Kana
Kana
Kana
GCMHS
INSTITUTE OF PUPLIC
HEALTH
1
TEMESGEN Y
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Course objective
2
Course contents
3
1) Introduction to epidemiology
2) Natural history of disease & level of prevention
3) Infectious disease epidemiology
4) Measures of morbidity & mortality
5) Sources of epidemiological data
6) Descriptive epidemiology
7) Analytic epidemiology
8) Measures of association
9) Establishing causation
10) Public health surveillance system
11) Outbreak investigation & control
12) Screening & diagnostic tests
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Teaching methods
4
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Evaluation methods
5
1) Continuous assessment=50%
o) Attendance
o) Quiz
o) Test/mid exam
o) Assignment
o) Class participation
2) Summative assessment=50%
o) Final written examination from all chapters of
the course
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REFERENCES
6
Chapter one
7
Introduction
to Epidemiology
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objectives
8
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Epidemiology
Definition, scope, uses and assumptions
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EPIDEMIOLOGY
10
frequency,
distribution and
determinants of diseases and health
related states or events in specified human
populations and the application of this study
to the promotion of health and to the
prevention and control of major health
problems
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Contd
12
Health
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Contd
13
The
Where?
When? What?
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Contd
14
Contd
15
health problems.
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History of Epidemiology
16
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Contd
17
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Contd
18
Contd
19
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Contd
20
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Contd
21
Contd
22
In
Twenty
Contd
23
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Scope of Epidemiology
24
Originally,
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Contd
25
Purpose/Use of Epidemiology
26
study
the
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Contd
30
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workers
Survey of available health records
Field survey.
Compilation and analysis of the data.
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Contd
32
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fatal)
Feasibility (availability of financial and material
resource, effective control method)
Community concern (whether it is a felt problem
of the community)
Government concern (policy support, political
commitment)
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Contd
35
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Risk Factors:
36 an increased or
any factor associated with
Contd
37
38
Thank u!
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Chapter Two
39
Cause of a disease
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40
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Contd
41
Contd
42
B.
Risk
factor(
aggravating,
predisposing
,contributing factor):
These are not the necessary causes of disease but they are
important for a disease to occur.
Risk factors could be related to the agent, the host and the
environment.
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Principle of Causation
Namely:
43
Supernatural theory
Hippocratic theory
The single germ theory (Henle-Koch postulate)
Classic epidemiological theory
The ecological approach
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Luis
Pasteur
isolated
microorganism.
This
culture
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ROBERT KOCH
45
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Contd
46
culture.
The
animal
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47
infectious agent.
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Contd
49
Contd
50
the
conditions
of
the
host
and
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Contd
51
Sufficient cause:
A set of conditions without any one of which
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Contd
52
Etiology of disease
53
disease.
These factors are related to agent, host and
environment.
The Agent:
Contd
Nutritive
element:
54
Excessive(
Cholesterol),
Infectious
Agents:
Metazoa
(Hookworm,
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Contd
55
or response to agents.
Genetic, Age, Sex, Physiologic state, Pregnancy,
Puberty, stress
Immunologic condition(Active immunity & Passive
immunity)
Human behavior; Hygiene, Diet handling
* Host factors result from the interaction of genetic
endowment with the environment.
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Environmental Factors
Influence
56
agent
A.
Biological environment
Infectious
agents
Reservoirs (man, animal, soil)
Vectors (flies, mosquitoes)
B.
Social environment
Socioeconomic
care.
Eg. types of food eaten; practice of wearing shoes; general level of
receptivity to new ideas;
C. Physical environment
.
Heat,
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Contd
57
Agent
Host
Environment
59
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60
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Contd
61
host,
agent,
and
environment
can
coexist
harmoniously.
Disease and injury occur only when there is
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Contd
62
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Contd
Agent: needs suitable63environment to grow and
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Contd
65
Cont
d
66
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67
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3. Wheel model
68
The
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Contd
69
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Contd
70
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Contd
71
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72
THANK YOU
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Chapter Three
73
. Natural
History of Disease
and Levels of Prevention
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75
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77
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Stage of susceptibility
Examples:
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80
The
Clinical
By this
stage stage
the person
has developed signs
disability or death.
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Contd
81
Examples:
Common cold has a short and mild clinical stage
and almost everyone recovers quickly.
Polio has a severe clinical stage and many patients
develop paralysis becoming disabled for the rest of
their lives.
Rabies has a relatively short but severe clinical
stage and almost always results in death.
HIV/ AIDS has a relatively longer clinical stage and
eventually results in death.
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83
Examples:
Trachoma may cause blindness
Meningitis may result in blindness or deafness.
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84
Healthy person
Recovery
Recovery
Clinical disease
Disability
Death
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Disease progression
86
Exposure
Infection
Infectiousnes
s
(Infection
Rate)
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Disease
Pathogenecity
(clinical :
subclinical)
Disease
outcome
Virulence
(CFR, HR)
87
1. Strain of agent
2. Dose of agent
3. Route of infection
4. Host age
5. Host nutritional status
6. Host immune response
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The
1. Primary prevention
89
Is
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90
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91
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92
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2. Secondary prevention
93
Examples:
3. Tertiary prevention
94
95
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Quiz
96
following sentences?
1. INH prophylaxis for TB people living with HIV
2. Doxcycycline prophylaxis for malaria
3. Nutritional counseling for malnourished individual
4. TT vaccination for a pregnant women
5. Passive joint movement for polio to prevent
deformity
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97
. THANK
YOU
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Chapter Four
98
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Learning objectives
99
disease
Identify factors that affect person-to-person infectious
disease transmission
Describe the type of carriers and roles in the infectious
disease transmission
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disease process)
components:
includes
the
following
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1. Agent
103
infectious disease .
E.g
metazoan ,protozoa , bacteria , fungus
,Virus.
o The agent causes infection and disease depending
on its basic biological characteristics
o The outcomes of exposure to infectious agent can
be depends on:
Infectiousness
Pathogenecity
Immunogenicity
Virulence
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104
2. The reservoir
105
Types of reservoirs:
A. Man
Measles, smallpox, typhoid, N.meningitis,
gonorrhea, syphilis
The cycle of transmission is from man to man.
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Contd
107
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Contd
108
C. Non-living things
Usually saprophytes living in soil
e.g. clostridium tetani
clostridium botulinum etc
A person who does not have apparent clinical
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Type of carriers
109
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110
111
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Case
s
Carriers
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Non detectability
Chronicity
Mobility
Number
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3. Portals of exit
114
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Portal of exit
115
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Contd
116
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4. Modes of Transmission
117
Direct transmission
Indirect Transmission
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Direct transmission
118
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o
o
o
o
Touching:
Trachoma (eye-hand-eye)
Common cold (nose-hand-eye)
Shigellosis (feces-hand-mouth)
Viral hepatitis and HIV (through breaks in skin)
Sexual intercourse: HIV/AIDS
kissing : mononucleosis
Passing through birth canal: Gonorrhea
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c) Trans-placental transmission
121
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Indirect transmission
122
a) Airborne transmission
b) Vehicle borne transmission
c) Vector borne transmission
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a) Airborne transmission
123
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.:
124
A vehicle is any non-living
substance or object
by which an infectious agent can be
transported into a host through a suitable
portal of entry.
Examples: food, milk, water, soil, etc.
These
127
Often,
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5. Portal of Entry
128
Portal of entry
129
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130
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Incubation period
137
clinical onset
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Communicable period
138
Latent period
139
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ss
140
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141
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143
period of communicability.
N.B. Isolation is indicated when diseases:
have high mortality and morbidity.
have high infectivity
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144
c.
d.
e.
f.
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146
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147
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Quiz
148
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149
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150
CHAPTER 5
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Frequency measures
Ratios, Proportions and Rates
152
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153
Ratio
A ratio quantifies the magnitude of one occurrence
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Proportion
154
whole values
o It is a type of ratio in which the numerator is
included in the denominator
o Proportion may be expressed as a decimal, a
fraction, or a percentage
o In a proportion, the numerator must be included in
the denominator
o Its result ranges between 0 and 1 or (0100%)
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Rate
155
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156
time dimension
over time
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Type of rates
157
Crude rate
Specific rate
Standardized rate
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Crude rates
158
o Summary rates
o Based on numbers of events
X 1000
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Mortality rates
159
of time
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Advantages
161
Disadvantages
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Specific rates
162
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163
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164
Advantages
Disadvantages
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Adjusted rates
165
Summary rates
Permit unbiased comparison
Easy to interpret
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166
Disadvantages
Fictitious rates
Absolute magnitude depends on standard population
Opposing trends in subgroups masked.
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Aims of standardization
167
exposure groups
o Accounts
of
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Types of standardization
168
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o It requires:
1. Standard population to which the estimated
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Column A
DEATHS
Column B
POPULATION
<1
12
22,487
85+
271
3,094
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171
population.
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Column C
.000534
Column D
X
15,343
Column E
=
8.193
.087589
2,770
242.622
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Contd
173
AGE
(A)
D
E
A
T
H
S
<1
12
85+
(B)
COUN
TY
POPU
LATIO
N
/
271 /
22,487
3,094
(C)
AGESPEC
IFIC
RATE
S
=
.000534
.087589
(D)
STAND
ARD
POPUL
ATION
X
15,343
2,770
(E)
EXPE
CTED
DEAT
HS
=
8.193
= 242.622
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Contd
174
175
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US 1940 population
US 2000 population
European standard population
WHO world population
National population/general population
One of the study populations (larger population)
Sum of the study populations
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direct standardization
177
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Population A in 1995
Age
Popul.
# Deaths
% of Popul.
Death Rate
0 to 14
190,703
174
21.4%
0.0009
15 to 24
115,928
115
13.0%
0.0010
25 to 44
289,441
620
32.4%
0.0021
45 to 64
180,396
1,435
20.2%
0.0080
65 +
116,406
5,657
13.0%
0.0486
TOTAL
892,874
8,001
100.0%
0.0090
178
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Population B in 1995
179
Age
Popul.
# Deaths
% of Popul.
Death Rate
0 to 14
138,986
116
15.9%
0.0008
15 to 24
83,815
63
9.6%
0.0008
25 to 44
239,396
498
27.3%
0.0021
45 to 64
190,427
1,421
21.7%
0.0075
65 +
223,576
10,326
25.5%
0.0462
TOTAL
876,200
12,424
100.0%
0.0142
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A + B
Death Rate
Expected Deaths
Age
Population
0 to 14
329,689
.0009
.0008
296
263
15 to 24
199,743
.0010
.0008
199
159
25 to 44
528,837
.0021
.0021
1,110
1,110
45 to 64
370,823
.0080
.0075
2,966
2,781
65 +
339,982
.0486
.0462
16,523
15,707
TOTAL
1,769,074
-----
-----
21,094
20,020
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Death Rate
Expected Deaths
Age
Populatio
n
0 to 14
329,689
.0009
.0008
296
263
15 to 24
199,743
.0010
.0008
199
159
25 to 44
528,837
.0021
.0021
1,110
1,110
45 to 64
370,823
.0080
.0075
2,966
2,781
65 +
339,982
.0486
.0462
16,523
15,707
Total
1,769,074
-----
-----
21,094
20,020
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Solutions
183
Exercise -1
184
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Measure of mortality
185
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Measures of morbidity
199
of
occurrences (frequencies)
o Morbidity encompasses disease, illness, injury,
Measure of morbidity
200
o Incidence
o Prevalence
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Incidence
201
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Contd
202
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is population at risk.
For incidence to be meaningful, any individual
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Types of incidence
204
of a candidate
population that becomes diseased over a
specified period of time
Contd
205
Contd
206
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208
Example A: In the study of diabetics, 100 of the 189 diabetic men died during the 13year follow-up period.
Calculate the risk of death for these men.
Numerator = 100 deaths among the diabetic men
Denominator = 189 diabetic men
Risk = (100 / 189) x 100 = 52.9%
Example B: In an outbreak of gastroenteritis among attendees of a corporate picnic,
99 persons ate potato salad,30 of whom developed gastroenteritis.
Calculate the risk of illness among persons who ate potato salad.
Numerator = 30 persons who ate potato salad and developed
gastroenteritis
Denominator = 99 persons who ate potato salad
Risk = Food-specific attack rate = (30 / 99) x 100 = 0.303 x 100 =
= 30.3%
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IP = 3/5 = 0.6
2. Incidence Density
210
An incidence rate whose denominator
is calculated using
person-time units.
the occurrence of new cases of disease that arise during
person- time of observation
Similar to other measure of incidence, the numerator of the
at risk or the sum of the time that each person remained under
observation, i.e., person time denominator.
This is particularly when one is studying a group whose
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of person-time observation
o The assumption is dynamic population at risk
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212
Incidence rate
Definition of incidence rate contains three
components:
o New cases
o Period of time time under follow up
o Population at risk
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Contd
213
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Incidence rate
214
onset of disease
death
lost to follow-up
end of the study
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Contd
215
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Person-time
216
217
Example 1 : The diabetes follow-up study included 218 diabetic women and 3,823
non diabetic women. By the end of the study, 72 of the diabetic women and 511 of the
non diabetic women had died. The diabetic women were observed for a total of 1,862
person-years; the non diabetic women were observed for a total of 36,653 personyears.
Calculate the incidence rates of death for the diabetic and non-diabetic women.
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person year
20X1/4
20X1/2
20X1
35 person yr
If 10 students develop hepatitis=(10/35)X100
= 28.57 new infections /100 person years of
observation
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Person-Time example
219
Jan
1980
Jan
1989
------------------
Jan
1999
------------------x
220
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221
3. Specification of Numerator
Number of persons versus number of conditions.
222
Example: children may have more than one episode of
diarrhea in a one-year period. Hence, it is possible to
construct two types of incidence rates from this.
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4. Specification of Denominator
223
The denominator for incidence studies should
consist of a defined population that is at risk of
developing the disease under consideration.
It should not include those who have the
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5. Period of Observation
Incidence rates must be stated in terms of a
definite period of time.224
It can be any length of time. The time has to be
long enough to ensure stability of the
numerator.
Person-time denominator must be used for
2. Prevalence rate
225
226
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Types of prevalence
227
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Point prevalence
o It
228
refers to the prevalence
measured at a
particular point in time
changes constantly
o Thus, may not be useful for assessment of
Contd
229
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Period prevalence
230
of time
o It is the proportion of persons with a particular
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Contd
231
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Example-1
232 at risk of disease X,
A total of 100 people were
which has no life time immunity.
t1
t2
Example
233
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point prevalence
234
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235
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Prevalence increased by
237
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Prevalence decreased by
238
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240
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241
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QUIZ
242
A.
B.
C.
243
THANK YOU
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244
Chapter 6
Epidemiological Study Designs
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State
of Types of research
knowledge of the questions
problem
Study
design
-Who is affected?
-How do the affected people
behave?
-what do they know, believe,
think about the problem?
-What is the magnitude of the
problem?
-Qualitative(e.g.
FGD)
Or
Quantitative
(Descriptive)
Analytic
(observational)
-Having sufficient
knowledge about the
cause
-to develop & assess an
intervention that would
prevent, control, or solve
the problem
Intervention
(experimental)
246
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Classification
247
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Classification of Epidemiologic
study designs
248
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249
Descriptive Epidemiology
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Learning objectives
250
analytical studies
o Describe the purpose of descriptive studies
o List type of descriptive studies
o State strength and limitation of descriptive studies
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Descriptive studies
251
distribution of disease
Descriptive study is one of the basic types of
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Contd
252
Characterization
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Contd
253
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Time
254
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Place
255
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Person
256
socioeconomic status
Age and sex are included in almost all data sets
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Contd
o Personal
257
characteristics
may affect illness,
organization and analysis of data by person
may use:
o
o
o
o
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1.
Case report
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260
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2. Case series
261
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D i s a d v a n t a g e s o f c a s e re p o r t s a n d
series
o Unable to test for 263statistical association
between exposure and outcome variables
o It is difficult to test for hypothesis because
there is no relevant comparison group
o Fundamental limitation of case report is
presence of a risk factor that is simply
chance
o Rates can not be calculated since the
population corresponding to the source of
cases can not be well defined
o Studies are prone to atomistic fallacy
(cannot be inferred to the population)
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3. Ecological studies
264
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Strength
can be done quickly and inexpensively, often
266
using already available information
LIMITATIONS
Because data are for groups, you cannot link disease and
exposure in individuals
You cannot control for potential confounders
Data represent average exposures rather than individual
exposures, so you cannot determine a dose-response
relationship
Caution must be taken to avoid drawing inappropriate
conclusions, or ecological fallacy
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Contd
269
o The
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271
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272
Analytical Epidemiology
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273
studies
o List different types of analytical studies
o Discus the advantages and disadvantages of
each analytic study types
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Definition
274
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275
Application:
To search for cause - effect relationship and
mechanism
o
o
Why?
How?
outcome of interest
o
Measures of association
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276
Basic features:
Key feature of analytic epidemiology is comparison
group
Appropriate comparison group needed:
o
o
o
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Observational studies
Interventional studies
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Observational studies
279
event
o An investigator measures but does not intervene
Interventional studies
o An investigator assigns study subjects to exposed
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282
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283
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284
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Exposure to risk
factors
With
(Case)
outcome
Without
outcome
(Control)
Retrospective in
nature
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Case-control studies
286
Direction of inquiry
Exposed
Cases
Non-exposed
Population
Exposed
Controls
Nonexposed
Time
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287
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288
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290
disease
E.g. HIV status, malaria caseness
A behavior
E.g. Alcohol drinking habit, cigarette smoking
Occurrence of an event
E.g. migration
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292
2-Population (community)
expensive
avoids selection bias
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Sources of controls
294
1-Hospital controls
Advantage:
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Disadvantages
295
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Advantages:
Generalization is possible
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Disadvantages
297
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Step 5: Analysis
299
significant association
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Case-control studies
300
Advantages:
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Limitations
301
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302
B) Cohort studies
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Definition
303
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Diseased
Exposed
Population
at risk
People
without
the
outcome
Not diseased
Diseased
Not Exposed
Not diseased
Time
Direction of enquiry
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Contd
306
Follow up study
Incidence study
Longitudinal study
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entry
o Selected by exposure status rather than outcome
status
o Follow up is needed to determine the incidence of
the outcome
o Compares incidence rates among exposed against
non-exposed groups
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309
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310
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yet occurred
Both groups are followed into the future in order
to observe the outcome of interest
is the commonest type (compared to the
retrospective cohort)
unless specified cohort study refers to the
prospective type of cohort
is regarded more reliable than the retrospective
cohort
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Selection of
Exposed & Unexposed
Participants
Follow - Up
2010
PROSPECTIVE
COHORT
STUDY
2005
Investigator
begins the
study
End of Follow
Up
2000
1990
End of Follow
Up
2005
RETROSPECTIVE
COHORT
STUDY
Investigator
begins the
study
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cohort study
313
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Contd
314
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315
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exposed group
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317
pre-existing records
conducting interview
routine surveillance
death certificate
periodic health examination
hospital records etc..
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318
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Step 6: Analyze
data
291
prepare 2X2 table
calculate Relative Risk (RR)
perform statistical tests to check whether
there is statistical significant association
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o Cross-sectional
survey
could
provide
321 frequency of health
information about the
conditions by providing a snapshot at a
specified time
o In this study, measure of association is
made using odds ratio (OR) i.e. Prevalence
ratio
o Prevalence
ratio of exposure among
diseased to non-diseased or prevalence
ratio of disease among exposed to nonexposed groups
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Case control
Cohort
Advantages:
323
valuable when exposure is rare
minimize
exposure
Limitations:
inefficient
inefficient
exposure
in
evaluation
of
establish
in
in
ascertainment
evaluation
of
of
rare
rare diseases
expensive
bias
time consuming
temporal loss to follow up creates problem
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323
324
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o An experimental design326
is a study design that gives
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327
2)
Always prospective
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a.
Therapeutic
(or
secondary
prevention) trials:
are conducted among patients with a particular
disease to determine the ability of an agent or
procedure to diminish symptoms, prevent
recurrence, or decrease risk of death from that
disease.
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Therapeutic Trial
330
New
Treatment
Sick
Individuals
Improved
outcome
No
improvement
Existing
Treatment
R=randomization
Improved
outcome
No
improvment
B=double blinding
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331
b.
Prevention Trial
332
With outcome
Vaccinated
Without
outcome
Healthy
Individuals
NotVaccinate
d
R=randomization
With outcome
Without
outcome
B=double blinding
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334
Direction of inquiry
Population
Patients
with a
disease
Recover
Treatment
Not recovering
Recover
Placebo
Manipulation
Not recovering
Time
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334
335
2. Field trial
Used
Health
promotion (preventive
interventions) are used as an exposure
Occurrence
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336
3. Community trial
Unit
Communities
as study subjects
Health
Occurrence
337
Direction of inquiry
Community
Population
Disease
Intervention
No disease
without
a disease
(cluster)
Disease
Non intervention
Manipulatio
n
No disease
Time
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337
B. Based on design
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1 . Phase I
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340
2. Phase II
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3. Phase III
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4. Phase IV
o.The purpose
Design:
no control group
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Steps in conducting
experimental studies
Step 1. Identify new 343
drug/intervention/prevention
Step 2. Identify comparison - e.g. standard
treatment or placebo
Step 3. Define eligible population/ exclusions
Step 4. Define the outcomes and how to assess
them
Step 5. Write the protocol
Step 6. Obtain research ethics committee approval
Step 7. Recruit and consent required sample of
patients or subjects
Step 8. Allocate individuals into:
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Advantages of randomization
346
favorable impression
results of a trial.
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347
outcome
The knowledge of participant's treatment status
might influence the identification or reporting of
relevant events. This can be overcome by the use of
placebo.
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348
Randomization
Blindness
Use
of placebo
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often used
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350
Contd
351
o Placebo
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352
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354
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355
Feasibility / practical issues
Cost
Experimental studies are very expensive
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356
The End!
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Chapter-7
357
MEASURES OF ASSOCIATION
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Learning objectives
358
expected to:
o List common measures of association and measures
of public health impact
o Calculate and interpret
relative risk
odds ratio
attributable and population attributable risk and
their percent
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Definition of association
359
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360
variables
o A causal association exists when the risk factor
causes change in the disease
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o Measuring an association
o Quantifies the strength361
of the relationship
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frequency
o
o
Relative comparison
Strength of relationship between exposure and outcome
disease frequency
o
o
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363
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364
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.
366
incidence
of a disease among exposed
RR
=
(a/(a+b))
incidence of a disease among non-exposed (c/
(c+d))
Disease
..
RR =
..
a+b
.
.
.
.
c
c +d
.
.
No (-)
a
c
b a+
b
d
c+
d
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366
K
n
o
w
n
Example
367
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368
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Interpretation
369
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Contd
372
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373
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Example
374
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375
Calculate OR
OR = ad
=
(23) (2816) = 1.6
bc
(304) (133)
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376
related to
disease
OR <1 then exposure NEGATIVELY related to
disease
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Interpretation
377
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Risk
378
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379
individuals?
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outcome.
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bacteruria:
AR=27/482 77/1908 = 0.01566 = 1566/105
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Contd
Thus, the excess occurrence
of bacteruria among
383
Contd
384
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Contd
385
AR=0 - no association
AR > 0 indicates positive association
386
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AR % =
AR % = 1566/100,000 X 100
27/482
= 27.96 %
Interpretation: If OC use causes bacteruria (UTI),
about 28 % of bacteruria among women who use OC
can be attributed to their OC use and can be
eliminated if they did not use oral contraceptives.
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calculated
It is, however, possible to389
calculate the AR% using the
following formula
AR% = (OR 1) x 100
OR
Example: From the data on OC use and MI, the OR of
390
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Estimates
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exposure
393
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Interpretation:
In a population of 100,000 smokers, 18 deaths
from lung cancer per year could have been
avoided by preventing them from smoking (this
refers to AR).
In a general population of 100,000 with a
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= I T - Io
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396
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397
population that is attributable
to the exposure and thus
could be eliminated if the exposure were eliminated.
PAR% is the percent of the incidence of a disease in the
population (exposed and non exposed) that is due to
exposure.
PAR % = PAR
X100
incidence rate in total population
Example:
PAR = 17.8 per 100,000 per year
Mortality rate in non-smokers = 7 per 100000
Mortality rate in the total population = 24.8 per 10 5 per
year
Calculate PAR %
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398
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Exercise
400
401
Thank you!!!
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