Latest version, with options for graphical output and ppc protein prediction.
Web service: https://asafind.jcu.cz/
Local installation steps:
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step into the directory where you want to make the installation e.g. cd /home/marta/asafind
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make the installation directory here eg. mkdir asafind_line_command
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step into this directory cd asafind_line_command
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download all files of this repository and copy them into the directory
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run the following four commands from the command line:
python3 -m venv asafind_line_command
. asafind_line_command/bin/activate
pip install --upgrade pip
pip install -r requirements.txt
This will create an environment called asafind_command_line including subdirectries temp and output, and install all required packages to activate it.