After #124, we now automatically append the `path` with the `repo` name, so the example should be changed to pass only the base directory as the `path` input.

…` module

After coder/modules#124, the `git-clone` module automatically appends and creates the path with the repo name, so we need to change the `path` input to specify the `repo_base_dir`. 

The `repo_dir` must still be passed to `code-server` and `jetbrains-gateway` modules and to set the `dir` field of `coder_agent`