Chapter 4. Structure, growth and production of a remarkably abundant vi population of the common ... more Chapter 4. Structure, growth and production of a remarkably abundant vi population of the common goby Pomatoschistus microps
As the effects of climate change continue to intensify, non-native species are becoming more prev... more As the effects of climate change continue to intensify, non-native species are becoming more prevalent in estuarine ecosystems. This has implications for the taxonomic and functional diversity of fish communities. Historically, biodiversity has been a synonym of taxonomic diversity, however this approach often fails to provide accurate insights on ecosystem functioning and resilience. To better understand how climate change is impacting fishes and their traits composition, a long-term dataset from Minho Estuary (NW Iberian Peninsula) fish assemblage was analyzed. The results suggest that climate change and extreme weather events are altering the prevailing trait modalities of fishes, which led to the overall decrease in functional diversity of the fish assemblage over the course of a decade. This decrease is associated to the loss of some trait modalities that are exclusively found in native species. On the other hand, the invasive species added novel traits associated to the condit...
Background Animal migrations are periodic and relatively predictable events, and their precise ti... more Background Animal migrations are periodic and relatively predictable events, and their precise timing is essential to the reproductive success. Despite large scientific effort in monitoring animal reproductive phenology, identification of complex environmental cues that determine the timing of reproductive migrations and temporal changes in the size of reproductive aggregations in relation to environmental variables is relatively rare in the current scientific literature. Methods We tagged and tracked 1702 individuals of asp (Leuciscus aspius), a large minnow species, and monitored with a resolution of one hour the size of their reproductive aggregations (counts of sexes present at the breeding grounds standardized by the sum of individuals in the season) over seven breeding seasons using passive integrated transponder tag systems. We examined the size of reproductive aggregations in relation to environmental cues of day number within a reproductive season (intra-year seasonality), ...
Freshwater protected areas are designated parts of the inland waters that restrict human activiti... more Freshwater protected areas are designated parts of the inland waters that restrict human activities. They were created as a mechanism to combat the decline of fauna and flora of the world. Some authors have questioned their actual effectiveness in terms of the purpose of protecting endangered fauna and flora. We conducted an experiment in Lipno reservoir in the Czech Republic to evaluate the impact of protection against angling pressure on the fish community. We selected data from two years of gill netting and analyzed the difference between areas of low anthropogenic impact (LAI) and those of high anthropogenic impact (HAI) in terms of abundance, biomass, standard length, and diversity indices. Three groups of fish were found to prefer protected areas with low anthropogenic pressure: 1. YOY (Young-of-the-year) perch (Perca fluviatilis), the dominant of the young-of-the-year fish community. 2. Pike (Esox lucius), wels catfish (Silurus glanis) and rudd (Scardinius erythrophthalmus), ...
Anthropogenic activities continue to pose the greatest challenges to freshwater ecosystems. There... more Anthropogenic activities continue to pose the greatest challenges to freshwater ecosystems. Therefore, long-term monitoring is essential for the management and conservation of these resources. Monitoring programs for freshwater bodies often use a range of indicators, including biological elements such as fish. Existing European standard provides a depth-stratified gillnet sampling approach mainly in benthic habitats and at the deepest part of lakes to account for the uneven distribution of fish. However, the commonly used CEN (European Committee for Standardization) protocol does not weight sufficiently habitat volumes and underrepresent pelagic habitats to calculate whole-lake catch and biomass per unit effort (CPUE and BPUE, respectively). Extended European standard gillnet (4 larger mesh-sizes added in the geometric series) catch data collected over 18 years (2004–2021) in Římov Reservoir (Czech Republic) were used for a method comparison on indices for relative abundance and bio...
The impact of Sacculina carcini infection on the nutritional status of the shore crab Carcinus ma... more The impact of Sacculina carcini infection on the nutritional status of the shore crab Carcinus maenas was investigated in the western Dutch Wadden Sea for a period of 20 months. About 3.3% of the population was sacculinized, i.e. externally infected with S. carcini and only 0.7% presented scars of previous infection. The results of mixed linear models showed that sacculinized and non-sacculinized crabs had similar morphometric condition, while the energy density of parasitized crabs (externa excluded) was significantly reduced by about 4.3% overall, and by up to 5.8% in crabs under 40 mm carapace width. However, when Sacculina externa was included in the energy determinations, the difference in energy density decreased to 1.2%, while total energy content of the pair infected crab-parasite including externa was 30.8% higher than non-sacculinized crabs of similar size. The total energy content of ovigerous females (eggs included) was even higher, near doubling the energy of similar-si...
To understand the spatiotemporal overlap in the habitat use of sympatric predators, we studied lo... more To understand the spatiotemporal overlap in the habitat use of sympatric predators, we studied longitudinal activity and reservoir section and depth use of pike (Esox lucius), pikeperch (Sander lucioperca) and catfish (Silurus glanis) in the Římov Reservoir, using an autonomous telemetry system for 11 months. We found significant differences among these species in studied parameters that varied considerably over tracked period. Pike consistently used the same sections of the reservoir, while pikeperch and catfish frequently visited a tributary during the warm season (late spring and early autumn), and moved closer to the dam during the cold season (late autumn to early spring). Pike longitudinal activity was highest in the cold season, pikeperch in the warm season, and catfish activity peaked in both seasons. Overlap in the depth use among species was higher in the warm season, when all species used the upper layer of the water column, and lower in the cold season, when pikeperch and catfish used deeper areas. These results demonstrated overlay and temporal variation of habitat use among these predators, as well as potential spatiotemporal space for their direct ecological interactions.
It is difficult to understand the composition and diversity of biological communities in complex ... more It is difficult to understand the composition and diversity of biological communities in complex and heterogeneous environments using traditional sampling methods. Recently, developments in environmental DNA metabarcoding have emerged as a powerful, non-invasive method for comprehensive community characterization and biodiversity monitoring in different types of aquatic ecosystems. In this study, water eDNA targeting fish (wf-eDNA) and four traditional fish sampling methods (electrofishing, gill netting, seining, trawling) were compared to evaluate the reliability and efficiency of wf-eDNA (vertebrate mitochondrial 12S ribosomal RNA (rRNA) as an alternative approach to assess the diversity and composition of freshwater fish communities. The results of wf-eDNA showed a consistency between the traditional sampling methods regarding species detection. However, some fish species detected using wf-eDNA assay were not detected using traditional sampling methods and vice versa. Comparison ...
Many endangered fish species in the wild are artificially bred, and their populations are strengt... more Many endangered fish species in the wild are artificially bred, and their populations are strengthened by the stocking of aquaculture-raised juveniles. Because fish from aquaculture are generally not well prepared for the challenging life in the wild, we tested whether training for selected challenges could improve fish survival after stocking. We chose conditioning on predation pressure (by learning predator image of northern pike Esox lucius using predator chemical cues and visual stimuli), increased rearing water velocity 20 cm × s−1, and direct exposure to predation. The juvenile cyprinid fish asp (Leuciscus aspius) was used as a model prey species. A total of 7949 asp were reared in four groups using a combination of high flow, predation, and control treatments (low flow, no predation; 2018, 2149, 1929, and 1856 individuals, respectively). Of these, 1800 individuals were released into three ponds with pike, and their mortality rates were monitored in relation to predation for t...
Inter-population variability may arise as a response to adverse natural and anthropogenic stresso... more Inter-population variability may arise as a response to adverse natural and anthropogenic stressors. The dynamics of a key amphipod species (Echinogammarus marinus) was followed during ≈ 1-year at its southerly range (NW Portugal), in three estuaries with different levels of anthropogenic pressure (High - Ave estuary; Moderate - Mondego estuary; Low - Minho estuary). We hypothesised that E. marinus populations would present lower production and fitness, and higher intersexuality incidence with increasing anthropogenic pressure. According to a GAM model explaining ≈70% of the observed variability, E. marinus biomass depends on temperature, organic matter, Fucus area and time of the year. Significant differences were found between the gammarid biomass in Minho and Mondego estuaries and within sites from the same estuary. As expected, Ave estuary exhibited the lowest average annual production, abundance and fecundity rates. However, the highest average production was found in Mondego and not in Minho estuary, although the turnover ratio (P/B) of both estuaries was very similar. Besides the system's global ecological status, E. marinus also seems to respond to microhabitat conditions, which may explain the spatial heterogeneity observed in the amphipod production within the same estuary. Intersexuality prevalence was negligible in the three populations, which does not support the idea of a link between anthropogenic pressure and intersexuality in E. marinus. We argue that the dependence of E. marinus on Fucus sp. should be further investigated to fully understand the role of both fucoids and the gammarid in coastal foodwebs.
Chapter 4. Structure, growth and production of a remarkably abundant vi population of the common ... more Chapter 4. Structure, growth and production of a remarkably abundant vi population of the common goby Pomatoschistus microps
As the effects of climate change continue to intensify, non-native species are becoming more prev... more As the effects of climate change continue to intensify, non-native species are becoming more prevalent in estuarine ecosystems. This has implications for the taxonomic and functional diversity of fish communities. Historically, biodiversity has been a synonym of taxonomic diversity, however this approach often fails to provide accurate insights on ecosystem functioning and resilience. To better understand how climate change is impacting fishes and their traits composition, a long-term dataset from Minho Estuary (NW Iberian Peninsula) fish assemblage was analyzed. The results suggest that climate change and extreme weather events are altering the prevailing trait modalities of fishes, which led to the overall decrease in functional diversity of the fish assemblage over the course of a decade. This decrease is associated to the loss of some trait modalities that are exclusively found in native species. On the other hand, the invasive species added novel traits associated to the condit...
Background Animal migrations are periodic and relatively predictable events, and their precise ti... more Background Animal migrations are periodic and relatively predictable events, and their precise timing is essential to the reproductive success. Despite large scientific effort in monitoring animal reproductive phenology, identification of complex environmental cues that determine the timing of reproductive migrations and temporal changes in the size of reproductive aggregations in relation to environmental variables is relatively rare in the current scientific literature. Methods We tagged and tracked 1702 individuals of asp (Leuciscus aspius), a large minnow species, and monitored with a resolution of one hour the size of their reproductive aggregations (counts of sexes present at the breeding grounds standardized by the sum of individuals in the season) over seven breeding seasons using passive integrated transponder tag systems. We examined the size of reproductive aggregations in relation to environmental cues of day number within a reproductive season (intra-year seasonality), ...
Freshwater protected areas are designated parts of the inland waters that restrict human activiti... more Freshwater protected areas are designated parts of the inland waters that restrict human activities. They were created as a mechanism to combat the decline of fauna and flora of the world. Some authors have questioned their actual effectiveness in terms of the purpose of protecting endangered fauna and flora. We conducted an experiment in Lipno reservoir in the Czech Republic to evaluate the impact of protection against angling pressure on the fish community. We selected data from two years of gill netting and analyzed the difference between areas of low anthropogenic impact (LAI) and those of high anthropogenic impact (HAI) in terms of abundance, biomass, standard length, and diversity indices. Three groups of fish were found to prefer protected areas with low anthropogenic pressure: 1. YOY (Young-of-the-year) perch (Perca fluviatilis), the dominant of the young-of-the-year fish community. 2. Pike (Esox lucius), wels catfish (Silurus glanis) and rudd (Scardinius erythrophthalmus), ...
Anthropogenic activities continue to pose the greatest challenges to freshwater ecosystems. There... more Anthropogenic activities continue to pose the greatest challenges to freshwater ecosystems. Therefore, long-term monitoring is essential for the management and conservation of these resources. Monitoring programs for freshwater bodies often use a range of indicators, including biological elements such as fish. Existing European standard provides a depth-stratified gillnet sampling approach mainly in benthic habitats and at the deepest part of lakes to account for the uneven distribution of fish. However, the commonly used CEN (European Committee for Standardization) protocol does not weight sufficiently habitat volumes and underrepresent pelagic habitats to calculate whole-lake catch and biomass per unit effort (CPUE and BPUE, respectively). Extended European standard gillnet (4 larger mesh-sizes added in the geometric series) catch data collected over 18 years (2004–2021) in Římov Reservoir (Czech Republic) were used for a method comparison on indices for relative abundance and bio...
The impact of Sacculina carcini infection on the nutritional status of the shore crab Carcinus ma... more The impact of Sacculina carcini infection on the nutritional status of the shore crab Carcinus maenas was investigated in the western Dutch Wadden Sea for a period of 20 months. About 3.3% of the population was sacculinized, i.e. externally infected with S. carcini and only 0.7% presented scars of previous infection. The results of mixed linear models showed that sacculinized and non-sacculinized crabs had similar morphometric condition, while the energy density of parasitized crabs (externa excluded) was significantly reduced by about 4.3% overall, and by up to 5.8% in crabs under 40 mm carapace width. However, when Sacculina externa was included in the energy determinations, the difference in energy density decreased to 1.2%, while total energy content of the pair infected crab-parasite including externa was 30.8% higher than non-sacculinized crabs of similar size. The total energy content of ovigerous females (eggs included) was even higher, near doubling the energy of similar-si...
To understand the spatiotemporal overlap in the habitat use of sympatric predators, we studied lo... more To understand the spatiotemporal overlap in the habitat use of sympatric predators, we studied longitudinal activity and reservoir section and depth use of pike (Esox lucius), pikeperch (Sander lucioperca) and catfish (Silurus glanis) in the Římov Reservoir, using an autonomous telemetry system for 11 months. We found significant differences among these species in studied parameters that varied considerably over tracked period. Pike consistently used the same sections of the reservoir, while pikeperch and catfish frequently visited a tributary during the warm season (late spring and early autumn), and moved closer to the dam during the cold season (late autumn to early spring). Pike longitudinal activity was highest in the cold season, pikeperch in the warm season, and catfish activity peaked in both seasons. Overlap in the depth use among species was higher in the warm season, when all species used the upper layer of the water column, and lower in the cold season, when pikeperch and catfish used deeper areas. These results demonstrated overlay and temporal variation of habitat use among these predators, as well as potential spatiotemporal space for their direct ecological interactions.
It is difficult to understand the composition and diversity of biological communities in complex ... more It is difficult to understand the composition and diversity of biological communities in complex and heterogeneous environments using traditional sampling methods. Recently, developments in environmental DNA metabarcoding have emerged as a powerful, non-invasive method for comprehensive community characterization and biodiversity monitoring in different types of aquatic ecosystems. In this study, water eDNA targeting fish (wf-eDNA) and four traditional fish sampling methods (electrofishing, gill netting, seining, trawling) were compared to evaluate the reliability and efficiency of wf-eDNA (vertebrate mitochondrial 12S ribosomal RNA (rRNA) as an alternative approach to assess the diversity and composition of freshwater fish communities. The results of wf-eDNA showed a consistency between the traditional sampling methods regarding species detection. However, some fish species detected using wf-eDNA assay were not detected using traditional sampling methods and vice versa. Comparison ...
Many endangered fish species in the wild are artificially bred, and their populations are strengt... more Many endangered fish species in the wild are artificially bred, and their populations are strengthened by the stocking of aquaculture-raised juveniles. Because fish from aquaculture are generally not well prepared for the challenging life in the wild, we tested whether training for selected challenges could improve fish survival after stocking. We chose conditioning on predation pressure (by learning predator image of northern pike Esox lucius using predator chemical cues and visual stimuli), increased rearing water velocity 20 cm × s−1, and direct exposure to predation. The juvenile cyprinid fish asp (Leuciscus aspius) was used as a model prey species. A total of 7949 asp were reared in four groups using a combination of high flow, predation, and control treatments (low flow, no predation; 2018, 2149, 1929, and 1856 individuals, respectively). Of these, 1800 individuals were released into three ponds with pike, and their mortality rates were monitored in relation to predation for t...
Inter-population variability may arise as a response to adverse natural and anthropogenic stresso... more Inter-population variability may arise as a response to adverse natural and anthropogenic stressors. The dynamics of a key amphipod species (Echinogammarus marinus) was followed during ≈ 1-year at its southerly range (NW Portugal), in three estuaries with different levels of anthropogenic pressure (High - Ave estuary; Moderate - Mondego estuary; Low - Minho estuary). We hypothesised that E. marinus populations would present lower production and fitness, and higher intersexuality incidence with increasing anthropogenic pressure. According to a GAM model explaining ≈70% of the observed variability, E. marinus biomass depends on temperature, organic matter, Fucus area and time of the year. Significant differences were found between the gammarid biomass in Minho and Mondego estuaries and within sites from the same estuary. As expected, Ave estuary exhibited the lowest average annual production, abundance and fecundity rates. However, the highest average production was found in Mondego and not in Minho estuary, although the turnover ratio (P/B) of both estuaries was very similar. Besides the system's global ecological status, E. marinus also seems to respond to microhabitat conditions, which may explain the spatial heterogeneity observed in the amphipod production within the same estuary. Intersexuality prevalence was negligible in the three populations, which does not support the idea of a link between anthropogenic pressure and intersexuality in E. marinus. We argue that the dependence of E. marinus on Fucus sp. should be further investigated to fully understand the role of both fucoids and the gammarid in coastal foodwebs.
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