FastQCFastQC Report
Fri 10 May 2024
EGAF00005744138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55096046
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length25-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGA1001160.18171176929829047No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA961270.17447168531839835No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT718610.13042859736250403No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC614100.1114599040373968No Hit
CTTCCATATATACATTCCTTGGAAAGCTGAACAAAATGAGTGAAAACTCT608480.11043986713674515No Hit
CCTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTT596870.10833263788112851No Hit
CGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGAT596800.10831993279517736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)