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Commits on May 4, 2023

• Update README.rst

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• Deprecate

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Commits on Mar 25, 2022

• Remora 1.0

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Commits on Dec 1, 2021

• Remora

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Commits on Apr 7, 2021

• Add note concerning install issues with pyguppy and python 3.9.

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Commits on Apr 1, 2021

• Update readme and docs with new guppy model info.

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Commits on Mar 8, 2021

• Convert to typed memoryviews in cython code to avoid numpy pre-install. Also update installation interface.

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Commits on Nov 9, 2020

• Fix link to pypi package.

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Commits on Oct 20, 2020

• Update README to give Rerio download instructions in the getting started section.

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Commits on Oct 12, 2020

• Add note to recommend GPU running for Megalodon.

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• Add link to company website to banner image.

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• Fix broken link in README and link pypi and badges to appropriate site.

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Commits on Sep 17, 2020

• Refactor read enumeration and signal extraction into fast5_io and add flag to profile signal extraction.

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Commits on Sep 9, 2020

• Update Guppy recommendations in README.

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Commits on Sep 8, 2020

• Update docs for read batching.

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Commits on Aug 20, 2020

• Update README.rst

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• Setup tags to render on the same line.

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• Remove tag alts to render correctly

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Commits on Aug 18, 2020

• Additional round of edits to the README for 2.2 release.

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Commits on Aug 13, 2020

• Updates to docs for 2.2 release.

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• Update README with version 2.2 features and relevant content.

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Commits on Jun 18, 2020

• Remove reference to --output-signal-mappings and sort configs for listing calibration support.

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• Add note to README on guppy 4.0 support.

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Commits on Jun 17, 2020

• Merge branch 'master' of https://github.com/nanoporetech/megalodon

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Commits on Jun 15, 2020

• Added docs for calibration extra commands and ran spell check on all doc files.

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Commits on Jun 5, 2020

• Add variant calibration files for all dna flip-flop models.

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Commits on Jun 1, 2020

• Change variant calling defaults and add related note to README.

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Commits on May 13, 2020

• Merge branch 'master' into mega_extras

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Commits on May 6, 2020

• Remove references to scripts directory.

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Commits on May 5, 2020

• Update readme with RNA branch merge.

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Commits on Apr 28, 2020

• Convert whatshap_mappings to variant_mappings as well as internal code annotations. In prep to add mod_mappings.

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Commits on Mar 19, 2020

• Fix note rendering in README

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• Order outputs in help menu and add section to README on atomized variants.

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Commits on Feb 27, 2020

• Finished edits to README.

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Commits on Feb 26, 2020

• Updates to README and added chrom to mapping summary output.

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