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Protein Chemistry

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Protein Chemistry is a diverse field of studying and understanding the

function, structure, chemical properties, uses, and interactions of proteins. Proteins are
complex molecules that play an essential role to make human cells, tissues, and
organs function well. They are made of chains of smaller units of amino acids to form
a poly-peptide chain that can help in various biological processes such as enzymatic
reactions, cellular signaling, and structural support. According to MedlinePlus (2021),
proteins are responsible for most of the work in the human body such as structure,
function, and regulation. There are 20 different types of amino acids combined to
produce proteins. Its sequence represents the protein’s 3D structure and functions.

The National Library of Medicine


(2004) stated that the complete
structure of a protein is divided into
four levels: primary, secondary,
tertiary, and quarternary. Khan
Academy (2022) simply defines
primary structure as the sequence of
amino acids. One example of a protein
that has a primary structure is the insulin. It is composed of two polypeptide chains, A
and B. Chain A and B has their sequence of amino acid. Anfinsen (1973)
demonstrated that the way the protein folds and interacts with itself and other
molecules is determined by the primary structure. However, some factors like
temperature changes, pH, and the presence of other molecules can interrupt the
process of folding and its shape which affects the protein’s function.

According to Sneha et.al.


(2016) in their study Advances in
Protein Chemistry and Structural
Biology, secondary structure of a
protein refers to the ways of different
regions of poly-peptide chains to fold
and interact with other molecules
through hydrogen bonds. It also plays
a big role in predicting the tertiary
structure of proteins. There are two
common forms of secondary
structure: alpha-helix and beta-helix.
Alpha-helices are held together by hydrogen bonds in the poly-peptide backbone
which causes the helix to coil in the right direction. Beta-pleated sheets on the other
hand are held together by hydrogen bonds in different poly-peptide backbone. The
chains of beta-pleated sheets are aligned parallel or anti-parallel to each other
(Boundless, 2020).

BD Editors (2020) described the tertiary structure of


protein as the 3-Dimensional shape resulting from the
process occurred in the secondary structure. This structure is
important in determining the function of the protein. In this
structure, the folding of the polypeptide chain will be a
complex process so it should be assisted by chaperones.
Chaperonse are specialized proteins that helps in preventing
incorrect folding. They are responsible in moving
or manipulating the protein around, bringing
different types of amino acids closer together
which then can form bonds to form the 3-
Dimensional structure.

The quarternary structure according to


Byju (2023) is the result of the process done in
tertiary structure. The quarternary structure is
produced by the arrangement of these subunits
with respect to each other.

In the process of folding, there


are some errors that may occur.
Misfolded proteins can lead to some
diseases such as Huntington’s,
Parkinson’s, and Alzheimer’s. Raynaud
(2010) stated that the function of
proteins depends on their native
conformation or folding it into the 3-
Dimensionl structure. If misfolding
occurs spontaneously, it can lead to the
formation of toxic protein folds, that
results in several diseases. This
misfolded protein follows the wrong
folding pathway leading to the formation of an incorrect conformation.

As there are many differentiating properties of proteins, determining their


characteristics and structure is important. To further develop an understanding of what
proteins are, this qualitative research aims to discuss the functions, structure, and
characteristics of proteins.

REFERENCES

Anfinsen (1973). Principles that govern the folding of protein chains. Science, 181(96), 223-230.
https://doi.org/10.1126/science.181.4096.223

BD Editor. (2020). Tertiary Structure - Definition and Function. Biology Dictionary. Retrieved
from https://biologydictionary.net/tertiary-structure/

Boundless. (2020). Proteins - Protein Structure. In General Biology. LibreTexts.


https://bio.libretexts.org/Bookshelves/Introductory_and_General_Biology/Book
%3A_General_Biology_(Boundless)/03%3A_Biological_Macromolecules/
3.09%3A_Proteins_-_Protein_Structure

Khan Academy (2022). Orders of protein structure. Khan Academy. Retrieved April 27, 2023,
from https://www.khanacademy.org/science/biology/macromolecules/proteins-and-
amino-acids/a/orders-of-protein-structure
MedlinePlus (2021). How Genes Work: Protein Production. MedlinePlus. Retrieved April 27,
2023, from https://medlineplus.gov/genetics/understanding/howgeneswork/protein/

National Library of Medicine (2004). Overview of Protein Structural and Functional Folds.
Retrieved April 27, 2003 from https://www.ncbi.nlm.nih.gov/pmc/articles

Reynaud, E. (2010). Protein Misfolding and Degenerative Diseases. Nature Education 3(9):28

Sneha, P. et.al. (2016). Protein secondary structure. In Advances in Protein Chemistry and
Structural Biology (Vol. 105, pp. 19-48). Elsevier. Retrieved April 27, 2023 from
https://www.sciencedirect.coma

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