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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

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  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 122 34

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 116 12

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 114 11

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 102 25

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 75 30

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 52 6

Repositories

Showing 10 of 71 repositories
  • elephant-in-the-room Public

    Companion repository to our Lause, Berens & Kobak (2024) paper "The art of seeing the elephant in the room: 2D embeddings of single-cell data do make sense" (PLOS Computational Biology)

    berenslab/elephant-in-the-room’s past year of commit activity
    Jupyter Notebook 6 GPL-3.0 0 0 0 Updated Feb 13, 2025
  • llm-excess-vocab Public

    Delving into ChatGPT usage in academic writing through excess vocabulary

    berenslab/llm-excess-vocab’s past year of commit activity
    Jupyter Notebook 33 MIT 5 1 0 Updated Feb 12, 2025
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    berenslab/retinal-rl’s past year of commit activity
    Python 0 AGPL-3.0 1 23 3 Updated Feb 12, 2025
  • fundus_image_toolbox Public

    A Python package for fundus image processing.

    berenslab/fundus_image_toolbox’s past year of commit activity
    Jupyter Notebook 7 MIT 1 0 0 Updated Feb 11, 2025
  • contrastive-ne Public

    Contrastive neighbor embeddings

    berenslab/contrastive-ne’s past year of commit activity
    Jupyter Notebook 52 MIT 6 1 0 Updated Feb 7, 2025
  • iclr-dataset Public

    ICLR dataset

    berenslab/iclr-dataset’s past year of commit activity
    Jupyter Notebook 20 5 1 0 Updated Feb 7, 2025
  • eff-ph Public

    Persistent homology for high-dimensional data based on spectral methods

    berenslab/eff-ph’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Jan 18, 2025
  • t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    berenslab/t-simcne’s past year of commit activity
    Python 116 12 1 1 Updated Jan 10, 2025
  • patch-seq-rrr Public

    Sparse reduced-rank regression

    berenslab/patch-seq-rrr’s past year of commit activity
    Jupyter Notebook 20 5 1 0 Updated Jan 8, 2025
  • retimgtools Public

    Web-based tools for retinal image annotation and evaluation.

    berenslab/retimgtools’s past year of commit activity
    Python 1 0 0 0 Updated Dec 13, 2024
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