1 Release published by 1 person

• v2.5.0 VEBA_v2.5.0

  published Apr 10, 2025

6 Pull requests merged by 1 person

• Merge pull request #164 from jolespin/main

  #166 merged Apr 10, 2025

• consolidate main/dev

  #164 merged Apr 10, 2025

• updated database.md

  #165 merged Apr 10, 2025

• v2.5.0

  #163 merged Apr 10, 2025

• Added executable check in binning-prokaryotic.py

  #162 merged Apr 9, 2025

• Dev v2.5.0

  #161 merged Apr 9, 2025

12 Issues closed by 1 person

• [Feature Request] Add genome_statistics.tsv, gene_statistics.*.tsv to veba essentials

  #156 closed Apr 10, 2025

• [Feature Request] Use megahit_core contig2fastg to build fastg before gfa

  #158 closed Apr 9, 2025

• [Question] From Metabat2 to Metaeuk and Busco?

  #128 closed Apr 9, 2025

• [Feature Request] Update antiSMASH to version 7

  #159 closed Apr 9, 2025

• [Bug] When interrupting prokaryotic binning and restarting, contigs can be assigned to more than one bin

  #140 closed Apr 9, 2025

• [Feature Request] Add clusterblast to biosynthetic.py

  #143 closed Apr 9, 2025

• [Feature Request] Update BUSCO to just released odb12

  #149 closed Apr 9, 2025

• [Bug] `number_of_vfdb_hits` is actually `number_of_mibig_hits` in the homology.tsv.gz file from biosynthetic module

  #141 closed Apr 9, 2025

• [Bug] Tiara results are not used to filter out eukaryotes in v2.4.0 in binning-prokaryotic.py

  #153 closed Apr 9, 2025

• [Feature Request] Update CheckM2 version in binning-prokaryotic.py

  #154 closed Apr 9, 2025

• [Feature Request] Add support for using multiple SemiBin2 biomes

  #155 closed Apr 9, 2025

• [Feature Request] Update geNomad to version 1.11 and geNomad database v1.9

  #160 closed Apr 9, 2025

1 Issue opened by 1 person

• [Bug] Some modules in VEBA_v2.5.0 can only be installed on devices with CUDA

  #167 opened Apr 10, 2025