Axiovision SN
Axiovision SN
Axiovision SN
AxioVision
Perform to Perfection
1
A New Way of Thinking
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Table of Contents
An Easy Decision 4
Topography Module 18
Archiving Module 19
Materials Packages 22
Overview 31-43
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An Easy Decision
Easy start
AxioVision allows you to achieve outstanding results in digi-
tal microscopy and documentation. From image acquisition
to processing, measuring, and annotating, to archiving and
reporting, you can follow the process from beginning to
end.
Easy to use
AxioVision offers you a convincing operating concept: from
the basic functions to the highly specialized analysis mod-
ules, it is simple and comprehensible. My AxioVision allows
you to adapt user interfaces and functions to your individual
needs, configure your own toolbars, and combine frequently
recurring work steps in new dialogs. AxioVision transforms
functional diversity and complexity into something quite
simple for the user.
Easy ZVI
ZVI is the name of the image format that stores your image
data together with image number, acquisition date, micro-
scope settings, exposure data, size and scale data, contrast-
ing techniques used, etc. The advantages are obvious – the
image information is available at any time. No annotations
are lost and nothing is forgotten. A crucial point to note is
that the annotations are not permanently burned in the im-
age, but are stored in a file together with the image data.
The image can be reproduced even years later under identical
conditions.
4
Easy economy
Offering the entire performance spectrum for contemporary invest in the functions that you really need, while enjoying
digital microscopy at an outstanding price-performance the security of being at the forefront of technological devel-
ratio, AxioVision also excels from an economic standpoint. opments. With AxioVision LE, you even have a universal im-
The fact that you can expand the system module by module age viewer for simple image analysis tasks at your disposal
in line with your own requirements means that you only that is free of charge.
5
An Overview of All Modules
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Growing possibilities
The world of materials sciences is constantly changing and
evolving and hence requires a software package that can
change and evolve with it. AxioVision is very flexible in its
design, because with every update and every expansion,
Carl Zeiss is at the cutting edge of innovative software de-
velopments. In addition, the user interface is customizable.
This gives users the ability to make it easy to understand
and use for their specific applications. The functions of the
basic program – imaging, processing, annotations, archiving,
reporting, and microscope control – can be quickly expanded
to meet your growing needs by adding further modules.
Moreover, new solutions for specific applications are con-
tinually being developed. They include additional functions
for image processing, interactive measuring, and automated
Comparative
image analysis as well as control modules for light path and
Diagrams motorized stages.
Comparison of images with
comparative diagrams
Topography
Height and roughness
measurements
NMI VBA
Measurement of non- Integrated development
metallic inclusions environment
according to international
standards
7
Basic Program
Impressive Range of Functions
You will be amazed at the wealth of functions of the entry-level microscope software
offered by Carl Zeiss. Even the basic version delivers a powerful image processing and
analysis system and meets all the key requirements of contemporary digital microscopy.
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Simple, clearly presented user interface for camera control and image acquisition
9
Basic Program
Impressive Range of Functions
10
Image processing: correction of illumination error Text and graphic elements: labeling of defects Image measurement: area measurement
(left: with shading, right: corrected)
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Image Acquisition Modules
Enhanced Performance in Imaging
The results of your analyses are only as good as the quality of your acquired images.
AxioVision offers you the perfect basis for achieving the required quality with high-
performance additional modules, from MosaiX and Autofocus to Z-Stack and HDR
Imaging. These modules save the additional information in your images, which is so
often crucial.
MosaiX image of a gear-wheel, 15x20 tiles Detailed view: individual tile of the MosaiX image Images of a printed circuit board – on the left, a single
image and, on the right, an HDR image
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Single images from different focus planes of an electronic component.
With Extended Focus, users can achieve an image that is sharp across
the whole field.
HDR Imaging
Developed to enable you – when using reflected-light mi-
croscopy, among other techniques – to capture all object
details on specimens with very high contrast in a single
high-resolution image: the HDR Imaging – High Dynamic
Range Imaging – module expands the dynamic range
of your cameras and increases the brightness gradations
in your images measurably. Up to 32 images with differ-
ent exposure times are acquired one after another and
merged to produce one single resulting image. This means
reduced noise and improved image quality. Depending on
the specimen and the acquisition situation, you will obtain
significantly more information and consequently more pre-
cise measurement results. This technique will also be an inex-
pensive alternative if you want to improve the image quality
of your camera, as even in the case of a camera with a low
dynamic range the results can be seen clearly. For instance,
it is an economical way to transform an 8-bit camera into a
camera with a 12-bit dynamic range.
Extended Focus
A microscope‘s depth of field is often not sufficient to ob-
tain a single image which is sharp across the whole field.
The software solution to this problem is the Extended Focus
module. The principle is simple – while focusing through
the sample, you acquire a number of images at different
focus positions or use your z-stack images as input data.
In both cases the sharp details from each individual image
are extracted and a final image is calculated on the basis of
state-of-the-art algorithms. The result is an image of first-
class quality that is rich and sharp in every detail.
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Image Acquisition Modules
Enhanced Performance in Imaging
Panorama
Perfect for objects that do not fit into one single image field
– the Panorama module is the manual variant of MosaiX.
With the help of a manual mechanical or a coded stage,
you can generate high-resolution panorama or overview
images from individually acquired images making it possible
to follow irregular structures, such as cracks, beyond the
edges of the frame. Overlapping images can also be com-
bined with pixel precision ensuring that the important
details of your sample are all contained in a single image.
Mark&Find
This module is used to record, store, and automatically
revisit different positions on your samples. It requires the
use of motorized x-, y-stages. The positions on the sample
are stored together with the acquired image. Lists of posi-
tions can also be imported. Your advantage: reliability, time
saving, and statistical accuracy.
Time Lapse
Panorama: a crack is followed beyond the image field. Only the required images are acquired. Investigating changes over time, documenting results clearly
– with the Time Lapse module, you can control both camera
and microscope precisely. For instance, with the help of a
heating stage it is possible to monitor structural changes.
Z-Stack
To enable the automatic generation of z-stack images, the Combinations
software controls the z-drive of a motorized microscope in MosaiX, Autofocus, Z-Stack, Mark&Find, Time Lapse – all
precise steps. This is always synchronized with acquisition. these modules can be freely combined with each other
You can either determine the focusing interval yourself or and thus create solutions capable of precisely meeting a
have it automatically computed for highest sample accuracy. wide range of demands. The result is the cost-effective
The advantage of this module is the optimal detection of adaptation of individual solutions to a specific application –
information in the third dimension. In addition, with the Cut with no unnecessary investments.
View function, even the entry-level version of AxioVision
provides you with a highly effective technique for z-stack
analysis.
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Image Processing Module
Get More from Your Images
All the important digital image processing techniques in a single module – Imaging Plus
allows you to process your images for maximum information content and the best
analysis results.
Imaging Plus
• Image Enhancement
In addition to improving contrast, brightness, and color,
this function compensates lighting deficiencies and shad-
ing. Filters for smoothing, sharpening, and edge detection
are included as well as user-definable filter operators.
• Gray Morphology
An ideal tool for grain boundary reconstruction, e.g. to enable
you to reconstruct the boundaries of joined objects ex-
actly. The advantage: individual objects can be separated
with precision.
• Image Arithmetics
The process of calculating a new image from existing im-
ages pixel by pixel: AxioVision Imaging Plus allows the
quantitative combination and comparison of images.
By enhancing the edges, object boundaries can be
• Elastic Registration detected with greater precision.
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Image Analysis Modules
Uncompromising Precision
Utilizing all the information of an image: AxioVision offers you a powerful spectrum
of additional modules for image analysis. For enormously simplified processes, faster
results, uncompromising reliability, and maximum reproducibility.
Interactive Measurement
With this module, parameters describing the specimen can
be determined interactively (e.g. size). A measurement pro-
gram wizard allows users to exactly determine which mea-
surements should be taken. Afterwards, all parameters are
then executed in the specified order. As a result, geometric
and densitometric parameters are presented in a straightfor-
ward measurement list and can be stored with the image
in the archive. You can retrieve this information later at any
time. In addition, all requested measurement values can be
exported (e.g. into Microsoft® Excel).
AutoMeasure
Assessment of hole separation in the online image
If you need to create automatic measuring routines yourself:
with the AutoMeasure module you can rapidly obtain pre-
cise results – without any complicated programming. With
the help of a measurement wizard, AutoMeasure enables
you to carry out complicated measurements within a few
minutes. Simply define the programs that you need and
you can measure an unlimited number of images – while
completely controlling the measuring process. You can de-
termine which steps to be conducted. Even automated pro-
cesses can be interrupted at any time and all parameters
can be individually adjusted with the function dialog.
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1 2 3 4
Automatic analysis of a polymer sample (fig. 1): threshold segmentation (fig. 2), correction of the binary image and automatic separation of objects (fig. 3), overlaid
display of the measurement in the resulting image (fig. 4)
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Topography Module
Surface Analysis Using Digital Height Data
Whether you are dealing with height measurements for production control in the
automotive industry, roughness measurements or 3D reconstructions for the optical
assessment of production tolerances – the Topography module generates height
maps of your samples automatically or interactively using a contact-free and non-
destructive method.
Roughness measurement in accordance with EN 3D topography (texture projection) of a gauge block Height profile measurement in a topographic image
ISO 4287 along a user-selected profile
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Archiving Module
Well-conceived Data Management
Asset Archive
The powerful AxioVision Asset Archive module allows you • Fast, flexible search functions: search by projects carried
to archive not just your images, but also all the associated out for a certain customer/client, by projects carried out
image data, measurement results, and reports of your analy- within the last week/month, by image or sample name,
ses – in an extremely simple way under a single project by date, labels, etc.
number. This makes the process of finding your way around • Clear display of all key data acquired with the image
a large number of data sets significantly easier and quicker. • Logically organized, hierarchical structure:
The up-to-date image management software offers a range Customer/client Project/assignment Asset
of benefits: • Management of customer data/contacts/projects
Asset Archive: structured storage of related images, measurement results, and reports in one project
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Configuration Modules
Automatically Faster
With My AxioVision even the entry-level version of AxioVision offers you all kinds of
methods for creating individual operating windows. These possibilities can be expanded
almost infinitely with the help of two additional modules, and even offers you the
opportunity to develop your own programs within AxioVision.
My AxioVision
My AxioVision is the design concept behind the AxioVision
architecture. It forms the basis for the almost unlimited free-
dom that AxioVision gives you for adapting the powerful
microscope software to your own particular requirements or
for several different users. AxioVision stands out thanks to
the unique range of options it offers for designing custom-
ized user interfaces and functions. It is perfectly suited for
simplifying, optimizing and increasing the efficiency of your
digital microscopy using comprehensible workflows. Even
in the entry-level version the Carl Zeiss software offers you
plenty of scopes to structure your individual work environ-
ment: you can configure your own toolbars and combine
relevant elements for camera and microscope control in your
own new dialogs. Elements can be removed or added –
depending on what you require for your work process.
Commander
The Commander module allows you to record subsequent
steps of your workflow, edit and refine these steps, set para-
meters, and make all this available under a single command.
The benefits are impressive: automatic processing of typical
lab assignments and complete reproducibility of the results
in addition to fast adaptation to new requirements.
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VBA 1
Perhaps you need more functions than the wide range
AxioVision provides. In this case it is possible to increase
and extend the performance of the Carl Zeiss software and
adapt it to your needs with VBA (Visual Basic® for Appli-
cations), the programming language Carl Zeiss uses for
AxioVision functions. VBA provides a completely integrated
development environment that is familiar to programmers.
Since VBA is directly integrated into the host application, it
offers the advantages of fast internal cooperation as well
as the opportunity to develop solutions without additional
programs. The results look and act just like AxioVision. The
major advantage of this module is that the users of your
individually developed software require only a minimum of
training time.
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Materials Packages
Highly Versatile
Compact and economical: with the materials packages, AxioVision offers you complete
solutions that can be put into practice for your routine tasks in industry immediately – at
an all-inclusive price. They can be used with any microscope, are easily upgraded, and
are delivered fully preconfigured – from image acquisition to analysis, evaluation, and
software archiving.
Online Measurement
AutoMeasure Plus
Image Acquisition
Image Processing
Extended Focus
Documentation
Image Analysis
My AxioVision
Configuration
AutoMeasure
Asset Archive
Imaging Plus
Autofocus
Panorama
MosaiX
Z-Stack
Materials Core X X X X X X X X X X X X
Motorization Upgrade X X X X X X X X X X X X X X X
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Application Modules
Greater Efficiency in All Routine Tasks
Whether for particle analysis or grain size analysis – the AxioVision application modules
offer complete application solutions for industrial practice. They have been developed
to allow reproducible results to be achieved with as little interaction as possible. The
transparent system design is identical for virtually all application modules. This is realized
by using fully automated processes – making your routine tasks faster, more efficient
and more reliable.
Operating modes
The AxioVision application modules have been system- mode. Measurements are then carried out in user mode
atically developed for use in practice and are focused on – in a simple way via a transparent user interface. The ad-
two key requirements: flexibility and security. This flexibility ministrator will have defined in advance whether and to
means being able to add in-house test specifications and what extent users can change measurement parameters
new standards independently at any time – without external here. System operation is incredibly easy and was designed
assistance or additional programming. Another benefit is to allow reproducible results to be achieved with as little
the security of knowing that there is no possibility of care- interaction as possible. The performance of a measurement
less changes to settings leading to incorrect measurement can be automated to such an extent that only the project
results. The operating concept of all application modules data need to be entered – the entire analysis process runs
is therefore based on two functional areas: all key settings automatically.
for the measurement routines are defined in administrator
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Particle Analyzer System
Particle Analysis with No Limits
The system variants of the Particle Analyzer based on SteREO Discovery.V12 and Axio Imager.Z2m Active substances in crystalline form in ointments
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NMI System
Determining Non-metallic Inclusions in Steel
Current and new industry standards define a wide range of requirements for determining
the content of non-metallic inclusions in steel. NMI is integrated into a total system with
a practical orientation and enables you to determine the content of non-metallic inclusi-
ons – reliably and with absolute precision in accordance with established steel standards.
• EN 10247
• DIN 50602
• ASTM E45
• ISO 4967
• JIS G 0555
The system variants of NMI based on Axio Imager.Z2m and Axio Observer.Z1m Results view with gallery of largest inclusions
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Grains
On the Trail of Structures
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Multiphase
Greater Flexibility for Phase Analyses
Multiphase analyzes the phase distribution in your samples for you. Phases are precisely
measured on the basis of parameters such as size, shape or orientation and document-
ed clearly in terms of the percentage of the area they represent, like classified particle
sizes or in the form of a comparison – quickly, precisely, and reliably.
Functionality
With Multiphase you decide whether you want to determine are possible. If the standard steps prove insufficient expe-
the percentage of the area that the selected phases repre- rienced users will have the option of tailoring the image
sent or the size of the individual particles of a phase. The processing steps to meet their individual requirements. The
measurement values are then classified to provide you with results are then displayed in a clearly structured report – the
a better overview. Complete flexibility is offered thanks to standard reports supplied can be modified individually.
the free definition of parameters: individual class boundar-
ies, linear or logarithmic classification, weighting on the ba-
sis of area or number. The parameters for the measurement
can be drawn freely from the complete range of AxioVision
measurement functions and even user-defined parameters
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Layer Thickness Measurement
Precision in All Layers
Functionality
Layer Thickness, which can be used universally to meet your measurement chords or the distance between the meas-
specific requirements, offers you a choice of different meth- urement chords and therefore determine the accuracy of
ods for detecting the individual layers of your samples. In the the result. This forms a clearly structured report containing
first step, the layers are identified on the basis of the color sample data and measurement values, such as the maxi-
or gray value or drawn in interactively. The module then mum and minimum chord lengths, mean, and standard de-
automatically calculates the course of the measurement viation. In addition, a distribution of the chord lengths can
chords, depending on the layer gradient present. It does this also be displayed graphically. If you wish so, you can also
precisely and individually for each layer and independently use all the other statistical analyses available in AxioVision,
of the number of layers. How the measurement will be per- which is another important advantage.
formed is always your decision. You choose the number of
Std.Dev. 1.26
15.17 Range 3.87
14.2
13.24
1 18.5 36 53.5 71
No of Chords
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Comparative Diagrams
Assessing Structural Parameters
Functionality
Comparative Diagrams, which serve as an aid for the com-
parison of samples under the microscope, are collections
of images that have been assigned certain characteristics
to – e.g. structural characteristics or good/bad preparation.
Comparative Diagrams displays the micrographs of the sam-
ples you wish to examine together with the comparative
diagrams on screen and thus makes interactive comparison
possible. The result is a table containing the comparative
diagram numbers relating to each image and a table con-
taining statistical analyses. You can also have a micrograph
displayed with an overlaid comparative diagram.
Integrated standards
It is possible to generate your own comparative diagrams
with no additional costs and no waiting time: using the wizard
User-generated: the image of the sample is flanked by two comparative diagrams
function you can adapt the comparative diagrams simply to
your own requirements. The comparative diagrams of the
following standards are included in the software package:
• EN ISO 643
• ASTM E 112
• ASTM E 1382
• BS 4990
• SEP 151061
• EN 10247
• DIN 50602
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Graphite
Classifying Graphite Particles
Whether you need to determine the size and shape of graphite particles in cast iron
in accordance with EN ISO 945 or the nodularity of vermicular graphite according to
SAE J 1887, with this application module you can measure graphite particles fully auto-
matically and with consistent analysis quality.
Functionality
Developed for the efficient measurement of graphite
with practice in mind, the Graphite module analyzes your
samples in accordance with the applicable standards. The
graphite particles are classified automatically by shape and
size. With both methods the results are analyzed according
to the specifications of the standards, archived, and docu-
mented in appropriate test reports. The Graphite module
offers the following methods:
Spheroidal graphite
Vermicular graphite
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Overview
Functions
Basic program
Image Acquisition Function Contents/Description
zvi, bmp, tif, jpg, j2k, jp2, gif, tga, png, psd, cmp, pct, ras, eps, wmf, mac, msp, img, czi, lsm, vgi, rek,
Image Formats: • Image Import
raw, avi, zvhi
• Image Export avi, bmp, j2k, jp2, jpg, Ism, mov, pct, pcx, png, psd, tga, tif, wmf
Camera Control: • Exposure Time Adjustment Manual adjustment, exposure time measurement, automatic mode
• Automatic Exposure Time Adjustment of exposure time in live image
• Target Value for Exposure Time Definition of the sensitivity level of the sensor during an exposure measurement
• Focus/Exposure Frame Optional measurement frame as a focus aid and for spot measurement of the exposure time
• Live Image Frame Rate Selection: fast/medium/slow for best possible display of the live image
• Resolution Selection of Microscanning resolution modes (AxioCam HR)
• Binning Increased camera sensitivity by combining the signals of adjacent pixels
• Color Adjustment Manual adjustment of the color balance
• Color Saturation Adjustment of the level of color saturation
• Frame Interactive selection of an image sensor sub frame
• White Balance Interactive or automatic adjustment of optimum neutral balance of the color channels
• 3200K Default value for white balance, optimized for halogen light source at 3200K
• Gray Value Scaling Adjustment of dynamic range (retain original, convert to 8 bit, convert to 16 bit)
• Histogram Intensity distribution histogram for all three color channels
• Black Reference Generation of correction image for long exposure times (dark current compensation)
• Shading Correction Generation of correction image to compensate for optical inhomogeneities
• Image Orientation Rotation and mirroring of image orientation for optimum image display
• B/W or Color Mode Conversion of color images into monochrome images during acquisition
• Digital Gain Adjustment of digital signal amplification
• Analog Gain Analog signal amplification prior to digitization
• NIR Mode for B/W Cameras Mode for further increased sensitivity in near IR for monochrome AxioCam cameras
• EMCCD Gain Adjustment of signal amplification for cameras with EMCCD sensor
• CCD Port Selection of amplifier port for cameras with several read-out amplifiers
• Offset Adjustment of basic brightness value
• Mode Selection of different, manufacturer-dependent special modes
• Unsharp Masking Sharpening of images immediately during acquisition
• Trigger Input Triggering of acquisition by means of TTL signal
• Trigger Output Triggering of a trigger signal, e.g. to control an external shutter
Image Processing
Annotate: • Annotation Addition of text, marking elements (arrows, scale bars, etc.)
Adjust: • Brightness/Contrast/Gamma Adjustment of brightness, contrast and gamma
• Color Balance Manual adjustment and readjustment of color rendition
• Hue/Lightness/Saturation Adjustment of hue and saturation
• Shading Correction Correction of uneven illumination
• Z-Stack Correction Correction of bleaching effects in z-stack fluorescence images
• Transfer display attributes Transfer of display settings (brightness, contrast, gamma) to other images
• Adjust display attributes Adjustment of display settings (brightness, contrast, gamma) to pre-defined values
• White Balance Change of white balance in a color image
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Overview
Functions
Image Analysis
Interactive • Magnetic Cursor The cursor detects edges, which facilitates the process of finding them, e.g. when measuring lengths
Measurement Tools
• Scalings Scaling in geometric units
and Parameters:
• Automatic Scaling Automatic detection of pixel size
• Create/Append Table Generation/attachment of a data table based on the measurement tools drawn in
• Length, Line Definition using 2 points
Measurement of diameter, area, perimeter, length and width of the circumscribing rectangle, radius,
• Outline/Outline (Spline)
center of gravity, mean density of gray value, standard deviation of mean density of gray value
• Angle 3, Angle 4 Definition using 3 or 4 points
Measurement of diameter, area, perimeter, length and width of the circumscribing rectangle, radius,
• Circle
center of gravity, mean density of gray value, standard deviation of mean density of gray value
• Events Counting of events
• Profile Gray value profile along a line
• Evaluate Functions for the processing and statistical analysis of data tables
Documentation
• Gallery Clear presentation of loaded images as thumbnails
• Info View Display of all information of the image
• Cut View Display of z-stack images in 3 orthogonal section views (x,y - x,z - y,z)
• Gallery View Clear presentation of multidimensional images
Comparison of up to 12 images, also multidimensional; generation of comparison as new image
• Splitter Display
document for presentation purposes
• Printing of Images/Data Print of images
• Reports Creation of user-definable reports
My AxioVision
• Toolbars/Dialogs/Workflows Creation of individual toolbars, dialogs, and workflows
• Shortcut Allocation of AxioVision functions to keyboard combinations
• Icons Allocation of symbols to AxioVision functions
• Microscope Allocation of AxioVision functions to up to 10 microscope softkeys
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Overview
Functions
33
Overview
Functions
HDR Imaging
Acquisition method for extending the available dynamic range of digital cameras
(High Dynamic Range)
• HDR Snap Generation and processing of an HDR image using pre-set parameters
• HDR Series Generation of an HDR raw data image using different exposure times
• HDR Merge Processing of an HDR raw data image to create an HDR image with offset correction
• HDR Setup Basic setting for activating HDR acquisition for all imaging techniques
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Overview
Functions
Imaging Plus Image Improvement, Gray Morphology, Fourier Transformation, Color Transformation
• Adjust
- Contrast Contrast enhancement using interactive/automatic histogram adaptation
- Negative Calculation of inverted image (negative)
- Gray Transformation Adjustment of gray values using transformation tables
• Geometric Transformations
- Rotate Rotation around an axis
- Mirror Mirror along horizontal or vertical axis
- Alignment Affine transformation
- Elastic Registration / Warping Alignment using a reference image
• Smoothing
- Denoising Denoising using wavelet transformation
- Lowpass Lowpass filter (gliding average)
- Median Median filter (non-linear method)
- Rank General rank operator
- Gauss Anisotropic Anisotropic Gauss filter with selectable Sigma values
• Sharpening
- Edge Enhancement Enhancement of edges
• Edges
- Sobel Edge detection using Sobel filter
- Laplace Laplace filter
- Highpass Highpass filter
- Local Variance Edge detection filter calculating the local variance of each pixel in relation to its neighborhood
• Morphology
- Gray Erode, Gray Dilate Erosion or dilation of objects
- Gray Open, Gray Close Erosion followed by dilation or dilation followed by erosion
- Tophat White Removal of bright regions
- Tophat Black Accentuation of dark regions
- Gray Gradient Morphological gradient to detect contours
- Watersheds Watersheds – algorithm for separation/reconstruction
• Arithmetics
- Add, Subtract Addition or subtraction of two images
- Add Constant Addition of a constant value
- Multiply, Divide Multiplication or division of two images
- Multiply Constant Multiplication with a constant value
- Average Average of two images
- Maximum, Minimum Maximum or minimum of two images
- Square, SquareRoot Square or square root of an image
- Logarithm, Exponential Logarithm or exponent of an image
- Combine Linear combination of two images
• FFT
- Transform Fourier transformation on an image
- Spectrum Calculation of power or phase spectrum
- Filter Filtering in the frequency domain using a defined filter
- Inverse Inverse Fourier transformation
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Overview
Functions
• Utilities
- Copy Region Copying of image regions
- Color Model Transformation of RGB color space into HLS color space and vice versa
- Split RGB Extractions Splitting of a RGB image into single color channels
- Combine RGB Extractions Combination of single color channels to form a color image
- User Filter Filtering of an image with user-defined filter matrix
- Generate Noise Superimposing an image with predefined noise
• Time Lapse Processing
- Gliding Average Calculation of average values from time lapse images
- Time Differential Calculation of first and second derivative from time lapse images
- Time Concatenate Combination of two time lapse images to create a new time lapse image
- Image Ratio Division of two time lapse images
- Time Lapse Alignment Alignment of the individual time points of a time lapse image
Stitching of heterogeneous ZVI time lapse images to generate one contiguous sequence to enable
- Time Stitching
movie creation from Smart Experiment results
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Overview
Functions
Execution of • Image Acquisition Image acquisition via camera, all images of a folder, all loaded images
Measurement
Activation/deactivation as well as the changing of functional parameters during execution of the
Programs • Control of Program
program
• Program Information List of executed functions with parameter settings
• Selection of Measurement Parameters Region-specific, field-specific, geometric, and annotation parameters, user-defined parameters
- Definition of Measurement Conditions Logical concatenation (and, or) of region-specific parameters, definition by simple clicking on reference
(“object filter”) objects
- Definition of a Measurement Frame Rectangle, circle, freehand
Automatic measurement of geometric and densitometric object features, drawing of measurement
- Measurement
values into the graphics plane of the image
37
Overview
Functions
38
Overview
Functions
Calotte Grinding Measurement of layers in accordance with DIN V ENV 1071 (calotte grinding method)
• Drawing in of measurement circles Drawing in of measurement circles for single or multilayer
• Analysis Automatic calculation of layer thickness, display of measurement results in image, generation of report
39
Overview
Functions
40
Overview
Region-specific Measurement Parameters
Region-specific parameters
• Geometric parameters
Interactive Measurement
Materials Packages
AutoMeasure
3D Measure
Entry-level
41
Overview
Region-specific and Field-specific Measurement Parameters
Region-specific parameters
• Geometric parameters
Interactive Measurement
Materials Packages
AutoMeasure
3D Measure
Entry-level
X X Feret Min. Angle, Feret Max. Angle Angle of the minimum and the maximum feret of the region
X Feret Min. Azimut, Feret Max. Azimut Horizontal orientation of the minimum and the maximum feret of the 3D region
X Feret Min. Elevation, Feret Max. Elevation Vertical orientation of the minimum and the maximum feret of the 3D region
X X X X Feret Ratio Ratio of the ferets (Feret Min/Feret Max)
X X X X X Diameter, Radius Diameter, radius of the circle with equivalent area/sphere with equivalent volume
X X X X Form circle, Form sphere Circular shape factor of the region/spherical shape factor of the 3D region
X X Fibre length Length of a fiber-like thin region
X X X Index/ID Explicit characteristic of the region, of the squares
X X X X Distance, Length Distance between 2 points, length of a line
X X Distances Mean Mean distance of multiple distances
X X X X Angle Measurement Angle in degrees
• Densitometric parameters
X X X X Mean Densitometric mean value of the region (gray and color values)
X X X X X Standard Deviation Standard deviation of the densitometric values of the region (gray and color values)
X X X Minimum, Maximum Minimum and maximum densitometric value (gray and color values)
X X X Sum Sum of the densitometric values of the region
X X Sum Square Sum of the squares (gray and color values)
Field-specific parameters
• Geometric parameters
X Area sum Area of all regions in scaled and unscaled units
X Area sum filled Area of all filled regions
X Area percent Percentage area of all regions in the measurement frame
X X Number of regions Number of the measured regions
X Perimeter sum Sum of all region perimeters
X Surface sum Surface content of all 3D regions
X Volume sum Volume of all 3D regions in scaled and unscaled units
X Volume sum filled Volume of all filled 3D regions
X Volume percent Percentage volume of all 3D regions in the measurement cuboid
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Overview
Field-specific and Image-specific Measurement Parameters
Field-specific parameters
• Densitometric parameters
Interactive Measurement
Materials Packages
AutoMeasure
3D Measure
Entry-level
X X Mean Densitometric mean value of all regions (gray and color values)
X X Standard Deviation Densitometric value standard deviation in all regions (gray and color values)
X X Minimum, Maximum Minimum and maximum densitometric value in all regions (gray and color values)
Further parameters
X X X X Count Number of objects clicked on
X X Marker x- and y-coordinates of an object
X X X Gray/Color Value Profiles Gray value/color value along a profile line
X X User Parameter Parameter that can be defined by the user
Image-specific parameters
X X X X X Name Name of the image
X X X X X Acquisition Time Time point at which the image was acquired
X X X X X Exposure Time Exposure time of the image
X X X X X Focus Position Focus position of the image
X X X X X Microscope Magnification Microscope magnification set during image acquisition
X X X X X Date Saved Date on which the acquired image was saved
X X X X X Stage Position X, Y x- and y-stage position at which the image was acquired
X X X X Channel Name Name of the channel for multichannel images
X X X X Phase Name/Index Phase name/index for multiphase images
X X X X Index/ID Channel Index/ID of the channel of the multichannel image
X X X X Index/ID z-plane Z-index/ID for z-stack images
X X X X Index/ID Time Time index/ID for time lapse images
Statistical parameters
Minimum, Maximum, Mean, Count, Sum, Standard Deviation, Range, Sum of squares, Variance, 25-Quartile, 50-Quartile (Median), 75-Quartile, 10-Percentile, 90-Percentile,
1-Percentile, 99-Percentile, Kurtosis, Skewness
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Materials
07745 Jena, Germany
microscopy@zeiss.com
www.zeiss.de/axiovision
Carl Zeiss Microscopy GmbH
Information subject to change.
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bleached without cholorine.
60-3-0019/e – printed 08.10