FastQCFastQC Report
Fri 31 May 2024
EGAF00002300529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9113418
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC55

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACAC364940.40044251234827594No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCA300260.3294702382794249No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT256750.281727448472132No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACAC190520.20905438552253391No Hit
ACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCC181500.19915689151973498No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACAC177790.19508597103743075No Hit
CACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC175900.1930121058860682No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACCACGACACCCATCA171950.1886778374480354No Hit
CCAACACCCACCGGCACACAGACCCCAACATCGACACCCATCACCACCAC161560.17727706553128586No Hit
CCCATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCAC160580.17620172804539416No Hit
CACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCC137980.15140312888095334No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGGATT127180.13955247087316744No Hit
ACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCACACAGACCCC119860.1315203582234459No Hit
GTACAACCCTGACACCCATCACCACCACCACCACGGTGACACCAACCCCA119100.13068642303030542No Hit
GGTGACCCCAACCCCAACACCCACCGGCACACAGACCCCAACCCCGACAC117180.12857963938447683No Hit
CATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACAC117030.12841504691214647No Hit
GCCATCACCACCACCACTACGGTGACCCCAACCCCAACACCCACCGGCAC114110.1252109801174488No Hit
ACGACACCCATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCAC109770.12044877125135707No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA107320.11776042753662787No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT103430.1134919960875272No Hit
ATCAGCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACA103330.11338226777264031No Hit
CCCAACCCCAACACCCACCGGCACACAGACCCCAACAACGACACCCATCA102270.11221914763483909No Hit
ATCACCACCACCACCACGGTGACCCCAACCCCAACACCCACCGGCACACA101070.11090240785619622No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCG93010.10205830567631158No Hit
CACAGACCCCAACATCGACACCCATCACCACCACCACTACGGTGACCCCA91540.10044529944747405No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)