Skip to content

Added Suffix Tree Implementation in C++ #261

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Oct 30, 2019
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
87 changes: 87 additions & 0 deletions Trees/Suffix Tree
Original file line number Diff line number Diff line change
@@ -0,0 +1,87 @@
string s;
int n;

struct node {
int l, r, par, link;
map<char,int> next;

node (int l=0, int r=0, int par=-1)
: l(l), r(r), par(par), link(-1) {}
int len() { return r - l; }
int &get (char c) {
if (!next.count(c)) next[c] = -1;
return next[c];
}
};
node t[MAXN];
int sz;

struct state {
int v, pos;
state (int v, int pos) : v(v), pos(pos) {}
};
state ptr (0, 0);

state go (state st, int l, int r) {
while (l < r)
if (st.pos == t[st.v].len()) {
st = state (t[st.v].get( s[l] ), 0);
if (st.v == -1) return st;
}
else {
if (s[ t[st.v].l + st.pos ] != s[l])
return state (-1, -1);
if (r-l < t[st.v].len() - st.pos)
return state (st.v, st.pos + r-l);
l += t[st.v].len() - st.pos;
st.pos = t[st.v].len();
}
return st;
}

int split (state st) {
if (st.pos == t[st.v].len())
return st.v;
if (st.pos == 0)
return t[st.v].par;
node v = t[st.v];
int id = sz++;
t[id] = node (v.l, v.l+st.pos, v.par);
t[v.par].get( s[v.l] ) = id;
t[id].get( s[v.l+st.pos] ) = st.v;
t[st.v].par = id;
t[st.v].l += st.pos;
return id;
}

int get_link (int v) {
if (t[v].link != -1) return t[v].link;
if (t[v].par == -1) return 0;
int to = get_link (t[v].par);
return t[v].link = split (go (state(to,t[to].len()), t[v].l + (t[v].par==0), t[v].r));
}

void tree_extend (int pos) {
for(;;) {
state nptr = go (ptr, pos, pos+1);
if (nptr.v != -1) {
ptr = nptr;
return;
}

int mid = split (ptr);
int leaf = sz++;
t[leaf] = node (pos, n, mid);
t[mid].get( s[pos] ) = leaf;

ptr.v = get_link (mid);
ptr.pos = t[ptr.v].len();
if (!mid) break;
}
}

void build_tree() {
sz = 1;
for (int i=0; i<n; ++i)
tree_extend (i);
}