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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 406

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 130

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 300 166

Repositories

Showing 10 of 94 repositories
  • mumps Public

    Nextstrain build for mumps virus

    nextstrain/mumps’s past year of commit activity
    Python 2 5 7 2 Updated Apr 11, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 48 28 27 3 Updated Apr 10, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 130 216 (1 issue needs help) 33 Updated Apr 10, 2025
  • zika Public

    Nextstrain build for Zika virus

    nextstrain/zika’s past year of commit activity
    Python 8 10 4 3 Updated Apr 10, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 34 AGPL-3.0 13 19 10 Updated Apr 10, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Fork for maintaining Nextstrain-related recipes and submitting PRs upstream.

    nextstrain/bioconda-recipes’s past year of commit activity
    Shell 0 3,463 3 0 Updated Apr 10, 2025
  • nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    nextstrain/nextclade’s past year of commit activity
    Rust 229 MIT 60 110 (31 issues need help) 19 Updated Apr 10, 2025
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 46 MIT 20 27 5 Updated Apr 10, 2025
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 96 AGPL-3.0 50 71 13 Updated Apr 10, 2025
  • rubella Public
    nextstrain/rubella’s past year of commit activity
    Python 0 1 11 1 Updated Apr 9, 2025
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