Increase in dNTP pool size during the DNA damage response plays a key role in spontaneous and induced-mutagenesis in Escherichia coli (Q35585702)

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16 January 2020

title

Increase in dNTP pool size during the DNA damage response plays a key role in spontaneous and induced-mutagenesis in Escherichia coli (English)

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16 January 2020

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1

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16 January 2020

author name string

Rita Napolitano

2

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16 January 2020

Walter Rocha

3

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16 January 2020

Stéphane Coulon

4

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16 January 2020

Robert P Fuchs

5

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16 January 2020

language of work or name

English

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publication date

14 November 2011

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Proceedings of the National Academy of Sciences of the United States of America

16 January 2020

published in

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16 January 2020

volume

108

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16 January 2020

issue

48

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16 January 2020

page(s)

19311-19316

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Mechanisms of mutagenesis in vivo due to imbalanced dNTP pools

16 January 2020

cites work

1 reference

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Rad8Rad5/Mms2-Ubc13 ubiquitin ligase complex controls translesion synthesis in fission yeast

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Biochemical basis for the essential genetic requirements of RecA and the beta-clamp in Pol V activation

12 July 2018

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The relationship between dNTP pool levels and mutagenesis in an Escherichia coli NDP kinase mutant

12 July 2018

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Identification of pathways controlling DNA damage induced mutation in Saccharomyces cerevisiae.

12 July 2018

1 reference

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Translesion synthesis in Escherichia coli: lessons from the NarI mutation hot spot

12 July 2018

1 reference

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Constitutively high dNTP concentration inhibits cell cycle progression and the DNA damage checkpoint in yeast Saccharomyces cerevisiae.

12 July 2018

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Role of DNA polymerase IV in Escherichia coli SOS mutator activity

12 July 2018

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12 July 2018

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12 July 2018

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A novel regulatory mechanism couples deoxyribonucleotide synthesis and DNA replication in Escherichia coli.

12 July 2018

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Regulation of mammalian ribonucleotide reduction and dNTP pools after DNA damage and in resting cells

12 July 2018

1 reference

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Properties and functions of Escherichia coli: Pol IV and Pol V.

12 July 2018

1 reference

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Defining the position of the switches between replicative and bypass DNA polymerases

12 July 2018

1 reference

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Mutant R1 proteins from Escherichia coli class Ia ribonucleotide reductase with altered responses to dATP inhibition

12 July 2018

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Escherichia coli strains (ndk) lacking nucleoside diphosphate kinase are powerful mutators for base substitutions and frameshifts in mismatch-repair-deficient strains

12 July 2018

1 reference

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Escherichia coli DNA polymerase III can replicate efficiently past a T-T cis-syn cyclobutane dimer if DNA polymerase V and the 3' to 5' exonuclease proofreading function encoded by dnaQ are inactivated

12 July 2018

1 reference

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Mechanism of DNA polymerase II-mediated frameshift mutagenesis

12 July 2018

1 reference

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Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Expression analysis of the nrdHIEF operon from Escherichia coli. Conditions that trigger the transcript level in vivo

12 July 2018

1 reference

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All three SOS-inducible DNA polymerases (Pol II, Pol IV and Pol V) are involved in induced mutagenesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

12 July 2018

1 reference

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Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Sequence-dependent modulation of frameshift mutagenesis at NarI-derived mutation hot spots

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Inactivation of DNA proofreading obviates the need for SOS induction in frameshift mutagenesis

12 July 2018

1 reference

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Genetic requirements and mutational specificity of the Escherichia coli SOS mutator activity

12 July 2018

1 reference

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Allosteric regulation of the third ribonucleotide reductase (NrdEF enzyme) from enterobacteriaceae

12 July 2018

1 reference

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Analysis of recA mutants with altered SOS functions.

12 July 2018

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International Commission for Protection Against Environmental Mutagens and Carcinogens. Deoxyribonucleoside triphosphate levels: a critical factor in the maintenance of genetic stability

12 July 2018

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The gene for nucleoside diphosphate kinase functions as a mutator gene in Escherichia coli.

12 July 2018

1 reference

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Involvement of the activated form of RecA protein in SOS mutagenesis and stable DNA replication in Escherichia coli

12 July 2018

1 reference

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Characterization of the mRNA coding for ribonucleoside diphosphate reductase in Escherichia coli

12 July 2018

1 reference

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The two-step model of bacterial UV mutagenesis.

12 July 2018

1 reference

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Plaque color method for rapid isolation of novel recA mutants of Escherichia coli K-12: new classes of protease-constitutive recA mutants

12 July 2018

1 reference

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Single adduct mutagenesis: strong effect of the position of a single acetylaminofluorene adduct within a mutation hot spot

12 July 2018

1 reference

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Two genes differentially regulated in the cell cycle and by DNA-damaging agents encode alternative regulatory subunits of ribonucleotide reductase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Measurement of in vivo expression of nrdA and nrdB genes of Escherichia coli by using lacZ gene fusions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Carcinogen-induced frameshift mutagenesis in repetitive sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Escherichia coli ribonucleotide reductase expression is cell cycle regulated

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Mechanism of ultraviolet-induced mutagenesis: Extent and fidelity of in vitro DNA synthesis on irradiated templates

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Essential role of Tip60-dependent recruitment of ribonucleotide reductase at DNA damage sites in DNA repair during G1 phase

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Evidence for lesion bypass by yeast replicative DNA polymerases during DNA damage.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Interplay among replicative and specialized DNA polymerases determines failure or success of translesion synthesis pathways.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

p53 directs focused genomic responses in Drosophila

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Stimulation of mutagenesis by proportional deoxyribonucleoside triphosphate accumulation in Escherichia coli

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

The biochemical requirements of DNA polymerase V-mediated translesion synthesis revisited

26 September 2018

1 reference

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Survival of DNA damage in yeast directly depends on increased dNTP levels allowed by relaxed feedback inhibition of ribonucleotide reductase

26 September 2018

1 reference

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Pivotal role of the beta-clamp in translesion DNA synthesis and mutagenesis in E. coli cells.

26 September 2018

1 reference

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Genetics of mutagenesis in E. coli: various combinations of translesion polymerases (Pol II, IV and V) deal with lesion/sequence context diversity

26 September 2018

1 reference

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Ribonucleoside diphosphate reductase is a component of the replication hyperstructure in Escherichia coli.

26 September 2018

1 reference

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Hyper-processive and slower DNA chain elongation catalysed by DNA polymerase III holoenzyme purified from the dnaE173 mutator mutant of Escherichia coli

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

Allosteric regulation of Trypanosoma brucei ribonucleotide reductase studied in vitro and in vivo

26 September 2018

1 reference

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Promoter identification and expression analysis of Salmonella typhimurium and Escherichia coli nrdEF operons encoding one of two class I ribonucleotide reductases present in both bacteria

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3228436

The base substitution and frameshift fidelity of Escherichia coli DNA polymerase III holoenzyme in vitro

26 September 2018

1 reference

12 December 2020

Mismatch extension by Escherichia coli DNA polymerase III holoenzyme

1 reference

12 December 2020

Pol III proofreading activity prevents lesion bypass as evidenced by its molecular signature within E.coli cells

1 reference

12 December 2020

RNR4 mutant alleles pso3-1 and rnr4Delta block induced mutation in Saccharomyces cerevisiae

1 reference

12 December 2020

SOS mutagenesis results from up-regulation of translesion synthesis

1 reference

12 December 2020

Constitutive expression of SOS functions and modulation of mutagenesis resulting from resolution of genetic instability at or near the recA locus of Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1113664108

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22084087%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22084087%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

PubMed publication ID

22084087

1 reference