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[FIX] EpiReg changed to not list certain outputs when 'wmseg' input is specified #3265

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Merged
merged 2 commits into from
Oct 30, 2020
Merged

[FIX] EpiReg changed to not list certain outputs when 'wmseg' input is specified #3265

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4f8aa4b
changed _list_outputs() method of EpiReg interface to check whether '…
oliver-contier Oct 29, 2020
1777245
updated affiliation
oliver-contier Oct 29, 2020
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2 changes: 1 addition & 1 deletion .zenodo.json
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Original file line number Diff line number Diff line change
Expand Up @@ -487,7 +487,7 @@
"name": "Perkins, L. Nathan"
},
{
"affiliation": "Otto-von-Guericke-University Magdeburg, Germany",
"affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences",
"name": "Contier, Oliver",
"orcid": "0000-0002-2983-4709"
},
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21 changes: 10 additions & 11 deletions nipype/interfaces/fsl/epi.py
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Expand Up @@ -1306,20 +1306,19 @@ def _list_outputs(self):
outputs["epi2str_inv"] = os.path.join(
os.getcwd(), self.inputs.out_base + "_inv.mat"
)

if not isdefined(self.inputs.wmseg):
outputs["wmedge"] = os.path.join(
os.getcwd(), self.inputs.out_base + "_fast_wmedge.nii.gz"
)
outputs["wmseg"] = os.path.join(
os.getcwd(), self.inputs.out_base + "_fast_wmseg.nii.gz"
)
outputs["seg"] = os.path.join(
os.getcwd(), self.inputs.out_base + "_fast_seg.nii.gz"
)
outputs["epi2str_mat"] = os.path.join(
os.getcwd(), self.inputs.out_base + ".mat"
)
outputs["wmedge"] = os.path.join(
os.getcwd(), self.inputs.out_base + "_fast_wmedge.nii.gz"
)
outputs["wmseg"] = os.path.join(
os.getcwd(), self.inputs.out_base + "_fast_wmseg.nii.gz"
)
outputs["seg"] = os.path.join(
os.getcwd(), self.inputs.out_base + "_fast_seg.nii.gz"
)

return outputs


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