nipy · effigies · Oct 6, 2024 · Oct 4, 2024
diff --git a/doc/users/plots/hrf_different.py b/doc/users/plots/hrf_different.py
@@ -16,8 +16,8 @@
 
 ta = [0,4,8,12,16]; tb = [2,6,10,14,18]
 ba = 1; bb = -2
-na = ba * sum([glover.subs(T, T - t) for t in ta])
-nb = bb * sum([afni.subs(T, T - t) for t in tb])
+na = ba * sum(glover.subs(T, T - t) for t in ta)
+nb = bb * sum(afni.subs(T, T - t) for t in tb)
 
 nav = lambdify_t(na)
 nbv = lambdify_t(nb)

diff --git a/doc/users/plots/neuronal_block.py b/doc/users/plots/neuronal_block.py
@@ -14,8 +14,8 @@
 
 ta = [0,4,8,12,16]; tb = [2,6,10,14,18]
 ba = Symbol('ba'); bb = Symbol('bb'); t = Symbol('t')
-fa = sum([Piecewise((0, (t<_t)), ((t-_t)/0.5, (t<_t+0.5)), (1, (t >= _t+0.5))) for _t in ta])*ba
-fb = sum([Piecewise((0, (t<_t)), ((t-_t)/0.5, (t<_t+0.5)), (1, (t >= _t+0.5))) for _t in tb])*bb
+fa = sum(Piecewise((0, (t<_t)), ((t-_t)/0.5, (t<_t+0.5)), (1, (t >= _t+0.5))) for _t in ta)*ba
+fb = sum(Piecewise((0, (t<_t)), ((t-_t)/0.5, (t<_t+0.5)), (1, (t >= _t+0.5))) for _t in tb)*bb
 N = fa+fb
 
 Nn = N.subs(ba,1)

diff --git a/doc/users/plots/neuronal_event.py b/doc/users/plots/neuronal_event.py
@@ -14,8 +14,8 @@
 ba = Symbol('ba')
 bb = Symbol('bb')
 t = Symbol('t')
-fa = sum([Heaviside(t - _t) for _t in ta]) * ba
-fb = sum([Heaviside(t - _t) for _t in tb]) * bb
+fa = sum(Heaviside(t - _t) for _t in ta) * ba
+fb = sum(Heaviside(t - _t) for _t in tb) * bb
 N = fa + fb
 
 Nn = N.subs(ba, 1)

diff --git a/nipy/algorithms/registration/tests/test_histogram_registration.py b/nipy/algorithms/registration/tests/test_histogram_registration.py
@@ -203,7 +203,7 @@ def test_set_fov():
     R = HistogramRegistration(I, J)
     R.set_fov(npoints=np.prod(I.shape))
     assert R._from_data.shape == I.shape
-    half_shape = tuple([I.shape[i] / 2 for i in range(3)])
+    half_shape = tuple(I.shape[i] / 2 for i in range(3))
     R.set_fov(spacing=(2, 2, 2))
     assert R._from_data.shape == half_shape
     R.set_fov(corner=half_shape)

diff --git a/nipy/algorithms/statistics/utils.py b/nipy/algorithms/statistics/utils.py
@@ -218,7 +218,7 @@ def cube_with_strides_center(center=[0,0,0],
     for m in maximal:
         nm = [vertices[j] for j in m]
         mm.append(nm)
-    maximal = [tuple([vertices[j] for j in m]) for m in maximal]
+    maximal = [tuple(vertices[j] for j in m) for m in maximal]
     return complex(maximal)
 
 

diff --git a/nipy/core/reference/array_coords.py b/nipy/core/reference/array_coords.py
@@ -183,7 +183,7 @@ def from_shape(coordmap, shape):
         are 'array' coordinates.
 
         """
-        slices = tuple([slice(0,s,1) for s in shape])
+        slices = tuple(slice(0,s,1) for s in shape)
         return Grid(coordmap)[slices]
 
     def __repr__(self):

diff --git a/nipy/core/reference/slices.py b/nipy/core/reference/slices.py
@@ -222,4 +222,4 @@ def bounding_box(coordmap, shape):
     ((2.0, 31.0), (4.0, 121.0), (6.0, 101.0))
     """
     e = ArrayCoordMap.from_shape(coordmap, shape)
-    return tuple([(r.min(), r.max()) for r in e.transposed_values])
+    return tuple((r.min(), r.max()) for r in e.transposed_values)
diff --git a/nipy/io/tests/test_save.py b/nipy/io/tests/test_save.py
@@ -85,7 +85,7 @@ def test_save3(in_tmp_path):
     data = tmp.get_fdata().copy()
     img2 = api.Image(data, tmp.coordmap, tmp.metadata)
     del tmp
-    assert tuple([img.shape[l] for l in [3,2,1,0]]) == img2.shape
+    assert tuple(img.shape[l] for l in [3,2,1,0]) == img2.shape
     a = np.transpose(img.get_fdata(), [3,2,1,0])
     assert not np.allclose(img.affine, img2.affine)
     assert np.allclose(a, img2.get_fdata())

diff --git a/nipy/labs/tests/test_statistical_mapping.py b/nipy/labs/tests/test_statistical_mapping.py
@@ -53,17 +53,17 @@ def test_6():
     img = make_surrogate_data()
     clusters, info = cluster_stats(img, img, height_th=.05,
                                    height_control='fdr', cluster_th=0, nulls={})
-    print(len(clusters), sum([c['size'] for c in clusters]))
+    print(len(clusters), sum(c['size'] for c in clusters))
     assert len(clusters)==4
 
 def test7():
     img = make_surrogate_data()
     clusters, info = cluster_stats(img, img, height_th=3., height_control='None', cluster_th=0, nulls={})
-    nstv = sum([c['size'] for c in clusters])
+    nstv = sum(c['size'] for c in clusters)
     assert nstv==36
 
 def test_8():
     img = make_surrogate_data()
     clusters, info = cluster_stats(img, img, height_th=.001, height_control='fpr', cluster_th=0, nulls={})
-    nstv = sum([c['size'] for c in clusters])
+    nstv = sum(c['size'] for c in clusters)
     assert nstv==36
diff --git a/nipy/modalities/fmri/tests/test_glm.py b/nipy/modalities/fmri/tests/test_glm.py
@@ -166,8 +166,8 @@ def test_glm_ar():
     mulm, n, p, q = ar1_glm()
     assert len(mulm.labels_) == n
     assert len(mulm.results_) > 1
-    tmp = sum([mulm.results_[key].theta.shape[1]
-               for key in mulm.results_])
+    tmp = sum(mulm.results_[key].theta.shape[1]
+               for key in mulm.results_)
     assert tmp == n