Heterocyclic Organic Chemistry

Heterocyclic
Organic Chemistry
CHEM 341
Dr. Assem Barakat
Associate Professor
Organic Chemistry
King Saud University
Room: 2B94; Email: ambarakat@ksu.edu.sa
Name heterocyclic, carbohydrates, amino acids, peptides, protein and
lipids of organic compounds using IUPAC and COMMON naming system, their
occurrence in nature, physical properties.
Identify, classify, synthesis and reactions of the major functional groups

the above compounds.
Understanding the reaction of functional groups and families of these

organic compounds.
The practical uses of these organic compounds as drugs, food additives,

pesticides, plastics, and other products, as well as their occurrence in
nature.
2
9/15/2019 Dr. Assem Barakat
Topics will be Covered:
N Heterocyclic compounds.
S Carbohydrates.
O Amino acids, peptide and
protein, lipids.
3
Schedule of Assessment Tasks for Students
During the Semester
Assessment task (i.e., essay, test, Proportion of
Week
quizzes, group project, examination, Total
Due
speech, oral presentation, etc.) Assessment
1 Major exam I Week 6 20%
2 Major exam II Week 12 20%

Week 1-
3 Quiz and activities 20%
15
4 Final Exam Week 16 40%
4
List Required Textbooks
• Heterocyclic chemistry, J.A. Joule and K. Mills, and G. F.

Smith.4th ed., Blackwell Publishing 2000.
• Heterocyclic Chemistry (Oxford Primer Series) – T.
Gilchrist.
• Aromatic Heterocyclic Chemistry – D. T. Davies.
• http://www.acdlabs.com/iupac/nomenclature/
5
Introduction
 Cyclic organic compounds are carbocycles or heterocycles

 Carbocycle rings contain only carbon atoms
 Heterocycle rings atoms in addition to carbon (N,S,O are
common)
 Heterocycles include many important natural materials as
well as pharmaceuticals.
 Heterocyclic systems are important building-blocks for
new materials possessing interesting electronic,
mechanical or biological properties.
6
Drugs Containing Heterocycles
7
Drugs Containing Heterocycles
Sildenafil (initially studied for use in

hypertension (high blood pressure) and angina
pectoris, but that it could induce marked penile
erections.
Pfizer therefore decided to market it for erectile dysfunction, rather
than for angina. annual sales of Viagra in the period 1999–2001 exceeded
$1 billion.
8
Classification of heterocycles
A) Classification – Aromatic Six-Membered
9
B) Classification – Aromatic Five-Membered
10
Classification – Unsaturated / Saturated
11
Structure and Aromaticity
For a molecule to be aromatic it must:

• Be cyclic
• Have a p-orbital on every atom in ring
• Be planar
• Posses 4n+2 p electrons (n = any integer)
benzene naphthalene
[14]-Annulene
cyclopropenyl cation Erich Hückel
12
Electronic structure of pyridine
• Pyridine is basic in nature; it reacts with water and
acids.
• The nitrogen atom is more electronegative as compared
with the carbon itself. It pulls electron density from the
ring.
• Therefore, the system with the pyridine nitrogen is
called  -deficiency.
13
Electronic structure of pyridine
• Pyridine is a stronger base than pyrrole but a weaker
base than alkylamines.
• The sp2-hybridized N holds the lone-pair electrons more
tightly than the sp3-hybridized nitrogen in an alkylamine.
• Electrophilic aromatic substitution is difficult.
• Nucleophilic aromatic substitution is easy.
14
Furans, Pyrroles and Thiophenes – Structure
• Aromatic: Thus, 6 electrons Sp2 hybridised and planar

• Lone pair tied up in aromatic ring
• Pyrrole is -electron excessive
• Thus, Electrophilic Aromatic Substitution is Easy.
• Nucleophilic Substitution is Difficult.
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Nomenclature of Heterocyclic Compounds
The IUPAC rules allow three nomenclatures.

I.The Hantzsch-Widman Nomenclature.
II. Common Names
III.The Replacement Nomenclature
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I. Hantzsch-Widman Nomenclature
The Hantzsch-Widman nomenclature is based on the type

(Z) of the heteroatom; the ring size (n) and nature of the
ring, whether it is saturated or unsaturated .
I. Hantzsch-Widman Nomenclature
This system of nomenclature applies to monocyclic three-to-
ten-membered ring heterocycles.
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I. Type of the heteroatom
The type of heteroatom is indicated by a prefix as

shown below for common heteroatoms:
O Oxa
N Aza
S Thia
P Phospha
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II. Ring size (n)
The ring size is indicated by a suffix according to Table I

below. Some of the syllables are derived from Latin
numerals, namely ir from tri, et from tetra, ep from
hepta, oc from octa, on from nona, ec from deca.
Table I: Stems to indicate the ring size of heterocycles
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The endings indicate the size and degree of unsaturation of
the ring.
Table II: Stems to indicate the ring size and degree of
unsaturation of heterocycles
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• According to this system heterocyles are named by
combining appropriate prefix/prefixes with a stem from
Table II. The letter “a” in the prefix is omitted where
necessary.
• Each suffix consists of a ring size root and an ending
intended to designate the degree of unsaturation in the
ring.
• It is important to recognize that the saturated suffix
applies only to completely saturated ring systems, and the
unsaturated suffix applies to rings incorporating the
maximum number of non-cumulated double bonds.
21
Systems having a lesser degree of unsaturation require an
appropriate prefix, such as "dihydro "or“ tetrahydro".
Saturated 3,4 & 5 membered nitrogen heterocycles should

use respectively the traditional "iridine", "etidine“ & "olidine“
suffix.
22
23
24
In case of substituents, the heteroatom is designated
number 1, and the substituents around the chain are
numbered so as to have the lowest number for the
substituents.
25
The compound with the maximum number of noncumulative
double bonds is regarded as the parent compound of the
mono cyclic systems of a given ring size.
26
Partial Unsaturation
Use fully unsaturated name with dihydro, tetrahydro, etc
27
When numbering give priority to saturated atoms.
28
29
Rings With More Than One Heteroatom
Two or more similar atoms contained in a ring are indicated

by the prefixes ‘di-’, ‘tri’, etc.
If more than one hetero atom occur in the ring, then

the heterocycle is named by combining the
appropriate prefixes with the ending in Table I in
order of their preference, O > S > N.
30
31
Priority of heteroatoms for numbering
purposes:
32
The ring is numbered from the atom of preference in such
a way so as to give the smallest possible number to the
other hetero atoms in the ring. As a result the position
of the substituent plays no part in determining how the
ring is numbered in such compounds.
33
There are a large number of important ring systems which
are named widely known with their non-systematic or
common names.
34
35
36
Identical systems connected by a single bond
Such compounds are defined by the prefixes bi-, tert- ,

quater-, etc., according to the number of systems, and
the bonding is indicated as follows:
37
Naming Hetrocycles with fused rings
When naming such compounds the side of the heterocyclic

ring is labeled by the letters a, b, c, etc., starting from
the atom numbered 1. Therefore side ‘a’ being between
atoms 1 and 2, side ‘b’ between atoms 2 and 3, and so on
as shown below for pyridine.
38
The name of the heterocyclic ring is chosen as the parent

compound and the name of the fused ring is attached as a
prefix. The prefix in such names has the ending ‘o’, i.e.,
benzo, naphtho and so on.
39
40
In a heterocyclic ring, other things being equal,

numbering preferably commences at a saturated rather
than at an unsaturated hetero atom.
41
Handling the “Extra Hydrogen”
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44
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III. The Replacement Nomenclature
In replacement nomenclature,the heterocycle's name is

composed of the carbocycle's name and a prefix that
denotes the heteroatom.
Thus,"aza","oxa",and "thia“ are prefixes for a nitrogen
ring atom ,an oxygen ring atom, and a sulfur ring atom,
respectively.
Notice that heterocyclic rings are numbered so that the
heteroatom has the lowest possible number.
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Heterocyclic

Identify, classify, synthesis and reactions of the major functional groups

Understanding the reaction of functional groups and families of these

The practical uses of these organic compounds as drugs, food additives,

1 Major exam I Week 6 20%

2 Major exam II Week 12 20%

• Heterocyclic chemistry, J.A. Joule and K. Mills, and G. F.

 Cyclic organic compounds are carbocycles or heterocycles

Sildenafil (initially studied for use in

A) Classification – Aromatic Six-Membered

B) Classification – Aromatic Five-Membered

Classification – Unsaturated / Saturated

For a molecule to be aromatic it must:

• Aromatic: Thus, 6 electrons Sp2 hybridised and planar

The IUPAC rules allow three nomenclatures.

The Hantzsch-Widman nomenclature is based on the type

The type of heteroatom is indicated by a prefix as

The ring size is indicated by a suffix according to Table I

Table I: Stems to indicate the ring size of heterocycles

Saturated 3,4 & 5 membered nitrogen heterocycles should

Use fully unsaturated name with dihydro, tetrahydro, etc

Two or more similar atoms contained in a ring are indicated

If more than one hetero atom occur in the ring, then

Such compounds are defined by the prefixes bi-, tert- ,

When naming such compounds the side of the heterocyclic

The name of the heterocyclic ring is chosen as the parent

In a heterocyclic ring, other things being equal,

In replacement nomenclature,the heterocycle's name is

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