Haplotypes of OLR1 gene and their frequencies in Qinchuan cattle 1) Haplotype G10563T T10588C C10647T Frequency (%) Hap1 G1 C2 C3 15.70 Hap2 G1 C2 T3 5.90
Hap3 G1 T2 C3 42.10 Hap4 G1 T2 T3 17.60 Hap5 T1 T2 C3 9.80 OLR1, oxidized low density lipoprotein receptor 1.
Three haplotypes were identified in China: Hap1 (dark red), Hap2 (orange), and
Hap3 (dark yellow).
The number of haplotypes in different generations for the Langshan conservation population Generation Haplotype 0 5 10 15 16 17 Hap1 2 1 -- -- -- -- Hap2 23 22 31 30 28 30
Hap3 1 3 -- -- -- -- Hap4 1 1 1 1 3 2 Hap5 -- -- 1 4 4 1 Table 4.
SLA-DRA gene haplotype and its association with piglet diarrhea Name Haplotypes Frequency (%) Diarrhea piglets Number Frequency (%) Hap1 ATACTAAAGG 8.63 4 4.17 Hap2 ATACTGAAGG 4.27 7 7.29
Hap3 ATCCTGAAGG 2.60 1 1.04 Hap4 GTACTAAAGG 8.89 3 3.13 Hap5 GTACTGAAGG 4.13 8 8.33 Hap6 GTACCAAGGA 2.08 4 4.17 Hap7 GTCCTAAAGG 9.67 4 4.17 Hap8 GTCCTGAAGG 8.13 13 13.54 Hap9 GTCCCAAGGA 2.64 0 0 Hap10 GTCTTAAAGG 6.25 10 10.42 Hap11 GTCTCAAGGA 3.28 3 3.12 Hap12 GTCTCGGAGG 2.64 3 3.12 Hap13 GCACTGAAGG 6.64 5 5.21 Hap14 GCCCTAAAGG 6.54 8 8.33 Others 23.61 23 23.96 SLA, swine leukocyte antigen.
Hap1, Hap2, and
Hap3 were found in the populations from Shandong (97.7%), Beijing (100.0%), Yunnan (100.0%), and California (80.0%).
Haplotypes and their frequencies of the five SNPs Haplotype SNPs Frequency Hap1 AGCTG 0.5026 Hap2 CCTCC 0.4634
Hap3 AGCCG 0.0196 Hap4 CGCCG 0.0092 Hap5 CGTTG 0.0039 Hap6 CCTCG 0.0013 Table 6.