Thesis Vre Edited
Thesis Vre Edited
Thesis Vre Edited
Introduction
Introduction:
Aim:-
The thesis aims to elucidate the significance of VRE within the broader context of antibiotic
resistance. By comprehensively understanding VRE's impact, the thesis seeks to guide
effective prevention and control strategies that have implications not only at a local level.
Expected Contributions:
Local Impact: The thesis aims to make meaningful contributions to the local understanding
of VRE. By addressing gaps in knowledge specific to our region, the research intends to
inform targeted prevention strategies, contributing to improved healthcare practices and
policies at the local level.
Global Relevance: Beyond its local impact, the findings of the thesis may have broader
implications for global efforts to combat antibiotic resistance. By providing insights into the
epidemiology, clinical features, and preventive strategies for VRE, the research aims to
contribute to the global discourse on antibiotic resistance, influencing future research
directions and public health initiatives.
CHAPTER-3
REVIEW OF LITERATURE
Definition:
Vancomycin-resistant Enterococcus (VRE) poses a significant threat to public health,
particularly in healthcare settings. The rise of antibiotic resistance, coupled with limited
treatment options, has heightened concerns about the clinical impact and management of
VRE infections.
This literature review aims to explore various aspects of VRE, including its definition,
epidemiology, clinical manifestations, diagnostic methods, prevention strategies, and the
significance of further research.
The introduction sets the stage for the literature review, emphasizing the importance of
understanding and addressing VRE in the context of antibiotic resistance and healthcare-
associated infections. It outlines the objectives of the review, which include synthesizing
existing research, identifying gaps in knowledge, and informing evidence-based practices.
Vancomycin-resistant Enterococcus (VRE) refers to strains of enterococci that have acquired
resistance to vancomycin, a critical antibiotic used to treat severe infections. Enterococci are
gram-positive bacteria commonly found in the gastrointestinal tract and the environment.
While they are often harmless commensals, certain strains have developed resistance
mechanisms, rendering them resistant to multiple antibiotics, including vancomycin.
Examples of VRE:
Examples of VRE infections encompass a wide range of clinical conditions, from relatively
mild urinary tract infections (UTIs) to life-threatening bloodstream infections (BSIs) and
endocarditis. VRE has also been implicated in surgical site infections (SSIs) and other
healthcare-associated infections, posing challenges for patient management and infection
control.
Causes of VRE:
The development of VRE resistance is multifactorial and often involves the acquisition of
specific genetic elements encoding resistance mechanisms. The most common genetic
determinants of VRE resistance are the VanA, VanB, and VanC genes, which encode
enzymes responsible for altering the bacterial cell wall structure, reducing the binding
affinity for vancomycin.
These genes are typically carried on mobile genetic elements, such as plasmids or
transposons, facilitating their horizontal transfer between bacteria.
The selective pressure exerted by the widespread use of vancomycin in clinical practice has
contributed to the emergence and spread of VRE strains.
Prolonged or inappropriate antibiotic use, inadequate infection control practices, and
environmental contamination further promote the dissemination of VRE within healthcare
settings.
Diagnosis of VRE:
Accurate and timely diagnosis of VRE is essential for guiding appropriate patient
management and implementing infection control measures. Laboratory diagnosis of VRE
primarily relies on culture-based methods and molecular assays.
Culture-based techniques involve isolating enterococcal colonies from clinical specimens,
such as urine, blood, or wound swabs, and testing their susceptibility to vancomycin using
standard microbiological techniques. These methods provide valuable information about the
presence of VRE and its antimicrobial susceptibility profile.
Molecular assays, such as polymerase chain reaction (PCR) and sequencing, offer a more
rapid and sensitive approach to detecting VRE. These methods target specific genetic
markers associated with vancomycin resistance, allowing for the direct identification of
resistance genes, such as VanA, VanB, and VanC. Molecular diagnostics play a critical role
in confirming VRE infections, particularly in cases where culture-based methods may yield
false-negative results or take longer to produce conclusive findings.
Preventive Measures:
Preventing the transmission of VRE requires a comprehensive and multifaceted approach that
encompasses antibiotic stewardship, infection control practices, environmental management,
and surveillance. Antibiotic stewardship programs aim to optimize antibiotic use by
promoting judicious prescribing practices, minimizing unnecessary antibiotic exposure, and
reducing the selective pressure for resistance. These programs involve the implementation of
antimicrobial guidelines, antimicrobial stewardship teams, and educational initiatives aimed
at healthcare providers.
Infection control practices play a crucial role in preventing the spread of VRE within
healthcare facilities. Standard precautions, such as hand hygiene, contact precautions, and
environmental cleaning, are essential for minimizing the risk of transmission. Adherence to
strict isolation protocols for colonized or infected patients, including the use of single-room
accommodations and dedicated equipment, helps prevent cross-contamination and
nosocomial outbreaks.
Environmental management strategies focus on reducing environmental contamination and
interrupting the transmission cycle of VRE. Routine cleaning and disinfection of high-touch
surfaces, medical equipment, and patient care areas are essential for minimizing the risk of
VRE transmission. Enhanced environmental surveillance, including environmental sampling
and monitoring, can help identify reservoirs of VRE within healthcare facilities and guide
targeted interventions to mitigate transmission.
Significance of Our Study:
While significant progress has been made in understanding and managing VRE, several
knowledge gaps persist, particularly in the context of local epidemiology and prevention
strategies. Our study aims to address these gaps by investigating the specific risk factors,
transmission dynamics, and effectiveness of preventive measures in our healthcare setting.
By identifying local trends and challenges related to VRE, we seek to inform evidence-based
practices and develop targeted interventions to mitigate VRE transmission and improve
patient outcomes.
Furthermore, our study contributes to the broader understanding of VRE epidemiology and
prevention strategies, offering insights that may inform healthcare practices and policies
beyond our institution. By sharing our findings with the broader scientific community, we
hope to contribute to the collective effort to combat antibiotic resistance and safeguard
public health.
Conclusion:
In conclusion, VRE represents a significant challenge in healthcare settings, requiring
comprehensive strategies to prevent transmission and minimize the clinical impact of
infections. This literature review has provided an overview of various aspects of VRE,
including its definition, epidemiology, clinical manifestations, diagnostic methods,
prevention strategies, and the significance of further research. By synthesizing existing
knowledge and highlighting areas for further investigation, we aim to contribute to the
ongoing efforts to address the global threat of antibiotic resistance and improve patient care.
CHAPTER-4
MATERIAL AND METHOD
Sample Processing
The study was conducted at All India Institute of Medical Science and Research (AIIMS),
Rishikesh. Sample were collected from patients of all age groups and both sexes. Clinical
history of the patients was taken regarding age, sex, date of admission, department,
antibiotic, treatment, date of discharge etc. and recorded in the patient’s proforma.
Sample were collected from Blood, Urine, and Container and transported to the lab.
Inoculation of samples on culture media
Urine and Blood samples collected were inoculated on blood agar and Clad agar plates
under strict aseptic conditions. Plates were incubated at 37 degree C for 24 – 48 hours under
aerobic condition.
Study by work flow chart:-
LF, grey colonies on Blood Agar and Yellow colonies on Cled Agar
RI- 48 hours
MATERIAL:-
• Blood agar
• Vitek2 compact, AST card, antibiotics, Vitek Densichek
• Biosafety cabinet
• Spirit lamp, loop, tubes
• Samples – Blood, Urine
• Slide
• Normal saline solution
• Incubator
• Petri plate
PROCEDURE
Composition of Blood Agar:-
pH 7.4
Method of preparation:-
Ingredients g/litre
Lactose 10.0
L -Cystine 0.0128
Agar 15.0
Method of preparation:
Prepared Appearance:
o Green to blue green coloured, clear to slightly opalescent gel form in
petri dishes.
o Small yellow colonies on clad.
VITEK 2 COMPACT:-
BIOMERIEUX
AUTOMATED VALIDATION OF EVERY RESULTs
VITEK 2 is an automated system that performs identification of microorganisms
(Bacterial) and antibiotic susceptibility testing. VITEK 2 technology represents a
Smarter way to automate ID/AST testing. It provides, automatic standardized
Validation of every test result with next generation expert software, the ADVANCED
EXPERT SYSTEM.
Identification of the test organism done by VITEK 2 Compact automated system.
Sample processing in VITEK 2 compact: for GN- 406
Sample Preparation:
1. All the cultures have to be 18 to 24 hours old before testing on the machine.
2. Select the VITEK 2 compact cassette with labelled barcode defining cassette
Number and fit the polystyrene tubes in the cassette.
3. Then take 3ml sterile VITEK Saline in the polystyrene tubes provided.
4. Select the isolated colonies from the selected plate and suspend in VITEK
Saline with the help of a sterile pipette tip.
5. Make a uniform suspension and Vortex it thoroughly.
6. Check the inoculum density and adjust it with volume the use of the Dens check
And making it 0.5 Mc Far land Standard.
7. Transfer 280 ml for AST Gram negative bacteria.
8. The selected cards (406 for non- lactose fermenting bacteria) are then ready for
Inoculation.
9. Put the selected cards in the inoculums in selected polystyrene tubes.
10. All the inoculums in the cassette are ready to put inside the filling section of
The machine. The time duration of insertion must not exceed 30 minutes after
Inoculating cards.
Sample Loading:
1. Load the cassette into the filler door.
2. Press “Fill” on the user interface screen.
3. Filling takes 70 seconds.
4. When filling is finished, the blue indicator light on the instrument flashes.
5. Enter cassette into the Load door.
6. Barcodes are scanned and checked against the Main Virtual Cassette
Electronic work list.
7. Straws are sealed.
8. Cards are loaded into the carousel.
9. Discard cassette waste when it is finished.
10. Flashing blue arrow on the instrument indicates loading is finished.
Entering Cassette Worksheet Information:
Cassette Worksheet information is entered into the system software
According to the user manual given by Biomerieux and is saved in the
System.
11. Results of identification and Antimicrobial Susceptibility of test organism
Obtained after 18 hours.
Broth Micro Dilution
Broth dilution is a technique in which containers holding identical volumes of
broth with antimicrobial solution in incrementally (usually geometrically)
Increasing concentration are inoculated with a known number of bacteria.
Broth micro dilution denotes the performance of the broth dilution test in
Micro dilution plates with a capacity of <500ul per well.
The methods described in this document are intended mainly for the testing of
pure culture of aerobic bacteria that are easily grown by overnight incubation
On agar and which grow well in Mueller-Hinton Agar.
Organism Growth Monitored:-
Using one self-contained disposable AST card per patients isolate, tests will be
performed on the VITEK2. In addition to multiple wells with progressively higher
levels of various antibiotics in broth, each card also includes at least one positive
control well that is devoid of any antibiotics (growth-promoting soup only).
All well’s growth is regularly monitored by VITEK2. A preset minimal level of
bacterial growth in positive control wells is monitored until turbidimetry (i.e., percent
change in raw transmittance units -%RTU) detects it.
Growth in the control wells proves the test isolate is visible and expanding at the right
rate to start analysing the various drug wells. Up until the sensitivity test is finished,
this analysing is repeated every 15 minutes.
Different techniques are used to measure the amount of microbial growth in both
antibiotic wells and positive control wells. Additionally compared to the growth in
positive control wells is the relative growth of bacteria in antibiotic well.
Inoculation
Identification card are inoculated with microorganism suspensions using an integrated
vaccum apparatus.
A test tube contain microorganism suspension is placed to a special rack and the
identification card is place in the neighbouring slot while inserting the neighbouring
slot while inserting the transfer tube into the corresponding suspension tube.
IPD 47
OPD 14
FIG 5.1: - showing of the infected patients sample retain by IPD AND OPD.
No. of cases
20; 16%
FIG: 5.2 - showing of the sex distribution of studied patients suffering to VRE
Table no.5.3: Distribution of infected patients according to age
Infected Patients
Age groups (years) Number (%)
10-20 13 0.0021%
20-40 20 0.0032%
40-50 10 0.0001%
50-60 2 0.00032%
60-70 11 0.0018%
70-80 1 0.00016%
Infected patients
1; 2% 10-20age
11; 19% 13; 23% 20-40 age
40-50 age
50-60
2; 4%
60-70
70-80
10; 18%
20; 35%
FIG: 5.3:- showing of the Distribution of infected patients according to age category.
Table no.5.4: Distribution of infected patients’ based on the sample type.
Sample type No. of patients IPD OPD
Blood 10 9 1
Urine 51 38 13
FIG: 5.4:- showing of the Distribution of infected patients based on the sample type.
General Medicine 6
Pediatric 6
General Surgical 2
Neurosurgery 1
Emergency 2
Pulmonary medicine 3
Ortho 1
Surgical Gastrointestinal 11
Obstetrics and Gynaecology 4
oncology 1
urology 22
Neonate 2
22
11
6 6
4
3
2 2 2
1 1 1
G.M. PEDI- G.S. NEURO EMER- P.M ORTHO SURGI- GY- ON- UROL- NEONA
ATRIC GENCY CAL NAE- COL- OGY TE
GAS- COL- OGY
TRO OGY
PA- 6 6 2 1 2 3 1 11 4 1 22 2
TIENTS
NO. PATIENTS NO.
FIG: 5.5:- showing of the Distribution of infected patients based on the department.
CHAPTER-6
DISCUSSION
DISCUSSION
Vaccination Strategies:
Developing effective vaccination strategies is a promising avenue for preventing VRE
infections.
Immunogenicity Studies: Current research, exemplified by Fowler et al. (2019), explores
the immunogenicity of vaccines against antibiotic-resistant bacteria, providing insight into
potential preventive measures. Understanding the immune response generated by these
vaccines is crucial for their development and implementation.
Public Health Campaigns: Raising awareness about the importance of vaccination through
public health campaigns is essential. Educating the public about the benefits of vaccination
not only contributes to community-wide protection against VRE but also fosters a proactive
approach to infectious disease prevention.
CHAPTER-8
SUMMARY