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@berenslab

Berens Lab @ University of Tübingen

Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen

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  1. rna-seq-tsne rna-seq-tsne Public

    The art of using t-SNE for single-cell transcriptomics

    Jupyter Notebook 121 34

  2. t-simcne t-simcne Public

    Unsupervised visualization of image datasets using contrastive learning

    Python 116 12

  3. pubmed-landscape pubmed-landscape Public

    The landscape of biomedical research

    Jupyter Notebook 113 11

  4. neural_data_science neural_data_science Public

    Contains programming labs and lecture notes for the lecture "Neural Data Science"

    Jupyter Notebook 98 23

  5. uneye uneye Public

    Deep neural network for eye movement detection

    Jupyter Notebook 74 30

  6. contrastive-ne contrastive-ne Public

    Contrastive neighbor embeddings

    Jupyter Notebook 52 6

Repositories

Showing 10 of 71 repositories
  • retinal-rl Public

    Testing theories about retinal coding in reinforcement learning environments

    berenslab/retinal-rl’s past year of commit activity
    Python 0 AGPL-3.0 1 20 1 Updated Nov 27, 2024
  • fundus_image_toolbox Public

    A Python package for fundus image processing.

    berenslab/fundus_image_toolbox’s past year of commit activity
    Jupyter Notebook 5 MIT 1 0 0 Updated Nov 25, 2024
  • retimgtools Public

    Web-based tools for retinal image annotation and evaluation.

    berenslab/retimgtools’s past year of commit activity
    Python 1 0 0 0 Updated Nov 22, 2024
  • hh_sbi Public
    berenslab/hh_sbi’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Nov 19, 2024
  • dependence-measures-medical-imaging Public

    This repository contains the code for the paper "Benchmarking Dependence Measures to Prevent Shortcut Learning in Medical Imaging".

    berenslab/dependence-measures-medical-imaging’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 4, 2024
  • iclr-dataset Public

    ICLR dataset

    berenslab/iclr-dataset’s past year of commit activity
    Jupyter Notebook 17 3 1 0 Updated Oct 31, 2024
  • interpretable-deep-survival-analysis Public

    An interpretable end-to-end CNN for disease progression modeling that predicts late AMD onset (MICCAI 2024)

    berenslab/interpretable-deep-survival-analysis’s past year of commit activity
    Python 1 0 0 0 Updated Oct 29, 2024
  • disentangling-retinal-images Public

    This repository contains the code for the paper "Disentangling representations of retinal images with generative models".

    berenslab/disentangling-retinal-images’s past year of commit activity
    Python 0 0 0 0 Updated Sep 19, 2024
  • RFEst Public

    A Python 3 toolbox for neural receptive field estimation using splines and Gaussian priors.

    berenslab/RFEst’s past year of commit activity
    Python 24 GPL-3.0 3 4 (1 issue needs help) 0 Updated Aug 20, 2024
  • medical-t-simcne Public

    This repository contains the codes to train a t-SimCNE model. This model has been shown to produce good representations on natural and medical images.

    berenslab/medical-t-simcne’s past year of commit activity
    Python 2 1 0 0 Updated Aug 12, 2024
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