Enzymes - Pharmacy
Enzymes - Pharmacy
Enzymes - Pharmacy
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OBJECTIVES
List the properties of enzymes
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Introduction to Enzymes
Enzymes are biological polymers that catalyze the chemical reactions
which make life as we know possible.
They increase the rate of a reaction but DO NOT change the reaction
For chemical reaction to take place, the reacting molecules are required
to gain a minimum amount of energy, called energy of activation.
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Enzymes have immense catalytic powers and accelerate reactions at
least a million times by reducing the energy of activation.
Few enzymes are simple proteins while some are conjugated proteins.
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BIOMEDICAL IMPORTANCE
The presence and maintenance of a complete and balanced set of
enzymes is essential for ;
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Properties of Enzymes
1. Enzymes speed up the rate of a reaction by a factor of at least 106
3. Enzymes are specific for both the type of reaction catalysed and for a
single substrate or a small set of closely related substrates
4. Nearly all enzymes are proteins. The protein enzymes can get
denatured by extreme heat, strong acids or bases and work in a
narrow range of pH and temperature
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Properties of enzymes cont’d
5. Are stereospecific and only catalyse reactions only of specific
stereoisomers e.g. D- but no L-sugars
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Co-enzymes and Co-factors
CO-ENZYMES CO-FACTORS
Note: nearly a third of all known enzymes require one or more metal
ions for catalysis
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NOMENCLATURE AND CLASSIFICATION OF ENZYMES
The systemic names for enzymes include the substrate and the type of
reaction.
According to this system, enzymes are grouped into six main classes.
They are:
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No Class Type of reaction catalyzed
1 Oxidoreductases Catalyse oxidation reduction reaction of their substrates
e.g. alcohol dehydrogenase and lactate dehydrogenase
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SPECIFICITY OF ENZYMES
An important property of enzyme is their specificity. Specificity is of 3
different types;
1. Optical specificity:
Substrates can have optical isomers, but only one of the isomers acts as
a substrate for the enzyme activity.
2. Reaction specificity:
An enzyme can catalyze only a single type of reaction.
A substrate can undergo many reaction, each reaction catalysed by
different enzymes.
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3. Substrate specificity:
This means that certain enzymes are specific for a certain substrate.
Substrate specificity is of two type; group dependent and bond
dependent.
Group specificity - the enzyme will act only on molecules that have
specific functional groups, such as amino, phosphate and methyl
groups.
- E.g. Trypsin hydrolyses the residues of only lysine and arginine,
chymotrypsin hydrolyses residues of only aromatic amino acids.
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MODELS OF ENZYME-SUBSTRATE COMPLEX FORMATION
1) Template or Lock and Key Model
This model states that the active site already exists in proper
conformation even in the absence of the substrate.
The active site provides a rigid, pre-shaped template fitting with the
size and shape of the substrate molecule.
Substrate fits into the active site as key fits into lock, hence called lock
and key model.
Model cannot explain change in enzyme activity in presence of
allosteric modulators.
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ENZYMES EMPLOY MULTIPLE MECHANISMS TO FACILITATE
CATALYSIS
Four general mechanisms:
Catalysis by Proximity
For molecules to react, they must come within bond forming distance
of one another.
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Acid-Base Catalysis
Most cellular reactions require positive and negative charges within the
molecules to allow reaction.
The enzyme can add or remove protons from the substrate, changing
its charge; or from a neutral group of the enzyme becomes ionic.
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The advantage of using general acid–base catalysis is that at
physiological neutral pH, enzymes can catalyze a reaction even though
the concentration of OH- and H+ is low.
Catalysis by Strain
Enzymes that catalyze lytic reactions typically bind their substrates in a
conformation slightly unfavorable for the bond that will undergo
cleavage.
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Covalent Catalysis
This catalysis involves the formation of a covalent bond between the
enzyme and one or more substrates.
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The Active Sites of Enzymes Have Some Common Features
2. The active site takes up a relatively small part of the total volume of an
enzyme.
4. Most of the amino acids serve as a large scaffold to allow for the proper
alignment of the functional groups of the substrate.
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FACTORS AFFECTING ENZYMES
Temperature
pH
Enzyme concentration
Substrate concentartion
Inhibitors
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1. Temperature
As the temperature rises, reacting molecules gain kinetic energy and
this increases the chances of a successful collision and so the rate
increases.
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3. Enzyme Concentration
Rate of enzyme activity is directly proportional to
enzyme concentration as long as the substrate
concentration is in excess.
4. Substrate Concentration
Increasing substrate concentration increases the rate of reaction. This is
because more substrate molecules will be colliding with enzyme molecules,
so more product will be formed.
After a certain concentration, any increase will have no
effect on the rate of reaction, because enzymes will
effectively become saturated.
The enzyme-substrate complex has to dissociate before
the active sites are free to accommodate more substrate.
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5. Inhibitors
Enzyme inhibitors are substances which alter the catalytic action of the enzyme
and consequently slow down, or in some cases, stop catalysis.
Whenever the active site is not available for binding of the substrate the
enzyme activity may be reduced.
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ENZYME INHIBITION
The chemical substances which inactivate enzymes are called inhibitors and
the process is called enzyme inhibition.
Enzymes catalyze virtually all cellular processes, enzyme inhibitors are among
the most important pharmaceutical agents known.
For example, aspirin (acetylsalicylate) inhibits the enzyme that catalyzes the
first step in the synthesis of prostaglandins, compounds involved in many
processes, including some that produce pain.
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Reversible inhibition.
When the active site or catalytic site is occupied by a substance other than the
substrate, its activity is inhibited.
A competitive inhibitor [I] competes with the substrate for binding the active
site of a free enzyme.
While the inhibitor occupies the active site it prevents binding of the substrate
to the enzyme.
Many competitive inhibitors are compounds that resemble the substrate and
combine with the enzyme to form an EI complex, but without leading to
catalysis.
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Because the inhibitor binds reversibly to the enzyme, the inhibition can be
overcome by adding more substrate.
Clinical Significance:
Medical therapy based on competitive inhibition is used to treat patients who
have ingested methanol, a solvent found in gas-line antifreeze.
This slows the formation of formaldehyde, lessening the danger while the
kidneys filter out the methanol to be excreted harmlessly in the urine.
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Allopurinol is a drug used to treat gout. Uric acid is formed in the body by
oxidation of hypoxanthine by the enzyme xanthine oxidase. Allopurinol acts as
a competitive inhibitor of xanthine oxidase reducing uric acid formation.
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An noncompetitive inhibitor binds reversibly to both the free enzyme and
the ES complex.
The enzymes have a permanent allosteric site that can bind inhibitors
These non competitive inhibitors do not compete for the active site with the
substrate
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Uncompetitive inhibitor s are reversible inhibitors that can bind
to the ES complex rather than the free enzyme, binding to an
alternative binding site.
The inhibitor only binds after the enzyme substrate complex is formed
because only upon formation of this complex will the enzyme form a
pocket upon which the inhibitor can bind
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Irreversible inhibition
The irreversible inhibitors are those that bind covalently (or non
covalently)with or destroy a functional group on an.
Irreversible inhibitors can bind so tightly to the enzyme such that they
dissociate very slowly and therefore seem irreversible
Other irreversible inhibitors can also chemically modify and inactivate the
enzymes.
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Clinical Significance
British anti Lewesite (BAL) is used as antidote for heavy metal poisoning.
Heavy metals inhibit enzymes by reacting with –SH groups. BAL provides –SH
for the heavy metals to act on.
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Allosteric inhibition
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REGULATION OF ENZYME ACTIVITY
Regulatory enzymes exhibit increased or decreased catalytic activity in
response to certain signals.
These enzymes allow the cell to meet changing needs for energy and for
biomolecules required in growth and repair.
When the binding of substrate enhances the interaction between the allosteric
enzyme and more substrate molecules is called homotropic allosteric effects.
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Binding of the allosteric effector brings about conformational changes of the
enzyme so the affinity for the substrate or other ligands also changes.
Positive (+) allosteric effectors increase the enzyme affinity for the substrate.
The reverse is true for negative (-) effectors.
Allosteric site at which the positive effector binds is called activator site,
negative effector binds at an inhibitory site.
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In biochemical pathways, the product of one reaction becomes the substrate
for the next reaction.
After the product has been utilized and its concentration decreased, the
inhibition is relaxed, and the formation of the product resumes.
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Other enzymes are regulated by reversible covalent modification.
The covalently attached groups are removed from the enzyme by separate
enzymes.
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Coenzymes
Coenzymes ( complex organic or metalloorganic molecules) serve as
substrate shuttles
They transport substrates from their point of generation to their point of
utilization
Examples:
methyl groups (folates),
acyl groups (coenzyme A),
oligosaccharides (dolichol)
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Derivatives of B vitamins
Many coenzymes, cofactors and prosthetic groups are derivatives of B vitamins-Water-
soluble B vitamins supply important components of numerous coenzymes
Coenzyme Examples of chemical Dietary precursor in mammals
groups transferred
Biocytin CO2 Biotin
Coenzyme A Acyl groups Pantothenic acid
5’-deoxyadenosyl H atoms and alky Vitamin B12
cobalamin groups
Flavin adenine Electrons Riboflavin (Vitamin B2)
dinucleotide (FAD)
Lipoate Electrons and Not required in diet
acyl groups
Nicotinamide adenine Hydride ion (:H─) Nicotinic acid (Niacin)
dinucleotide (NAD)
Pyridoxal phosphate Amino acids Pyridoxine (Vitamin B6)
Tetrahydrofolate One-carbon groups Folate
Thiamine pyrophosphate Aldehydes Thiamine (Vitamin B1)
-many in addition contain the adenine, ribose, and phosphoryl moieties of AMP or ADP e.g.
NAD, NADP, FAD,
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Enzymes in clinical practice
The analysis of certain enzymes aids in diagnosis
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Enzymes in clinical practice cont’d
Nonfunctional plasma enzymes aid diagnosis and prognosis
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Enzymes in clinical practice cont’d
Plasma also contain other enzymes of no known physiological function
in blood
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Serum Enzyme Major diagnostic use
Amino transferases
Aspartate amino transferase (SGOT) Myocardial infarction
Alanine amino transferase (SGPT) Viral hepatitis
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KINETIC PROPERTIES OF ENZYMES
In enzyme kinetics, the reaction rate is measured and the effects of varying the
conditions of the reaction are investigated.
One of the first things that is measured in kinetics is the variation in rate of
reaction with substrate concentration.
The rate of catalysis rises linearly as substrate concentration increases and then
begins to level off and approach a maximum at higher substrate concentrations.
The saturation effect shows that all the enzyme binding sites are occupied by
substrates.
------ (1)
k1 the rate constant of the forward reaction of E+S, k-1 the rate constant of the
reverse reaction where the ES dissociates to E+S and k2 the rate constant of the
forward reaction of ES forming E+P.
The initial velocity, V0 is determined by the rate of dissociation of [ES] whose
rate constant is k2,
V0 = k2 [ES] ------ (2)
This can be simplified by defining a new constant, KM, called the Michaelis
constant:
KM = k−1 + k2 ------ (7)
k1
Substituting (7) into (6),
[ES] = [E] [S] ------ (8)
KM
Since in most situations the enzyme concentration is very small ([E] << [S]),
the concentration of the uncombined S is almost equal to the total
concentration of S.
The concentration of uncombined enzyme [E] is equal to the total enzyme
concentration [ET] minus the concentration of the ES complex.
[E] = [ET] – [ES] ------ (9)
This can now be simplified further, combining the rate constants into one
expression:
[ES] = [ET][S] ------ (16)
[S] + (k-1 + k2) / k1
Substituting KM,
[ES] = [ET][S] ------ (17)
KM + [S]
We can now express V0 in terms of [ES],
V0 = k2 [ET][S] ------ (18)
KM + [S]
This equation can be further simplified. Because the maximum velocity occurs
when the enzyme is saturated (that is, with [ES] = [ET]). Vmax can be defined as
k2[ET].
Substituting this in (18) gives,
V0 = Vmax [S] ------ (19)
KM + [S]
KM + [S] = 2 [S]
Or ,
KM = [S] ; when V0 = ½ Vmax
END
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