Exp 2 Formal Report
Exp 2 Formal Report
Exp 2 Formal Report
Ante, John Michael Cinco, Josemaria Antonio Cruz, Albert Kevin De la Paz, Fallen Grace Gubatan, Glenn
INTRODUCTION
Proteins
formed by two or more amino acids bonded by peptide bonds Roles: structure, enzymes, and hormones etc Proteins can be broken down by chemical or mechanical forces in a process called denaturation
Amino Acids
Amino Acids are biological molecules composed of an amino group and a carboxyl group Only 20 are usually found in proteins All amino acids (except glycine) exhibit optical activity due to the presence of an asymmetric Carbon atom.
Amino acids have R-Groups and are classified according to these groups They are based mainly on two criteria namely:
Polarity of side chains or Acidic or Basic side chains
Aside from glycine, most of the amino acids are chiral but are usually found in their L-form
CASEIN
Most important protein in milk making up 80% of the proteins in cow milk and between 20% and 45% of the proteins in human milk. Hydrophobic= poorly soluble in water (H2O)
Acid Hydrolyzate
Tryptophan is destroyed Serine and threonine are decomposed to some extent
Base Hydrolyzate
Racemization Decomposition of Threonine, Serine, Arginine and Cysteine
Color Reactions
functional groups in amino acids and proteins react to produce colored product. color intensity varies in proportion to the number of reacting functional or free groups and their accessibility to reagent.
OBJECTIVE
To characterize acid/base hydrolyzate and intact protein casein using various chemical tests
METHODOLOGY
PROTEIN SUSPENSION
HYDROLYZATE
Sakaguchi Test
5 drops of Protein Susp.
+1 drop 10% NaOH +1 drop 0.02% naphthol solution Mix +1 drop 2% NaOBr after 3 min. Note color
5 drops hydrolyzate
Biuret Test
3 drops protein suspension 3 drops hydrolyzate
+1 drop 2.5M NaOH +0.01M CuSO4 Mix Note color
NINHYDRIN TEST
10 drops of Protein Susp.
+1 ml H2O
1 ml of undiluted hydrolyzate
XANTHOPROTEIC TEST
10 drops protein susp. + 1ml H20
1 ml hydrolyzate
+ 3 drops HNO3 Mix Note color Heat 1 min. in water bath Add NaOH dropwise
Alkaline Solution
+ 2mL of Hopkins-Cole reagent and mix Incline the tube + 2mL of conc. H2SO4 Color of interphase noted
Results
Intact Casein Grp # Biuret Test Sakaguchi test Ninhydrin test Xanthoproteic test HopkinsCole Test
Purple interphase
Light violet solution with light violet ppt Murky soln w/ purple ppt
clear Orange soln Colorless w/ yellow ppt Yellow-orange soln w/ whitish yellow ppt
White
Purple interphase
Purple soln
Purple interphase
Orange soln
Purple interphase
Intact Casein
Grp # 6 Biuret Test
Purple soln
Sakaguchi test
Orange soln
Ninhydrin test
Clear w/ light violet ppt.
Xanthoproteic test
Clear soln w/ white ppt Red orange ppt
Hopkins-Cole Test
White interphase
Turbid soln w/ white particles Orange soln w/ big red& fine white ppt
Purple soln
Red-orange soln
colorless soln, white ppt Red orange ppt w/ yellow translucent soln
10
Orange soln
Purple interphase
Acid Hydrolyzate
Group # 1 Biuret Test Sakaguchi test Ninhydrin Test maroon clear solution Xanthoproteic test Hopkins-Cole Test Colorless interphase
Blue soln
Orange soln
Maroon/ Yellow soln dark red soln Red orange soln w/ susp. particles Clear brown liquid Clear, light yellow soln Red-orange soln w/ suspended particles
Deep translucent
No interphase
Base Hydrolyzate
Grp # 2 Biuret Test Clear gray soln Sakaguchi test Clear light yellow soln Light yellow soln Ninhydrin Test Dark reddish brown non turbid soln Brown clear soln Xanthoproteic test Yellow soln Dark orange soln Small yellow ppt, cloudy white soln Hopkins-Cole Test Pinkish interphase Light purple interphase
DISCUSSION
Biuret Test
Addition of 2.5M NaOH was needed to form an alkaline solution which is needed for a positive result. Copper(II) ion from CuSO4 reacts with the amide N atoms in a peptide bond Positive result: violet color
Results
O O H N O R H N H Cu
+ 2
H R H
O N H
Results
Sakaguchi Test
presence of arginine Positive result: red-orange to red-colored solution Guanido group in arginine reacts with naphthol in the presence of an oxidizing agent to give off the red color. Condensation reaction
Sakaguchi test
H3 N H3 N
+ +
O O
-
O O NH
-
OH + 2 OH
-
N N
H N
N H
N H2
OH
Sakaguchi Test
Addition of 10% NaOH: catalyzes the reaction Addition of 0.02% naphthol solution: condensation reaction with arginine Addition of 2% NaOBr after 3 minutes: NaOBr and NH in guanido group produces a red complex
Sakaguchi Test
Positive result for Intact casein and acid hydrolyzate. Arginine is present. Base hydrolyzate will give off a light yellow or yellow-orange solution. Alkaline hydrolysis decomposes arginine.
Results
Sakaguchi Test
Possible errors:
Solution will lose its red coloration if left for an extended period of time Errors for Acid hydrolysis: hydrolyzate will require neutralization by addition of a base. If excess base is added, arginine may be destroyed.
Results
NINHYDRIN TEST
detect ammonia or primary and secondary amines free -NH2 group and proteins W/ free amino group reacts with ninhydrin purple-blue complex. Ruhemann's purple = reacts to free amines Most of the amino acids, except Proline, are hydrolyzed and react with ninhydrin *PROLINE GIVES A COLOR YELLOW
Ninhydrin degrades amino acids into aldehydes, ammonia, and CO2 the net result is ninhydrin in a partially reduced form hydrindantin:
Ninhydrin then condenses with ammonia and hydrindantin to produces an intensely blue or purple pigment, sometimes called Ruhemann's purple:
PROTEIN SUSPENSION
NINHYDRIN TEST Light violet solution with purple precipitate
ACID HYDROLIZATE
Violet/Dark violet
BASE HYDROLIZATE
Violet/Dark violet
Intact Casein
Base hydrolyzate
Positive Positive
Positive
3
4 5 6
Positive
Positive Positive Positive
Positive
Positive Positive Positive
7
8 9 10
Positive
Positive Positive Positive
Positive
Positive Negative Positive
Results
Xanthoproteic Test
Tyrosine, Tryptophan, Phenylalanine Electrophilic aromatic substitution Reagents: conc. HNO3, conc. NaOH Positive Result:
Yellow ppt. after addition of conc. HNO3 Orange ppt. after addition of conc. NaOH
Results
O N H3 HNO 3
HO
O N H3 OH N O
-
Yellow Precipitate
Salt
Results
Grp #
Grp #
INTACT CASEIN
1 Light yellow ppt. colorless soln Darker yellow ppt, yellow soln 2 clear Orange soln 3 Yellow soln Yellow-orange soln w/ whitish yellow ppt 4 Small yellow ppt w/ cloudy white soln Clear orange soln yellow orange ppt 5 Clear, colorless w/ suspended particles Orange soln w/ suspended particles
colorless soln, white ppt Red orange ppt w/ yellow translucent soln
10
Acid Hydrolyzate Group # Group # 1 Xanthoproteic test 2 Bright yellow clear soln
Hopkins-Cole Test
One of the color reaction tests which is used to detect the presence of Tryptophan in the solution
Tryptophan
protein solution is hydrolyzed by the conc. H2SO4 at the solution interphase The indole group of free Tryptophan reacts with glyoxylic acid to produce purple product
(+) Positive results = violet ring formed in the junction / purple interphase
Protein Acid Base Suspension Hydrolyzate Hydrolyzate HopkinsCole Test
Purple Interphase (+)
Colorless Interphase
(-)
Results
Additional Reactions
Paulys Diazol test detection of Tryptophan or Histidine reagent: sulphanilic acid dissolved in hydrochloric acid Forms a diazonium salt The diazonium salt couples with tyrosine or histidine in alkaline medium result: red coloured chromogen (azo dye)
Millons Test
- tyrosine reacts with Millons reagent - Millons rgt: Mercurous nitrate in HNO3 - Positive: flesh to red complex upon heating.
Conclusion
Through various color reactions, intact casein, and base and acid hydrolyzate were known to contain different amino acids as part of their composition.
Reference
Milio, Frank R., & Loffredo, William E. (1995). Qualitative Testing for Amino Acids and Proteins. Modular Laboratory Program in Chemistry Benedict, Stanley R. (1999). A Note on the Preparation of Glyoxylic Acid as a Reagent. The Journal of Biological Chemistry Bettelheim, F., Vandesberg, J., (2013). Laboratory Experiments for Introduction tp General, Organic, and Biochemistry (8th Ed). Brooks/Cole, Cengage Learning: USA. http://amrita.vlab.co.in/?sub=3&brch=63&sim=1094&cnt=1 Retrieved July 5 2013 http://prezi.com/knbu2alx8prs/copy-of-results/ Retrieved July 5 Clark, J.M. Jr., Experimental Biochemistry. 1964. New York: W.H. Freeman and Company. pp. 69-96. Espino-Cabatit, B., Biochemistry, 12e.1988. Philippines: UST Publishing House. pp. 135-138, 141, 142-144