FastQCFastQC Report
Sun 12 May 2024
EGAF00005744147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005744147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64181353
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length48-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1095480.17068508979547375No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC885370.13794816696992973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)