usually in a constant motion. However, these molecules
readily move in the plane of membrane, a process known as lateral diffusion.
Phospholipids
Phospholipids are a class of lipids in which 2 fatty acids are linked to glycerol, which is linked
to a phosphate group.
The head groups are highly polar (hydrophilic) whereas the hydrocarbon chains of fatty acids
are highly nonpolar (hydrophobic).
Thus, phospholipids display both hydrophilic and hydrophobic properties, hence they are
amphipathic.
In the bilayer, the amphipathic lipids are arranged is such a way that their hydrophobic tails
point toward each other and the hydrophilic heads make the surfaces.
The bilayer is stable in aqueous environment because its surfaces readily associate with water.
Proteins
The proteins which are embedded in lipid bilayer are globular.
These proteins can be divided into two types, integral and peripheral. Integral proteins are deeply
embedded in the lipid bilayer. Most integral proteins span the entire width of the lipid bilayer so one
part of the protein interacts with the outside of cell, another part interacts with hydrophobic core and
the third part interacts with interior of cell (cytosol).
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Ion channels are always integral proteins. Certain receptors that participate in signal transduction are
integral proteins.
Nucleus
The nucleus is surrounded by a double membrane called the nuclear envelope. The space between
these two membranes is called the perinuclear space. The joining sites of the two nuclear membranes
are called the nuclear pores. The material filled in the nucleus is called nucleoplasm (or nuclear sap).
About 8% of the surface area of the nuclear membrane is occupied by pores. These pores allow the
transport of substances between cytosol and nucleus.
Nucleus is the site of storage and replication of chromosomes, composed of DNA and its
associated proteins (histones). The DNA-protein complex is known as chromatin.
Nucleus contains a densely granular region called the nucleolus, which is the site of ribosome
(ribosomal RNA) synthesis.
Ribosomal proteins are synthesized in cytosol and transported into nucleus via nuclear pores,
where they bind with rRNA to form 40S and 60S subunits. These subunits pass into cytosol and
aggregate to form 80S ribosomes.
The genes are transcribed in nucleus to form mRNA, tRNA and rRNA. mRNA and tRNA pass
from nucleus to cytosol where they are used for protein synthesis.
The nucleotide sequence of mRNA is translated into amino acid sequence of proteins by
ribosomes. tRNA assists by transferring amino acids to mRNA codons.
Endoplasmic Reticulum
Cells have an elaborate network of internal membranes called endoplasmic reticulum (ER).
ER is continuous with the outer membrane of nuclear envelope (but not plasmalemma).
Rough ER is covered with ribosomes which synthesize proteins to be delivered to lumen of ER.
Smooth ER lacks ribosomes.
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Golgi Apparatus
Golgi apparatus (or Golgi complex) is made of one or more dictysomes (or Golgi bodies) which
are stacks of 3-10 flattened sacs (cisternae) and vesicles. Plant cells contain up to several hundred
Golgi bodies dispersed in cytoplasm. The cisternae close to plasmalemma are called trans face,
and the cisternae close to center of cell are called cis face. The medial cisternae are between trans
and cis cisternae. Golgi body is a dynamic structure; new cisternae are continuously produced
from endoplasmic reticulum at cis face while old cisternae are lost in the form of vesicle at trans
face. Golgi apparatus has intermediary position between ER and extracellular space.
Ribosomes
Ribosomes are composed of rRNA and protein.
Ribosomes play an important role in protein synthesis.
Plant cells contain 3 distinct types of ribosomes, which occur in cytoplasm, mitochondria and
chloroplast.
The mitochondrial and chloroplastic ribosomes are smaller (70 S) than cytoplasmic ribosomes
(80 S).
The rRNA molecules of cytoplasmic ribosomes are formed by transcription of nuclear genes in
nucleolus. Whereas rRNA of mitochondrial and chloroplastic ribosomes are formed by
transcription of mitochondrial and chloroplastic genes respectively.
The proteins of cytoplasmic ribosomes are coded by nuclear genes and synthesized in cytosol.
Most of the proteins of mitochondrial and chloroplastic ribosomes are also synthesized in
cytosol by nuclear genes.
Mitochondria
Mitochondria are cytoplasmic organelles.
Mitochondria are the sites of oxidative phosphorylation (ATP synthesis).
Mitochondria are surrounded by two membranes. The outer membrane is smooth and the inner
membrane is highly convoluted. The folds of inner membrane are called ‘cristae’.
The components of respiratory electron transport chain are found in inner membrane.
The inner membrane is also characterized by the presence of stalked particles with spherical
heads containing ATPase. ATPase catalyses the synthesis of ATP.
The inner membrane is highly impermeable to the passage of protons (H+), which allows the
formation of electrochemical gradient necessary for ATP synthesis.
The compartment enclosed by inner membrane is called ‘matrix’. Matrix contains the enzymes
of Krebs cycle (TCA cycle or citric acid cycle).
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Mitochondria contain their own protein synthesizing machinery (ribosomes, tRNA etc.).
Mitochondrial ribosomes are smaller (70 S) than those found in cytosol (80 S).
Mitochondrial genome of plants consists of about 200 kb (200,000 base pairs), which is much
larger than animal mitochondria.
Plastids
Plastids are the organelles which are peculiar to plant cells.
Plastids that contain high concentration of carotenoid pigments are called ‘chromoplasts’. They
give yellow, orange and red colors to many fruits (tomato), roots (carrot) and flower petals.
Chloroplasts are the plastids that contain green pigment, chlorophyll. They are found in green
tissues of plant, especially leaf. They are absent in roots.
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The chloroplast is surrounded by the inner and outer membranes.
Chloroplasts also contain third system of membrane called thylakoid. All the
chlorophyll is contained within this membrane, which is the site of light reactions of
photosynthesis.
Thylakoid membranes are highly folded and appear like stacked coins. These stacked
membranes are known as grana lamellae (or grana thylakoid). The membranes without
stacking are known as stroma lamellae (or stroma thylakoid). Each stack is called granum.
The region of the chloroplast that is inside the inner membrane and surrounds
thylakoids is known as stroma. The carbon reactions take place in stroma.
Central Vacuole
Mature plant cells contain large, water-filled central vacuole (usually one or
two). Central vacuole can occupy 80-90 % of the total volume of cell.
Plant cells also contain microbodies, which are spherical organelles surrounded by a
single membrane.
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Glyoxysomes are present in oil-storing seeds. They can convert stored fatty acids into
sugars that can be translocated in the plant to provide energy for growth.
Cytoskeleton
Experiment - 2
Theory
Stomata are minute pores found on the epidermis of leaves and young shoots of plants that are
used to control exchange of gases. The pore is surrounded by a pair of specialised cells called
the guard cells that are responsible in regulating the size of the opening.
Water is released through the stomata into the atmosphere in the form of water vapour through
the process called transpiration. Besides this, the exchange of oxygen and carbon dioxide in
the leaf also occurs through the stomata.
Distribution of Stomata
Distribution of stomata varies between monocots and dicots, between plant species, and
between the underside and top side of the leaves on a plant.
Stomata are found more on plant surfaces thriving under higher light, lower atmospheric carbon
dioxide concentrations and in moist environments.
Usually the lower surface of a dicot leaf has a greater number of stomata while in a monocot
leaf they are more or less equal on both surfaces. In most of the floating plants, stomata are
found only on the upper epidermis.
Materials Required
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Fresh leaf, Glycerine, Safranin solution, Forceps, Needle and brush, cover slip, compound
microscope, Distilled water, dropper, blade, watch glass, glass slide
Procedure
Experiment - 3
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Objective
Theory
Gram seeds when soaked in water swell up due to imbibition. As a result of absorption or
imbibition of water, the size of the raisins increases. The difference in mass between the
swollen and dry raisins gives the amount of water imbibed by the raisins.
Imbibition is the process of adsorption of water by substances without forming a solution.
Swelling of seeds when immersed in water is an example of imbibition. Imbibition is the
temporary increase in the volume of the cell. Imbibition is a passive transport of materials that
does not require energy during the process.
The substance that imbibes water is called imbibant and the liquid which is imbibed is called
adsorbent. The process of imbibition occurs mainly due to the presence of hydrophilic or
lyophilic colloids. Water is imbibed through the sub microscopic capillaries present on the
surface of the body.
The movement of water into the plant parts continues until a dynamic equilibrium is attained.
Imbibition of water increases the volume of the imbibant, which results in imbibitional
pressure.
Materials Required
Blotting paper, petridish, gram seeds, spatula, electronic balance, distilled water, small beaker
Procedure
Observations
The weight of dry raisins is,x… gm
The weight of swollen raisins is, y…gm
Calculations
Weight of water absorbed by the raisins =
Precautions
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Raisins should be clean and dry and should have intact stalks.
Experiment - 4
Material Required: Potato tubes, potato peelers, knives, ruler, petri-dshes, and sucrose solution of 0.2M
0.8M.
Procedure:
5 0ml 10ml 1M
OBSERVATION:
Table showing change in the size and mass of the potato tissue
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Experiment - 5
Theory
When a plant cell is immersed in concentrated salt solution (hypertonic solution), water from
the cell sap moves out due to exosmosis. Exosmosis is the passage of water from higher water
concentration to lower water concentration through a semipermeable membrane.
When a plant cell is placed in concentrated salt solution, water concentration inside the cell is
greater than that which is outside the cell. Therefore, water moves through the cell membrane
into the surrounding medium. Ultimately the protoplasm separate from the cell wall and
assumes spherical shape. It is called plasmolysis.
When a plasmolysed cell is placed in a hypotonic solution, (i.e., the solution having solute
concentration lower than the cell sap), the water moves into the cell because of the higher
concentration of water outside the cell than in the cell. The cell then swells to become turgid. It
is called deplasmolysis.
If we place living cells in isotonic solution (i.e., both solutions have the same amount of solute
concentration), there is no net flow of water towards the inside or outside. Here, the water
moves in and out of the cell and is in equilibrium, so the cells are said to be flaccid.
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Materials-required:
Onion bulb, watch glass, petri-dish, slides, cover-slips, forceps, brush, needles, microscope and
20% concentrated sucrose solution.
Procedure :
Take an onion bulb, with the help of forceps pull a thin transparent peel gently.
Keep this peel in water filled watch glass.
Transfer the peel gently on a clean slide in a drop of water with the help of a brush and
needle.
Examine it under high power of a microscope.(40X)
Observe the individual cells and make a sketch of the cells showing the cell wall and cell
membrane. (observation 1)
With the help of dropper put the sucrose solution on the slide by the sides of cover-slip so
that it reaches the peel under the cover-slip.
Examine the peel again after 10 mins. (observation 2)
Drain out the concentrated sugar solution from the peel and add few drops of water into
the peel.
Observe the cells again after 10 mins.(observation 3)
Observation table:
Inference:
When the peel of onion is kept in concentrated solution (hypertonic), the protoplasm
shrinks as the water starts moving out due to exosmosis.
This phenomenon of shrinkage of protoplasm when the cells are kept in a concentrated
solution is known as plasmolysis.
Further, when the cells are kept in water (hypotonic solution) the protoplasm again
regains its original shape due to movement of water into the cells by the process of
endosmosis. This phenomenon is called deplasmolysis.
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Experiment -6
Objective
Our objective is to compare the rate of transpiration between the upper and lower surfaces of a
leaf.
Theory
Transpiration is the process of water movement through a plant and its evaporation into the
atmosphere from its aerial parts. In leaves and in young shoots the epidermal layer contains
minute microscopic pore like structures called stomata. Transpiration occurs chiefly through
the stomata of the leaves. The stomata are mainly concerned with exchange of gases during
the process of photosynthesis and respiration. Each stomata has a slit like opening called the
stomatal pore, which is surrounded by two special cells called the guard cells. These special
cells help to regulate the rate of transpiration by opening and closing the stomata.
Materials Required:
A healthy potted plant, forceps, filter paper strips, wire gauze, 3% cobalt chloride solution,
clips, petridish, glass slide.
Procedure:
Take 3 % cobalt chloride solution from beaker and pour into the Petri dish.
Take some filter paper strips and dip them in the cobalt chloride solution.
Keep the strips in the solution for 3-5 minutes. They become pink in colour when wet.
Remove the strips from the solution using forceps.
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Place the strips on the wire gauze to allow them to dry.
The filter paper becomes blue in colour on drying.
Select one healthy leaf and clean the leaf to remove the water droplets using a filter
paper.
Take the dry pieces of cobalt chloride paper from the wire gauze.
Place the dried strips of cobalt chloride paper: one on the upper and the other on the
lower surface of a leaf of the potted plant.
Take two glass slides and place one over the upper and the other over the lower side
of the leaf.
Clip the slides together using binder clips.
Note the time taken by the cobalt chloride paper to change its blue colour to pink.
Note: Dry cobalt chloride paper that is blue in colour turns pink when it comes in contact with
water. Using this property of cobalt chloride paper we can study the rate of transpiration from
the two surfaces of a leaf by comparing the loss of water vapour from the two surfaces of the
leaf.
Observation
The time taken to change colour of the cobalt chloride paper from blue to pink on the lower
leaf surface is less than the upper surface.
Conclusion
The quick change in the colour of cobalt chloride paper on the lower surfaces indicates higher
rate of loss of water vapour from this surface than the upper one.
Precautions
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Experiment -7
Theory:-
Photosynthetic plants convert light energy from the sun to chemical food energy. During
photosynthesis, molecules referred to as pigments are used to capture light energy. Pigments
are chemical compounds which reflect only certain wavelengths of visible light. Plant leaves
contain four primary pigments: chlorophyll a (dark green), chlorophyll b (yellowish-green),
xanthophylls (yellow) and carotenoids (orange).
In paper chromatography, the mixture is spotted onto the paper, dried and the solvent is allowed
to flow along the sheet by capillary attraction. As the solvent slowly moves through the paper,
the different compounds of the mixture separate into different coloured spots. The paper is
dried and the position of different compounds is visualized. The principle behind the paper
chromatography is that the most soluble substances move further on the filter paper than the
least soluble substances.
Materials Required:
Spinach leaves, chromatography chamber, motar and pestle, ether acetone solvent, scissors,
acetone, pencil, capillary tube, spatula, scale, filter paper strips, watch glass, thread, stapler
Procedure:
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Take a few freshly plucked green spinach leaves.
Using scissors, cut the spinach leaves into small pieces and let them fall into the mortar.
Take a measuring cylinder that contains 5ml of acetone and pour it into the mortar.
Grind the spinach leaves using the mortar and pestle.
Place the extract into a watch glass using a spatula.
Take a strip of filter paper having a narrow notch at one end of the strip.
Take a pencil and a scale and draw a horizontal line with a pencil about 2-3 cm away
from the tip of the notch.
Put a drop of the pigment extract in the middle of the line with the help of a capillary
tube.
Allow the drop to dry and repeat till four or five drops are placed on the paper.
Take the chromatographic chamber and pour ether acetone solvent in it.
Fold one end of the filter paper strip and staple it.
Using a thread, hang the filter paper strip in the chromatographic chamber.
The loading spot should remain about 1 cm above the solvent level.
Leave the chromatographic chamber undisturbed for some time.
We can observe, as the solvent moves through the paper, it spreads the different
pigments of the mixture to various distances.
When the solvent rises about 3/4th up the strip, remove the strip carefully and let it dry.
Observation
The dried chromatographic paper strip shows four distinct paper bands. Different pigments can
be identified by their colours.
Calculations
Result
The topmost orange yellow band of pigments in the separation corresponds to carotene. The
yellowish band appearing below it indicates the xanthophylls. The third from above dark green
band represents chlorophyll a. The lowermost yellowish green band is that of chlorophyll b.
Precaution
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While hanging the strips in the chromatography chamber, the loading spot should
remain about 1 cm above the solvent level.
Experiment -8
Aim
To study the rate of respiration in germinating seeds having different substances such as
carbohydrates, fats and proteins.
Theory
Respiration is the process during which simple carbohydrates, like glucose, break down into
simpler substances and liberate carbon dioxide and energy. The compound used, or oxidized,
during respiration is called a respiratory substrate. Carbohydrates, fats, and proteins are
examples of respiratory substrates, and carbohydrates are the preferred respiratory substrate
among them. The rate of respiration can be measured in terms of gas exchange, that is,
consumption of the respiratory substrate oxygen, or evolution of carbon dioxide.
Materials Required
Test tube, Distilled water, germinating seeds of bean, a cork with a hole, measuring cylinder,
a conical flask, thread, freshly prepared potassium hydroxide solution,
Procedure
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Insert one end of a delivery tube into the conical flask through the cork and dip the other
in a beaker containing water.
Observe the position of the water level in the delivery tube.
Keep the apparatus undisturbed for two hours.
Observation
After two hours, you will see that the level of water has risen in the delivery tube at the end
dipped in the beaker of water.
Conclusion
The rise in water level at the end of the bent glass tube proves that the germinating seeds release
CO2 during respiration and requires large amount of O2 which creates a pressure inside the
conical flask due to which the water is sucked in upward direction.
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