nipype · tclose · May 17, 2024 · Mar 26, 2024 · Mar 27, 2024 · Mar 28, 2024
diff --git a/.github/workflows/ci-cd.yml b/.github/workflows/ci-cd.yml
@@ -49,19 +49,19 @@ jobs:
         python-version: ${{ matrix.python-version }}
 
     - name: Update build tools
-      run: python3 -m pip install --upgrade pip setuptools wheel
+      run: python3 -m pip install --break-system-packages --upgrade pip setuptools wheel
 
     - name: Install required file-formats packages
       run: |
         pushd required-fileformats
-        python3 -m pip install -r requirements.txt
+        python3 -m pip install --break-system-packages -r requirements.txt
         popd
 
     - name: Install Dipy separately as it was causing trouble
-      run: python3 -m pip install dipy
+      run: python3 -m pip install --break-system-packages dipy
 
     - name: Install Package
-      run: python3 -m pip install .[test]
+      run: python3 -m pip install --break-system-packages .[test]
 
     - name: Pytest
       run: pytest -vvs --cov nipype2pydra --cov-config .coveragerc --cov-report xml
@@ -92,7 +92,7 @@ jobs:
         python-version: '3.11'
 
     - name: Install build tools
-      run: python3 -m pip install build twine
+      run: python3 -m pip install --break-system-packagesbuild twine
 
     - name: Build source and wheel distributions
       run: python3 -m build .

diff --git a/conftest.py b/conftest.py
@@ -1,27 +1,22 @@
 import os
 from pathlib import Path
-import traceback
 import tempfile
 import pytest
 from click.testing import CliRunner
 
 
 PKG_DIR = Path(__file__).parent
 EXAMPLE_SPECS_DIR = PKG_DIR / "example-specs"
-EXAMPLE_TASKS_DIR = EXAMPLE_SPECS_DIR / "task" / "nipype"
+EXAMPLE_INTERFACES_DIR = EXAMPLE_SPECS_DIR / "interface" / "nipype"
 EXAMPLE_WORKFLOWS_DIR = EXAMPLE_SPECS_DIR / "workflow"
+EXAMPLE_PKG_GEN_DIR = EXAMPLE_SPECS_DIR / "pkg-gen"
 
 
 @pytest.fixture
 def gen_test_conftest():
     return PKG_DIR / "scripts" / "pkg_gen" / "resources" / "conftest.py"
 
 
-@pytest.fixture(params=[str(p.stem) for p in EXAMPLE_WORKFLOWS_DIR.glob("*.yaml")])
-def workflow_spec_file(request):
-    return (EXAMPLE_WORKFLOWS_DIR / request.param).with_suffix(".yaml")
-
-
 @pytest.fixture
 def work_dir():
     work_dir = tempfile.mkdtemp()

diff --git a/.../task/function/mapmri_reconstruction.yaml → ...rface/function/mapmri_reconstruction.yaml b/.../task/function/mapmri_reconstruction.yaml → ...rface/function/mapmri_reconstruction.yaml
diff --git a/...nction/mapmri_reconstruction_callables.py → ...nction/mapmri_reconstruction_callables.py b/...nction/mapmri_reconstruction_callables.py → ...nction/mapmri_reconstruction_callables.py
diff --git a/.../task/function/tensor_reconstruction.yaml → ...rface/function/tensor_reconstruction.yaml b/.../task/function/tensor_reconstruction.yaml → ...rface/function/tensor_reconstruction.yaml
diff --git a/...nction/tensor_reconstruction_callables.py → ...nction/tensor_reconstruction_callables.py b/...nction/tensor_reconstruction_callables.py → ...nction/tensor_reconstruction_callables.py
diff --git a/example-specs/task/ghislains/bet.yaml → example-specs/interface/ghislains/bet.yaml b/example-specs/task/ghislains/bet.yaml → example-specs/interface/ghislains/bet.yaml
diff --git a/...le-specs/task/nipype/afni/a_boverlap.yaml → ...ecs/interface/nipype/afni/a_boverlap.yaml b/...le-specs/task/nipype/afni/a_boverlap.yaml → ...ecs/interface/nipype/afni/a_boverlap.yaml
diff --git a/.../task/nipype/afni/a_boverlap_callables.py → ...rface/nipype/afni/a_boverlap_callables.py b/.../task/nipype/afni/a_boverlap_callables.py → ...rface/nipype/afni/a_boverlap_callables.py
diff --git a/...specs/task/nipype/afni/afn_ito_nifti.yaml → .../interface/nipype/afni/afn_ito_nifti.yaml b/...specs/task/nipype/afni/afn_ito_nifti.yaml → .../interface/nipype/afni/afn_ito_nifti.yaml
diff --git a/...sk/nipype/afni/afn_ito_nifti_callables.py → ...ce/nipype/afni/afn_ito_nifti_callables.py b/...sk/nipype/afni/afn_ito_nifti_callables.py → ...ce/nipype/afni/afn_ito_nifti_callables.py
diff --git a/...s/task/nipype/afni/align_epi_anat_py.yaml → ...erface/nipype/afni/align_epi_anat_py.yaml b/...s/task/nipype/afni/align_epi_anat_py.yaml → ...erface/nipype/afni/align_epi_anat_py.yaml
diff --git a/...ipype/afni/align_epi_anat_py_callables.py → ...ipype/afni/align_epi_anat_py_callables.py b/...ipype/afni/align_epi_anat_py_callables.py → ...ipype/afni/align_epi_anat_py_callables.py
diff --git a/...ple-specs/task/nipype/afni/allineate.yaml → ...pecs/interface/nipype/afni/allineate.yaml b/...ple-specs/task/nipype/afni/allineate.yaml → ...pecs/interface/nipype/afni/allineate.yaml
diff --git a/...s/task/nipype/afni/allineate_callables.py → ...erface/nipype/afni/allineate_callables.py b/...s/task/nipype/afni/allineate_callables.py → ...erface/nipype/afni/allineate_callables.py
diff --git a/...ecs/task/nipype/afni/auto_tcorrelate.yaml → ...nterface/nipype/afni/auto_tcorrelate.yaml b/...ecs/task/nipype/afni/auto_tcorrelate.yaml → ...nterface/nipype/afni/auto_tcorrelate.yaml
diff --git a/.../nipype/afni/auto_tcorrelate_callables.py → .../nipype/afni/auto_tcorrelate_callables.py b/.../nipype/afni/auto_tcorrelate_callables.py → .../nipype/afni/auto_tcorrelate_callables.py
diff --git a/...ple-specs/task/nipype/afni/auto_tlrc.yaml → ...pecs/interface/nipype/afni/auto_tlrc.yaml b/...ple-specs/task/nipype/afni/auto_tlrc.yaml → ...pecs/interface/nipype/afni/auto_tlrc.yaml
diff --git a/...s/task/nipype/afni/auto_tlrc_callables.py → ...erface/nipype/afni/auto_tlrc_callables.py b/...s/task/nipype/afni/auto_tlrc_callables.py → ...erface/nipype/afni/auto_tlrc_callables.py
diff --git a/example-specs/task/nipype/afni/autobox.yaml → ...-specs/interface/nipype/afni/autobox.yaml b/example-specs/task/nipype/afni/autobox.yaml → ...-specs/interface/nipype/afni/autobox.yaml
diff --git a/...ecs/task/nipype/afni/autobox_callables.py → ...nterface/nipype/afni/autobox_callables.py b/...ecs/task/nipype/afni/autobox_callables.py → ...nterface/nipype/afni/autobox_callables.py
diff --git a/example-specs/task/nipype/afni/automask.yaml → ...specs/interface/nipype/afni/automask.yaml b/example-specs/task/nipype/afni/automask.yaml → ...specs/interface/nipype/afni/automask.yaml
diff --git a/...cs/task/nipype/afni/automask_callables.py → ...terface/nipype/afni/automask_callables.py b/...cs/task/nipype/afni/automask_callables.py → ...terface/nipype/afni/automask_callables.py
diff --git a/example-specs/task/nipype/afni/axialize.yaml → ...specs/interface/nipype/afni/axialize.yaml b/example-specs/task/nipype/afni/axialize.yaml → ...specs/interface/nipype/afni/axialize.yaml
diff --git a/...cs/task/nipype/afni/axialize_callables.py → ...terface/nipype/afni/axialize_callables.py b/...cs/task/nipype/afni/axialize_callables.py → ...terface/nipype/afni/axialize_callables.py
diff --git a/example-specs/task/nipype/afni/bandpass.yaml → ...specs/interface/nipype/afni/bandpass.yaml b/example-specs/task/nipype/afni/bandpass.yaml → ...specs/interface/nipype/afni/bandpass.yaml
diff --git a/...cs/task/nipype/afni/bandpass_callables.py → ...terface/nipype/afni/bandpass_callables.py b/...cs/task/nipype/afni/bandpass_callables.py → ...terface/nipype/afni/bandpass_callables.py
diff --git a/...-specs/task/nipype/afni/blur_in_mask.yaml → ...s/interface/nipype/afni/blur_in_mask.yaml b/...-specs/task/nipype/afni/blur_in_mask.yaml → ...s/interface/nipype/afni/blur_in_mask.yaml
diff --git a/...ask/nipype/afni/blur_in_mask_callables.py → ...ace/nipype/afni/blur_in_mask_callables.py b/...ask/nipype/afni/blur_in_mask_callables.py → ...ace/nipype/afni/blur_in_mask_callables.py
diff --git a/...-specs/task/nipype/afni/blur_to_fwhm.yaml → ...s/interface/nipype/afni/blur_to_fwhm.yaml b/...-specs/task/nipype/afni/blur_to_fwhm.yaml → ...s/interface/nipype/afni/blur_to_fwhm.yaml
diff --git a/...ask/nipype/afni/blur_to_fwhm_callables.py → ...ace/nipype/afni/blur_to_fwhm_callables.py b/...ask/nipype/afni/blur_to_fwhm_callables.py → ...ace/nipype/afni/blur_to_fwhm_callables.py
diff --git a/...le-specs/task/nipype/afni/brick_stat.yaml → ...ecs/interface/nipype/afni/brick_stat.yaml b/...le-specs/task/nipype/afni/brick_stat.yaml → ...ecs/interface/nipype/afni/brick_stat.yaml
diff --git a/.../task/nipype/afni/brick_stat_callables.py → ...rface/nipype/afni/brick_stat_callables.py b/.../task/nipype/afni/brick_stat_callables.py → ...rface/nipype/afni/brick_stat_callables.py
diff --git a/example-specs/task/nipype/afni/bucket.yaml → ...e-specs/interface/nipype/afni/bucket.yaml b/example-specs/task/nipype/afni/bucket.yaml → ...e-specs/interface/nipype/afni/bucket.yaml
diff --git a/...pecs/task/nipype/afni/bucket_callables.py → ...interface/nipype/afni/bucket_callables.py b/...pecs/task/nipype/afni/bucket_callables.py → ...interface/nipype/afni/bucket_callables.py
diff --git a/example-specs/task/nipype/afni/calc.yaml → ...ple-specs/interface/nipype/afni/calc.yaml b/example-specs/task/nipype/afni/calc.yaml → ...ple-specs/interface/nipype/afni/calc.yaml
diff --git a/...-specs/task/nipype/afni/calc_callables.py → ...s/interface/nipype/afni/calc_callables.py b/...-specs/task/nipype/afni/calc_callables.py → ...s/interface/nipype/afni/calc_callables.py
diff --git a/example-specs/task/nipype/afni/cat.yaml → example-specs/interface/nipype/afni/cat.yaml b/example-specs/task/nipype/afni/cat.yaml → example-specs/interface/nipype/afni/cat.yaml
diff --git a/...e-specs/task/nipype/afni/cat_callables.py → ...cs/interface/nipype/afni/cat_callables.py b/...e-specs/task/nipype/afni/cat_callables.py → ...cs/interface/nipype/afni/cat_callables.py
diff --git a/...le-specs/task/nipype/afni/cat_matvec.yaml → ...ecs/interface/nipype/afni/cat_matvec.yaml b/...le-specs/task/nipype/afni/cat_matvec.yaml → ...ecs/interface/nipype/afni/cat_matvec.yaml
diff --git a/.../task/nipype/afni/cat_matvec_callables.py → ...rface/nipype/afni/cat_matvec_callables.py b/.../task/nipype/afni/cat_matvec_callables.py → ...rface/nipype/afni/cat_matvec_callables.py
diff --git a/...e-specs/task/nipype/afni/center_mass.yaml → ...cs/interface/nipype/afni/center_mass.yaml b/...e-specs/task/nipype/afni/center_mass.yaml → ...cs/interface/nipype/afni/center_mass.yaml
diff --git a/...task/nipype/afni/center_mass_callables.py → ...face/nipype/afni/center_mass_callables.py b/...task/nipype/afni/center_mass_callables.py → ...face/nipype/afni/center_mass_callables.py
diff --git a/...le-specs/task/nipype/afni/clip_level.yaml → ...ecs/interface/nipype/afni/clip_level.yaml b/...le-specs/task/nipype/afni/clip_level.yaml → ...ecs/interface/nipype/afni/clip_level.yaml
diff --git a/.../task/nipype/afni/clip_level_callables.py → ...rface/nipype/afni/clip_level_callables.py b/.../task/nipype/afni/clip_level_callables.py → ...rface/nipype/afni/clip_level_callables.py
diff --git a/...-specs/task/nipype/afni/convert_dset.yaml → ...s/interface/nipype/afni/convert_dset.yaml b/...-specs/task/nipype/afni/convert_dset.yaml → ...s/interface/nipype/afni/convert_dset.yaml
diff --git a/...ask/nipype/afni/convert_dset_callables.py → ...ace/nipype/afni/convert_dset_callables.py b/...ask/nipype/afni/convert_dset_callables.py → ...ace/nipype/afni/convert_dset_callables.py
diff --git a/example-specs/task/nipype/afni/copy.yaml → ...ple-specs/interface/nipype/afni/copy.yaml b/example-specs/task/nipype/afni/copy.yaml → ...ple-specs/interface/nipype/afni/copy.yaml
diff --git a/...-specs/task/nipype/afni/copy_callables.py → ...s/interface/nipype/afni/copy_callables.py b/...-specs/task/nipype/afni/copy_callables.py → ...s/interface/nipype/afni/copy_callables.py
diff --git a/...le-specs/task/nipype/afni/deconvolve.yaml → ...ecs/interface/nipype/afni/deconvolve.yaml b/...le-specs/task/nipype/afni/deconvolve.yaml → ...ecs/interface/nipype/afni/deconvolve.yaml
diff --git a/.../task/nipype/afni/deconvolve_callables.py → ...rface/nipype/afni/deconvolve_callables.py b/.../task/nipype/afni/deconvolve_callables.py → ...rface/nipype/afni/deconvolve_callables.py
diff --git a/...s/task/nipype/afni/degree_centrality.yaml → ...erface/nipype/afni/degree_centrality.yaml b/...s/task/nipype/afni/degree_centrality.yaml → ...erface/nipype/afni/degree_centrality.yaml
diff --git a/...ipype/afni/degree_centrality_callables.py → ...ipype/afni/degree_centrality_callables.py b/...ipype/afni/degree_centrality_callables.py → ...ipype/afni/degree_centrality_callables.py
diff --git a/example-specs/task/nipype/afni/despike.yaml → ...-specs/interface/nipype/afni/despike.yaml b/example-specs/task/nipype/afni/despike.yaml → ...-specs/interface/nipype/afni/despike.yaml
diff --git a/...ecs/task/nipype/afni/despike_callables.py → ...nterface/nipype/afni/despike_callables.py b/...ecs/task/nipype/afni/despike_callables.py → ...nterface/nipype/afni/despike_callables.py
diff --git a/example-specs/task/nipype/afni/detrend.yaml → ...-specs/interface/nipype/afni/detrend.yaml b/example-specs/task/nipype/afni/detrend.yaml → ...-specs/interface/nipype/afni/detrend.yaml
diff --git a/...ecs/task/nipype/afni/detrend_callables.py → ...nterface/nipype/afni/detrend_callables.py b/...ecs/task/nipype/afni/detrend_callables.py → ...nterface/nipype/afni/detrend_callables.py
diff --git a/example-specs/task/nipype/afni/dot.yaml → example-specs/interface/nipype/afni/dot.yaml b/example-specs/task/nipype/afni/dot.yaml → example-specs/interface/nipype/afni/dot.yaml
diff --git a/...e-specs/task/nipype/afni/dot_callables.py → ...cs/interface/nipype/afni/dot_callables.py b/...e-specs/task/nipype/afni/dot_callables.py → ...cs/interface/nipype/afni/dot_callables.py
diff --git a/example-specs/task/nipype/afni/ecm.yaml → example-specs/interface/nipype/afni/ecm.yaml b/example-specs/task/nipype/afni/ecm.yaml → example-specs/interface/nipype/afni/ecm.yaml
diff --git a/...e-specs/task/nipype/afni/ecm_callables.py → ...cs/interface/nipype/afni/ecm_callables.py b/...e-specs/task/nipype/afni/ecm_callables.py → ...cs/interface/nipype/afni/ecm_callables.py
diff --git a/example-specs/task/nipype/afni/edge_3.yaml → ...e-specs/interface/nipype/afni/edge_3.yaml b/example-specs/task/nipype/afni/edge_3.yaml → ...e-specs/interface/nipype/afni/edge_3.yaml
diff --git a/...pecs/task/nipype/afni/edge_3_callables.py → ...interface/nipype/afni/edge_3_callables.py b/...pecs/task/nipype/afni/edge_3_callables.py → ...interface/nipype/afni/edge_3_callables.py
diff --git a/example-specs/task/nipype/afni/eval.yaml → ...ple-specs/interface/nipype/afni/eval.yaml b/example-specs/task/nipype/afni/eval.yaml → ...ple-specs/interface/nipype/afni/eval.yaml
diff --git a/...-specs/task/nipype/afni/eval_callables.py → ...s/interface/nipype/afni/eval_callables.py b/...-specs/task/nipype/afni/eval_callables.py → ...s/interface/nipype/afni/eval_callables.py
diff --git a/example-specs/task/nipype/afni/fim.yaml → example-specs/interface/nipype/afni/fim.yaml b/example-specs/task/nipype/afni/fim.yaml → example-specs/interface/nipype/afni/fim.yaml
diff --git a/...e-specs/task/nipype/afni/fim_callables.py → ...cs/interface/nipype/afni/fim_callables.py b/...e-specs/task/nipype/afni/fim_callables.py → ...cs/interface/nipype/afni/fim_callables.py
diff --git a/example-specs/task/nipype/afni/fourier.yaml → ...-specs/interface/nipype/afni/fourier.yaml b/example-specs/task/nipype/afni/fourier.yaml → ...-specs/interface/nipype/afni/fourier.yaml
diff --git a/...ecs/task/nipype/afni/fourier_callables.py → ...nterface/nipype/afni/fourier_callables.py b/...ecs/task/nipype/afni/fourier_callables.py → ...nterface/nipype/afni/fourier_callables.py
diff --git a/example-specs/task/nipype/afni/fwh_mx.yaml → ...e-specs/interface/nipype/afni/fwh_mx.yaml b/example-specs/task/nipype/afni/fwh_mx.yaml → ...e-specs/interface/nipype/afni/fwh_mx.yaml
diff --git a/...pecs/task/nipype/afni/fwh_mx_callables.py → ...interface/nipype/afni/fwh_mx_callables.py b/...pecs/task/nipype/afni/fwh_mx_callables.py → ...interface/nipype/afni/fwh_mx_callables.py
diff --git a/example-specs/task/nipype/afni/gcor.yaml → ...ple-specs/interface/nipype/afni/gcor.yaml b/example-specs/task/nipype/afni/gcor.yaml → ...ple-specs/interface/nipype/afni/gcor.yaml
diff --git a/...-specs/task/nipype/afni/gcor_callables.py → ...s/interface/nipype/afni/gcor_callables.py b/...-specs/task/nipype/afni/gcor_callables.py → ...s/interface/nipype/afni/gcor_callables.py
diff --git a/example-specs/task/nipype/afni/hist.yaml → ...ple-specs/interface/nipype/afni/hist.yaml b/example-specs/task/nipype/afni/hist.yaml → ...ple-specs/interface/nipype/afni/hist.yaml
diff --git a/...-specs/task/nipype/afni/hist_callables.py → ...s/interface/nipype/afni/hist_callables.py b/...-specs/task/nipype/afni/hist_callables.py → ...s/interface/nipype/afni/hist_callables.py
diff --git a/example-specs/task/nipype/afni/lfcd.yaml → ...ple-specs/interface/nipype/afni/lfcd.yaml b/example-specs/task/nipype/afni/lfcd.yaml → ...ple-specs/interface/nipype/afni/lfcd.yaml
diff --git a/...-specs/task/nipype/afni/lfcd_callables.py → ...s/interface/nipype/afni/lfcd_callables.py b/...-specs/task/nipype/afni/lfcd_callables.py → ...s/interface/nipype/afni/lfcd_callables.py
diff --git a/...-specs/task/nipype/afni/local_bistat.yaml → ...s/interface/nipype/afni/local_bistat.yaml b/...-specs/task/nipype/afni/local_bistat.yaml → ...s/interface/nipype/afni/local_bistat.yaml
diff --git a/...ask/nipype/afni/local_bistat_callables.py → ...ace/nipype/afni/local_bistat_callables.py b/...ask/nipype/afni/local_bistat_callables.py → ...ace/nipype/afni/local_bistat_callables.py
diff --git a/...ple-specs/task/nipype/afni/localstat.yaml → ...pecs/interface/nipype/afni/localstat.yaml b/...ple-specs/task/nipype/afni/localstat.yaml → ...pecs/interface/nipype/afni/localstat.yaml
diff --git a/...s/task/nipype/afni/localstat_callables.py → ...erface/nipype/afni/localstat_callables.py b/...s/task/nipype/afni/localstat_callables.py → ...erface/nipype/afni/localstat_callables.py
diff --git a/...ple-specs/task/nipype/afni/mask_tool.yaml → ...pecs/interface/nipype/afni/mask_tool.yaml b/...ple-specs/task/nipype/afni/mask_tool.yaml → ...pecs/interface/nipype/afni/mask_tool.yaml
diff --git a/...s/task/nipype/afni/mask_tool_callables.py → ...erface/nipype/afni/mask_tool_callables.py b/...s/task/nipype/afni/mask_tool_callables.py → ...erface/nipype/afni/mask_tool_callables.py
diff --git a/example-specs/task/nipype/afni/maskave.yaml → ...-specs/interface/nipype/afni/maskave.yaml b/example-specs/task/nipype/afni/maskave.yaml → ...-specs/interface/nipype/afni/maskave.yaml
diff --git a/...ecs/task/nipype/afni/maskave_callables.py → ...nterface/nipype/afni/maskave_callables.py b/...ecs/task/nipype/afni/maskave_callables.py → ...nterface/nipype/afni/maskave_callables.py
diff --git a/example-specs/task/nipype/afni/means.yaml → ...le-specs/interface/nipype/afni/means.yaml b/example-specs/task/nipype/afni/means.yaml → ...le-specs/interface/nipype/afni/means.yaml
diff --git a/...specs/task/nipype/afni/means_callables.py → .../interface/nipype/afni/means_callables.py b/...specs/task/nipype/afni/means_callables.py → .../interface/nipype/afni/means_callables.py
diff --git a/example-specs/task/nipype/afni/merge.yaml → ...le-specs/interface/nipype/afni/merge.yaml b/example-specs/task/nipype/afni/merge.yaml → ...le-specs/interface/nipype/afni/merge.yaml
diff --git a/...specs/task/nipype/afni/merge_callables.py → .../interface/nipype/afni/merge_callables.py b/...specs/task/nipype/afni/merge_callables.py → .../interface/nipype/afni/merge_callables.py
diff --git a/example-specs/task/nipype/afni/net_corr.yaml → ...specs/interface/nipype/afni/net_corr.yaml b/example-specs/task/nipype/afni/net_corr.yaml → ...specs/interface/nipype/afni/net_corr.yaml
diff --git a/...cs/task/nipype/afni/net_corr_callables.py → ...terface/nipype/afni/net_corr_callables.py b/...cs/task/nipype/afni/net_corr_callables.py → ...terface/nipype/afni/net_corr_callables.py
diff --git a/example-specs/task/nipype/afni/notes.yaml → ...le-specs/interface/nipype/afni/notes.yaml b/example-specs/task/nipype/afni/notes.yaml → ...le-specs/interface/nipype/afni/notes.yaml
diff --git a/...specs/task/nipype/afni/notes_callables.py → .../interface/nipype/afni/notes_callables.py b/...specs/task/nipype/afni/notes_callables.py → .../interface/nipype/afni/notes_callables.py
diff --git a/...-specs/task/nipype/afni/nwarp_adjust.yaml → ...s/interface/nipype/afni/nwarp_adjust.yaml b/...-specs/task/nipype/afni/nwarp_adjust.yaml → ...s/interface/nipype/afni/nwarp_adjust.yaml
diff --git a/...ask/nipype/afni/nwarp_adjust_callables.py → ...ace/nipype/afni/nwarp_adjust_callables.py b/...ask/nipype/afni/nwarp_adjust_callables.py → ...ace/nipype/afni/nwarp_adjust_callables.py
diff --git a/...e-specs/task/nipype/afni/nwarp_apply.yaml → ...cs/interface/nipype/afni/nwarp_apply.yaml b/...e-specs/task/nipype/afni/nwarp_apply.yaml → ...cs/interface/nipype/afni/nwarp_apply.yaml
diff --git a/...task/nipype/afni/nwarp_apply_callables.py → ...face/nipype/afni/nwarp_apply_callables.py b/...task/nipype/afni/nwarp_apply_callables.py → ...face/nipype/afni/nwarp_apply_callables.py
diff --git a/...ple-specs/task/nipype/afni/nwarp_cat.yaml → ...pecs/interface/nipype/afni/nwarp_cat.yaml b/...ple-specs/task/nipype/afni/nwarp_cat.yaml → ...pecs/interface/nipype/afni/nwarp_cat.yaml
diff --git a/...s/task/nipype/afni/nwarp_cat_callables.py → ...erface/nipype/afni/nwarp_cat_callables.py b/...s/task/nipype/afni/nwarp_cat_callables.py → ...erface/nipype/afni/nwarp_cat_callables.py
diff --git a/...specs/task/nipype/afni/one_d_tool_py.yaml → .../interface/nipype/afni/one_d_tool_py.yaml b/...specs/task/nipype/afni/one_d_tool_py.yaml → .../interface/nipype/afni/one_d_tool_py.yaml
diff --git a/...sk/nipype/afni/one_d_tool_py_callables.py → ...ce/nipype/afni/one_d_tool_py_callables.py b/...sk/nipype/afni/one_d_tool_py_callables.py → ...ce/nipype/afni/one_d_tool_py_callables.py
diff --git a/...specs/task/nipype/afni/outlier_count.yaml → .../interface/nipype/afni/outlier_count.yaml b/...specs/task/nipype/afni/outlier_count.yaml → .../interface/nipype/afni/outlier_count.yaml
diff --git a/...sk/nipype/afni/outlier_count_callables.py → ...ce/nipype/afni/outlier_count_callables.py b/...sk/nipype/afni/outlier_count_callables.py → ...ce/nipype/afni/outlier_count_callables.py
diff --git a/...specs/task/nipype/afni/quality_index.yaml → .../interface/nipype/afni/quality_index.yaml b/...specs/task/nipype/afni/quality_index.yaml → .../interface/nipype/afni/quality_index.yaml
diff --git a/...sk/nipype/afni/quality_index_callables.py → ...ce/nipype/afni/quality_index_callables.py b/...sk/nipype/afni/quality_index_callables.py → ...ce/nipype/afni/quality_index_callables.py
diff --git a/example-specs/task/nipype/afni/qwarp.yaml → ...le-specs/interface/nipype/afni/qwarp.yaml b/example-specs/task/nipype/afni/qwarp.yaml → ...le-specs/interface/nipype/afni/qwarp.yaml
diff --git a/...specs/task/nipype/afni/qwarp_callables.py → .../interface/nipype/afni/qwarp_callables.py b/...specs/task/nipype/afni/qwarp_callables.py → .../interface/nipype/afni/qwarp_callables.py
diff --git a/...cs/task/nipype/afni/qwarp_plus_minus.yaml → ...terface/nipype/afni/qwarp_plus_minus.yaml b/...cs/task/nipype/afni/qwarp_plus_minus.yaml → ...terface/nipype/afni/qwarp_plus_minus.yaml
diff --git a/...nipype/afni/qwarp_plus_minus_callables.py → ...nipype/afni/qwarp_plus_minus_callables.py b/...nipype/afni/qwarp_plus_minus_callables.py → ...nipype/afni/qwarp_plus_minus_callables.py
diff --git a/example-specs/task/nipype/afni/re_ho.yaml → ...le-specs/interface/nipype/afni/re_ho.yaml b/example-specs/task/nipype/afni/re_ho.yaml → ...le-specs/interface/nipype/afni/re_ho.yaml
diff --git a/...specs/task/nipype/afni/re_ho_callables.py → .../interface/nipype/afni/re_ho_callables.py b/...specs/task/nipype/afni/re_ho_callables.py → .../interface/nipype/afni/re_ho_callables.py
diff --git a/example-specs/task/nipype/afni/refit.yaml → ...le-specs/interface/nipype/afni/refit.yaml b/example-specs/task/nipype/afni/refit.yaml → ...le-specs/interface/nipype/afni/refit.yaml
diff --git a/...specs/task/nipype/afni/refit_callables.py → .../interface/nipype/afni/refit_callables.py b/...specs/task/nipype/afni/refit_callables.py → .../interface/nipype/afni/refit_callables.py
diff --git a/example-specs/task/nipype/afni/remlfit.yaml → ...-specs/interface/nipype/afni/remlfit.yaml b/example-specs/task/nipype/afni/remlfit.yaml → ...-specs/interface/nipype/afni/remlfit.yaml
diff --git a/...ecs/task/nipype/afni/remlfit_callables.py → ...nterface/nipype/afni/remlfit_callables.py b/...ecs/task/nipype/afni/remlfit_callables.py → ...nterface/nipype/afni/remlfit_callables.py
diff --git a/example-specs/task/nipype/afni/resample.yaml → ...specs/interface/nipype/afni/resample.yaml b/example-specs/task/nipype/afni/resample.yaml → ...specs/interface/nipype/afni/resample.yaml
diff --git a/...cs/task/nipype/afni/resample_callables.py → ...terface/nipype/afni/resample_callables.py b/...cs/task/nipype/afni/resample_callables.py → ...terface/nipype/afni/resample_callables.py
diff --git a/...ple-specs/task/nipype/afni/retroicor.yaml → ...pecs/interface/nipype/afni/retroicor.yaml b/...ple-specs/task/nipype/afni/retroicor.yaml → ...pecs/interface/nipype/afni/retroicor.yaml
diff --git a/...s/task/nipype/afni/retroicor_callables.py → ...erface/nipype/afni/retroicor_callables.py b/...s/task/nipype/afni/retroicor_callables.py → ...erface/nipype/afni/retroicor_callables.py
diff --git a/...ple-specs/task/nipype/afni/roi_stats.yaml → ...pecs/interface/nipype/afni/roi_stats.yaml b/...ple-specs/task/nipype/afni/roi_stats.yaml → ...pecs/interface/nipype/afni/roi_stats.yaml
diff --git a/...s/task/nipype/afni/roi_stats_callables.py → ...erface/nipype/afni/roi_stats_callables.py b/...s/task/nipype/afni/roi_stats_callables.py → ...erface/nipype/afni/roi_stats_callables.py
diff --git a/example-specs/task/nipype/afni/seg.yaml → example-specs/interface/nipype/afni/seg.yaml b/example-specs/task/nipype/afni/seg.yaml → example-specs/interface/nipype/afni/seg.yaml
diff --git a/...e-specs/task/nipype/afni/seg_callables.py → ...cs/interface/nipype/afni/seg_callables.py b/...e-specs/task/nipype/afni/seg_callables.py → ...cs/interface/nipype/afni/seg_callables.py
diff --git a/...e-specs/task/nipype/afni/skull_strip.yaml → ...cs/interface/nipype/afni/skull_strip.yaml b/...e-specs/task/nipype/afni/skull_strip.yaml → ...cs/interface/nipype/afni/skull_strip.yaml
diff --git a/...task/nipype/afni/skull_strip_callables.py → ...face/nipype/afni/skull_strip_callables.py b/...task/nipype/afni/skull_strip_callables.py → ...face/nipype/afni/skull_strip_callables.py
diff --git a/example-specs/task/nipype/afni/svm_test.yaml → ...specs/interface/nipype/afni/svm_test.yaml b/example-specs/task/nipype/afni/svm_test.yaml → ...specs/interface/nipype/afni/svm_test.yaml
diff --git a/...cs/task/nipype/afni/svm_test_callables.py → ...terface/nipype/afni/svm_test_callables.py b/...cs/task/nipype/afni/svm_test_callables.py → ...terface/nipype/afni/svm_test_callables.py
diff --git a/...ple-specs/task/nipype/afni/svm_train.yaml → ...pecs/interface/nipype/afni/svm_train.yaml b/...ple-specs/task/nipype/afni/svm_train.yaml → ...pecs/interface/nipype/afni/svm_train.yaml
diff --git a/...s/task/nipype/afni/svm_train_callables.py → ...erface/nipype/afni/svm_train_callables.py b/...s/task/nipype/afni/svm_train_callables.py → ...erface/nipype/afni/svm_train_callables.py
diff --git a/...le-specs/task/nipype/afni/synthesize.yaml → ...ecs/interface/nipype/afni/synthesize.yaml b/...le-specs/task/nipype/afni/synthesize.yaml → ...ecs/interface/nipype/afni/synthesize.yaml
diff --git a/.../task/nipype/afni/synthesize_callables.py → ...rface/nipype/afni/synthesize_callables.py b/.../task/nipype/afni/synthesize_callables.py → ...rface/nipype/afni/synthesize_callables.py
diff --git a/example-specs/task/nipype/afni/t_cat.yaml → ...le-specs/interface/nipype/afni/t_cat.yaml b/example-specs/task/nipype/afni/t_cat.yaml → ...le-specs/interface/nipype/afni/t_cat.yaml
diff --git a/...specs/task/nipype/afni/t_cat_callables.py → .../interface/nipype/afni/t_cat_callables.py b/...specs/task/nipype/afni/t_cat_callables.py → .../interface/nipype/afni/t_cat_callables.py
diff --git a/...ecs/task/nipype/afni/t_cat_sub_brick.yaml → ...nterface/nipype/afni/t_cat_sub_brick.yaml b/...ecs/task/nipype/afni/t_cat_sub_brick.yaml → ...nterface/nipype/afni/t_cat_sub_brick.yaml
diff --git a/.../nipype/afni/t_cat_sub_brick_callables.py → .../nipype/afni/t_cat_sub_brick_callables.py b/.../nipype/afni/t_cat_sub_brick_callables.py → .../nipype/afni/t_cat_sub_brick_callables.py
diff --git a/...ple-specs/task/nipype/afni/t_corr_1d.yaml → ...pecs/interface/nipype/afni/t_corr_1d.yaml b/...ple-specs/task/nipype/afni/t_corr_1d.yaml → ...pecs/interface/nipype/afni/t_corr_1d.yaml
diff --git a/...s/task/nipype/afni/t_corr_1d_callables.py → ...erface/nipype/afni/t_corr_1d_callables.py b/...s/task/nipype/afni/t_corr_1d_callables.py → ...erface/nipype/afni/t_corr_1d_callables.py
diff --git a/...le-specs/task/nipype/afni/t_corr_map.yaml → ...ecs/interface/nipype/afni/t_corr_map.yaml b/...le-specs/task/nipype/afni/t_corr_map.yaml → ...ecs/interface/nipype/afni/t_corr_map.yaml
diff --git a/.../task/nipype/afni/t_corr_map_callables.py → ...rface/nipype/afni/t_corr_map_callables.py b/.../task/nipype/afni/t_corr_map_callables.py → ...rface/nipype/afni/t_corr_map_callables.py
diff --git a/...e-specs/task/nipype/afni/t_correlate.yaml → ...cs/interface/nipype/afni/t_correlate.yaml b/...e-specs/task/nipype/afni/t_correlate.yaml → ...cs/interface/nipype/afni/t_correlate.yaml
diff --git a/...task/nipype/afni/t_correlate_callables.py → ...face/nipype/afni/t_correlate_callables.py b/...task/nipype/afni/t_correlate_callables.py → ...face/nipype/afni/t_correlate_callables.py
diff --git a/example-specs/task/nipype/afni/t_norm.yaml → ...e-specs/interface/nipype/afni/t_norm.yaml b/example-specs/task/nipype/afni/t_norm.yaml → ...e-specs/interface/nipype/afni/t_norm.yaml
diff --git a/...pecs/task/nipype/afni/t_norm_callables.py → ...interface/nipype/afni/t_norm_callables.py b/...pecs/task/nipype/afni/t_norm_callables.py → ...interface/nipype/afni/t_norm_callables.py
diff --git a/...ple-specs/task/nipype/afni/t_project.yaml → ...pecs/interface/nipype/afni/t_project.yaml b/...ple-specs/task/nipype/afni/t_project.yaml → ...pecs/interface/nipype/afni/t_project.yaml
diff --git a/...s/task/nipype/afni/t_project_callables.py → ...erface/nipype/afni/t_project_callables.py b/...s/task/nipype/afni/t_project_callables.py → ...erface/nipype/afni/t_project_callables.py
diff --git a/example-specs/task/nipype/afni/t_shift.yaml → ...-specs/interface/nipype/afni/t_shift.yaml b/example-specs/task/nipype/afni/t_shift.yaml → ...-specs/interface/nipype/afni/t_shift.yaml
diff --git a/...ecs/task/nipype/afni/t_shift_callables.py → ...nterface/nipype/afni/t_shift_callables.py b/...ecs/task/nipype/afni/t_shift_callables.py → ...nterface/nipype/afni/t_shift_callables.py
diff --git a/example-specs/task/nipype/afni/t_smooth.yaml → ...specs/interface/nipype/afni/t_smooth.yaml b/example-specs/task/nipype/afni/t_smooth.yaml → ...specs/interface/nipype/afni/t_smooth.yaml
diff --git a/...cs/task/nipype/afni/t_smooth_callables.py → ...terface/nipype/afni/t_smooth_callables.py b/...cs/task/nipype/afni/t_smooth_callables.py → ...terface/nipype/afni/t_smooth_callables.py
diff --git a/example-specs/task/nipype/afni/t_stat.yaml → ...e-specs/interface/nipype/afni/t_stat.yaml b/example-specs/task/nipype/afni/t_stat.yaml → ...e-specs/interface/nipype/afni/t_stat.yaml
diff --git a/...pecs/task/nipype/afni/t_stat_callables.py → ...interface/nipype/afni/t_stat_callables.py b/...pecs/task/nipype/afni/t_stat_callables.py → ...interface/nipype/afni/t_stat_callables.py
diff --git a/example-specs/task/nipype/afni/to_3d.yaml → ...le-specs/interface/nipype/afni/to_3d.yaml b/example-specs/task/nipype/afni/to_3d.yaml → ...le-specs/interface/nipype/afni/to_3d.yaml
diff --git a/...specs/task/nipype/afni/to_3d_callables.py → .../interface/nipype/afni/to_3d_callables.py b/...specs/task/nipype/afni/to_3d_callables.py → .../interface/nipype/afni/to_3d_callables.py
diff --git a/example-specs/task/nipype/afni/undump.yaml → ...e-specs/interface/nipype/afni/undump.yaml b/example-specs/task/nipype/afni/undump.yaml → ...e-specs/interface/nipype/afni/undump.yaml
diff --git a/...pecs/task/nipype/afni/undump_callables.py → ...interface/nipype/afni/undump_callables.py b/...pecs/task/nipype/afni/undump_callables.py → ...interface/nipype/afni/undump_callables.py
diff --git a/example-specs/task/nipype/afni/unifize.yaml → ...-specs/interface/nipype/afni/unifize.yaml b/example-specs/task/nipype/afni/unifize.yaml → ...-specs/interface/nipype/afni/unifize.yaml
diff --git a/...ecs/task/nipype/afni/unifize_callables.py → ...nterface/nipype/afni/unifize_callables.py b/...ecs/task/nipype/afni/unifize_callables.py → ...nterface/nipype/afni/unifize_callables.py
diff --git a/example-specs/task/nipype/afni/volreg.yaml → ...e-specs/interface/nipype/afni/volreg.yaml b/example-specs/task/nipype/afni/volreg.yaml → ...e-specs/interface/nipype/afni/volreg.yaml
diff --git a/...pecs/task/nipype/afni/volreg_callables.py → ...interface/nipype/afni/volreg_callables.py b/...pecs/task/nipype/afni/volreg_callables.py → ...interface/nipype/afni/volreg_callables.py
diff --git a/example-specs/task/nipype/afni/warp.yaml → ...ple-specs/interface/nipype/afni/warp.yaml b/example-specs/task/nipype/afni/warp.yaml → ...ple-specs/interface/nipype/afni/warp.yaml
diff --git a/...-specs/task/nipype/afni/warp_callables.py → ...s/interface/nipype/afni/warp_callables.py b/...-specs/task/nipype/afni/warp_callables.py → ...s/interface/nipype/afni/warp_callables.py
diff --git a/example-specs/task/nipype/afni/z_cut_up.yaml → ...specs/interface/nipype/afni/z_cut_up.yaml b/example-specs/task/nipype/afni/z_cut_up.yaml → ...specs/interface/nipype/afni/z_cut_up.yaml
diff --git a/...cs/task/nipype/afni/z_cut_up_callables.py → ...terface/nipype/afni/z_cut_up_callables.py b/...cs/task/nipype/afni/z_cut_up_callables.py → ...terface/nipype/afni/z_cut_up_callables.py
diff --git a/example-specs/task/nipype/afni/zcat.yaml → ...ple-specs/interface/nipype/afni/zcat.yaml b/example-specs/task/nipype/afni/zcat.yaml → ...ple-specs/interface/nipype/afni/zcat.yaml
diff --git a/...-specs/task/nipype/afni/zcat_callables.py → ...s/interface/nipype/afni/zcat_callables.py b/...-specs/task/nipype/afni/zcat_callables.py → ...s/interface/nipype/afni/zcat_callables.py
diff --git a/example-specs/task/nipype/afni/zeropad.yaml → ...-specs/interface/nipype/afni/zeropad.yaml b/example-specs/task/nipype/afni/zeropad.yaml → ...-specs/interface/nipype/afni/zeropad.yaml
diff --git a/...ecs/task/nipype/afni/zeropad_callables.py → ...nterface/nipype/afni/zeropad_callables.py b/...ecs/task/nipype/afni/zeropad_callables.py → ...nterface/nipype/afni/zeropad_callables.py
diff --git a/.../task/nipype/ants/affine_initializer.yaml → ...rface/nipype/ants/affine_initializer.yaml b/.../task/nipype/ants/affine_initializer.yaml → ...rface/nipype/ants/affine_initializer.yaml
diff --git a/...pype/ants/affine_initializer_callables.py → ...pype/ants/affine_initializer_callables.py b/...pype/ants/affine_initializer_callables.py → ...pype/ants/affine_initializer_callables.py
diff --git a/example-specs/task/nipype/ants/ai.yaml → example-specs/interface/nipype/ants/ai.yaml b/example-specs/task/nipype/ants/ai.yaml → example-specs/interface/nipype/ants/ai.yaml
diff --git a/...le-specs/task/nipype/ants/ai_callables.py → ...ecs/interface/nipype/ants/ai_callables.py b/...le-specs/task/nipype/ants/ai_callables.py → ...ecs/interface/nipype/ants/ai_callables.py
diff --git a/example-specs/task/nipype/ants/ants.yaml → ...ple-specs/interface/nipype/ants/ants.yaml b/example-specs/task/nipype/ants/ants.yaml → ...ple-specs/interface/nipype/ants/ants.yaml
diff --git a/...-specs/task/nipype/ants/ants_callables.py → ...s/interface/nipype/ants/ants_callables.py b/...-specs/task/nipype/ants/ants_callables.py → ...s/interface/nipype/ants/ants_callables.py
diff --git a/...s/task/nipype/ants/ants_introduction.yaml → ...erface/nipype/ants/ants_introduction.yaml b/...s/task/nipype/ants/ants_introduction.yaml → ...erface/nipype/ants/ants_introduction.yaml
diff --git a/...ipype/ants/ants_introduction_callables.py → ...ipype/ants/ants_introduction_callables.py b/...ipype/ants/ants_introduction_callables.py → ...ipype/ants/ants_introduction_callables.py
diff --git a/...cs/task/nipype/ants/apply_transforms.yaml → ...terface/nipype/ants/apply_transforms.yaml b/...cs/task/nipype/ants/apply_transforms.yaml → ...terface/nipype/ants/apply_transforms.yaml
diff --git a/...nipype/ants/apply_transforms_callables.py → ...nipype/ants/apply_transforms_callables.py b/...nipype/ants/apply_transforms_callables.py → ...nipype/ants/apply_transforms_callables.py
diff --git a/...pype/ants/apply_transforms_to_points.yaml → ...pype/ants/apply_transforms_to_points.yaml b/...pype/ants/apply_transforms_to_points.yaml → ...pype/ants/apply_transforms_to_points.yaml
diff --git a/...s/apply_transforms_to_points_callables.py → ...s/apply_transforms_to_points_callables.py b/...s/apply_transforms_to_points_callables.py → ...s/apply_transforms_to_points_callables.py
diff --git a/example-specs/task/nipype/ants/atropos.yaml → ...-specs/interface/nipype/ants/atropos.yaml b/example-specs/task/nipype/ants/atropos.yaml → ...-specs/interface/nipype/ants/atropos.yaml
diff --git a/...ecs/task/nipype/ants/atropos_callables.py → ...nterface/nipype/ants/atropos_callables.py b/...ecs/task/nipype/ants/atropos_callables.py → ...nterface/nipype/ants/atropos_callables.py
diff --git a/...nipype/ants/average_affine_transform.yaml → ...nipype/ants/average_affine_transform.yaml b/...nipype/ants/average_affine_transform.yaml → ...nipype/ants/average_affine_transform.yaml
diff --git a/...nts/average_affine_transform_callables.py → ...nts/average_affine_transform_callables.py b/...nts/average_affine_transform_callables.py → ...nts/average_affine_transform_callables.py
diff --git a/...pecs/task/nipype/ants/average_images.yaml → ...interface/nipype/ants/average_images.yaml b/...pecs/task/nipype/ants/average_images.yaml → ...interface/nipype/ants/average_images.yaml
diff --git a/...k/nipype/ants/average_images_callables.py → ...e/nipype/ants/average_images_callables.py b/...k/nipype/ants/average_images_callables.py → ...e/nipype/ants/average_images_callables.py
diff --git a/...cs/task/nipype/ants/brain_extraction.yaml → ...terface/nipype/ants/brain_extraction.yaml b/...cs/task/nipype/ants/brain_extraction.yaml → ...terface/nipype/ants/brain_extraction.yaml
diff --git a/...nipype/ants/brain_extraction_callables.py → ...nipype/ants/brain_extraction_callables.py b/...nipype/ants/brain_extraction_callables.py → ...nipype/ants/brain_extraction_callables.py
diff --git a/...sk/nipype/ants/buildtemplateparallel.yaml → ...ce/nipype/ants/buildtemplateparallel.yaml b/...sk/nipype/ants/buildtemplateparallel.yaml → ...ce/nipype/ants/buildtemplateparallel.yaml
diff --git a/...e/ants/buildtemplateparallel_callables.py → ...e/ants/buildtemplateparallel_callables.py b/...e/ants/buildtemplateparallel_callables.py → ...e/ants/buildtemplateparallel_callables.py
diff --git a/.../nipype/ants/compose_multi_transform.yaml → .../nipype/ants/compose_multi_transform.yaml b/.../nipype/ants/compose_multi_transform.yaml → .../nipype/ants/compose_multi_transform.yaml
diff --git a/...ants/compose_multi_transform_callables.py → ...ants/compose_multi_transform_callables.py b/...ants/compose_multi_transform_callables.py → ...ants/compose_multi_transform_callables.py
diff --git a/...nipype/ants/composite_transform_util.yaml → ...nipype/ants/composite_transform_util.yaml b/...nipype/ants/composite_transform_util.yaml → ...nipype/ants/composite_transform_util.yaml
diff --git a/...nts/composite_transform_util_callables.py → ...nts/composite_transform_util_callables.py b/...nts/composite_transform_util_callables.py → ...nts/composite_transform_util_callables.py
diff --git a/...ype/ants/convert_scalar_image_to_rgb.yaml → ...ype/ants/convert_scalar_image_to_rgb.yaml b/...ype/ants/convert_scalar_image_to_rgb.yaml → ...ype/ants/convert_scalar_image_to_rgb.yaml
diff --git a/.../convert_scalar_image_to_rgb_callables.py → .../convert_scalar_image_to_rgb_callables.py b/.../convert_scalar_image_to_rgb_callables.py → .../convert_scalar_image_to_rgb_callables.py
diff --git a/.../task/nipype/ants/cortical_thickness.yaml → ...rface/nipype/ants/cortical_thickness.yaml b/.../task/nipype/ants/cortical_thickness.yaml → ...rface/nipype/ants/cortical_thickness.yaml
diff --git a/...pype/ants/cortical_thickness_callables.py → ...pype/ants/cortical_thickness_callables.py b/...pype/ants/cortical_thickness_callables.py → ...pype/ants/cortical_thickness_callables.py
diff --git a/...ts/create_jacobian_determinant_image.yaml → ...ts/create_jacobian_determinant_image.yaml b/...ts/create_jacobian_determinant_image.yaml → ...ts/create_jacobian_determinant_image.yaml
diff --git a/...e_jacobian_determinant_image_callables.py → ...e_jacobian_determinant_image_callables.py b/...e_jacobian_determinant_image_callables.py → ...e_jacobian_determinant_image_callables.py
diff --git a/...task/nipype/ants/create_tiled_mosaic.yaml → ...face/nipype/ants/create_tiled_mosaic.yaml b/...task/nipype/ants/create_tiled_mosaic.yaml → ...face/nipype/ants/create_tiled_mosaic.yaml
diff --git a/...ype/ants/create_tiled_mosaic_callables.py → ...ype/ants/create_tiled_mosaic_callables.py b/...ype/ants/create_tiled_mosaic_callables.py → ...ype/ants/create_tiled_mosaic_callables.py
diff --git a/...specs/task/nipype/ants/denoise_image.yaml → .../interface/nipype/ants/denoise_image.yaml b/...specs/task/nipype/ants/denoise_image.yaml → .../interface/nipype/ants/denoise_image.yaml
diff --git a/...sk/nipype/ants/denoise_image_callables.py → ...ce/nipype/ants/denoise_image_callables.py b/...sk/nipype/ants/denoise_image_callables.py → ...ce/nipype/ants/denoise_image_callables.py
diff --git a/...ecs/task/nipype/ants/gen_warp_fields.yaml → ...nterface/nipype/ants/gen_warp_fields.yaml b/...ecs/task/nipype/ants/gen_warp_fields.yaml → ...nterface/nipype/ants/gen_warp_fields.yaml
diff --git a/.../nipype/ants/gen_warp_fields_callables.py → .../nipype/ants/gen_warp_fields_callables.py b/.../nipype/ants/gen_warp_fields_callables.py → .../nipype/ants/gen_warp_fields_callables.py
diff --git a/...le-specs/task/nipype/ants/image_math.yaml → ...ecs/interface/nipype/ants/image_math.yaml b/...le-specs/task/nipype/ants/image_math.yaml → ...ecs/interface/nipype/ants/image_math.yaml
diff --git a/.../task/nipype/ants/image_math_callables.py → ...rface/nipype/ants/image_math_callables.py b/.../task/nipype/ants/image_math_callables.py → ...rface/nipype/ants/image_math_callables.py
diff --git a/...-specs/task/nipype/ants/joint_fusion.yaml → ...s/interface/nipype/ants/joint_fusion.yaml b/...-specs/task/nipype/ants/joint_fusion.yaml → ...s/interface/nipype/ants/joint_fusion.yaml
diff --git a/...ask/nipype/ants/joint_fusion_callables.py → ...ace/nipype/ants/joint_fusion_callables.py b/...ask/nipype/ants/joint_fusion_callables.py → ...ace/nipype/ants/joint_fusion_callables.py
diff --git a/...pecs/task/nipype/ants/kelly_kapowski.yaml → ...interface/nipype/ants/kelly_kapowski.yaml b/...pecs/task/nipype/ants/kelly_kapowski.yaml → ...interface/nipype/ants/kelly_kapowski.yaml
diff --git a/...k/nipype/ants/kelly_kapowski_callables.py → ...e/nipype/ants/kelly_kapowski_callables.py b/...k/nipype/ants/kelly_kapowski_callables.py → ...e/nipype/ants/kelly_kapowski_callables.py
diff --git a/...pecs/task/nipype/ants/label_geometry.yaml → ...interface/nipype/ants/label_geometry.yaml b/...pecs/task/nipype/ants/label_geometry.yaml → ...interface/nipype/ants/label_geometry.yaml
diff --git a/...k/nipype/ants/label_geometry_callables.py → ...e/nipype/ants/label_geometry_callables.py b/...k/nipype/ants/label_geometry_callables.py → ...e/nipype/ants/label_geometry_callables.py
diff --git a/...task/nipype/ants/laplacian_thickness.yaml → ...face/nipype/ants/laplacian_thickness.yaml b/...task/nipype/ants/laplacian_thickness.yaml → ...face/nipype/ants/laplacian_thickness.yaml
diff --git a/...ype/ants/laplacian_thickness_callables.py → ...ype/ants/laplacian_thickness_callables.py b/...ype/ants/laplacian_thickness_callables.py → ...ype/ants/laplacian_thickness_callables.py
diff --git a/...nipype/ants/measure_image_similarity.yaml → ...nipype/ants/measure_image_similarity.yaml b/...nipype/ants/measure_image_similarity.yaml → ...nipype/ants/measure_image_similarity.yaml
diff --git a/...nts/measure_image_similarity_callables.py → ...nts/measure_image_similarity_callables.py b/...nts/measure_image_similarity_callables.py → ...nts/measure_image_similarity_callables.py
diff --git a/...ecs/task/nipype/ants/multiply_images.yaml → ...nterface/nipype/ants/multiply_images.yaml b/...ecs/task/nipype/ants/multiply_images.yaml → ...nterface/nipype/ants/multiply_images.yaml
diff --git a/.../nipype/ants/multiply_images_callables.py → .../nipype/ants/multiply_images_callables.py b/.../nipype/ants/multiply_images_callables.py → .../nipype/ants/multiply_images_callables.py
diff --git a/...nipype/ants/n4_bias_field_correction.yaml → ...nipype/ants/n4_bias_field_correction.yaml b/...nipype/ants/n4_bias_field_correction.yaml → ...nipype/ants/n4_bias_field_correction.yaml
diff --git a/...nts/n4_bias_field_correction_callables.py → ...nts/n4_bias_field_correction_callables.py b/...nts/n4_bias_field_correction_callables.py → ...nts/n4_bias_field_correction_callables.py
diff --git a/...-specs/task/nipype/ants/registration.yaml → ...s/interface/nipype/ants/registration.yaml b/...-specs/task/nipype/ants/registration.yaml → ...s/interface/nipype/ants/registration.yaml
diff --git a/...ask/nipype/ants/registration_callables.py → ...ace/nipype/ants/registration_callables.py b/...ask/nipype/ants/registration_callables.py → ...ace/nipype/ants/registration_callables.py
diff --git a/...k/nipype/ants/registration_syn_quick.yaml → ...e/nipype/ants/registration_syn_quick.yaml b/...k/nipype/ants/registration_syn_quick.yaml → ...e/nipype/ants/registration_syn_quick.yaml
diff --git a/.../ants/registration_syn_quick_callables.py → .../ants/registration_syn_quick_callables.py b/.../ants/registration_syn_quick_callables.py → .../ants/registration_syn_quick_callables.py
diff --git a/...ipype/ants/resample_image_by_spacing.yaml → ...ipype/ants/resample_image_by_spacing.yaml b/...ipype/ants/resample_image_by_spacing.yaml → ...ipype/ants/resample_image_by_spacing.yaml
diff --git a/...ts/resample_image_by_spacing_callables.py → ...ts/resample_image_by_spacing_callables.py b/...ts/resample_image_by_spacing_callables.py → ...ts/resample_image_by_spacing_callables.py
diff --git a/...ecs/task/nipype/ants/threshold_image.yaml → ...nterface/nipype/ants/threshold_image.yaml b/...ecs/task/nipype/ants/threshold_image.yaml → ...nterface/nipype/ants/threshold_image.yaml
diff --git a/.../nipype/ants/threshold_image_callables.py → .../nipype/ants/threshold_image_callables.py b/.../nipype/ants/threshold_image_callables.py → .../nipype/ants/threshold_image_callables.py
diff --git a/...pype/ants/warp_image_multi_transform.yaml → ...pype/ants/warp_image_multi_transform.yaml b/...pype/ants/warp_image_multi_transform.yaml → ...pype/ants/warp_image_multi_transform.yaml
diff --git a/...s/warp_image_multi_transform_callables.py → ...s/warp_image_multi_transform_callables.py b/...s/warp_image_multi_transform_callables.py → ...s/warp_image_multi_transform_callables.py
diff --git a/...rp_time_series_image_multi_transform.yaml → ...rp_time_series_image_multi_transform.yaml b/...rp_time_series_image_multi_transform.yaml → ...rp_time_series_image_multi_transform.yaml
diff --git a/...series_image_multi_transform_callables.py → ...series_image_multi_transform_callables.py b/...series_image_multi_transform_callables.py → ...series_image_multi_transform_callables.py
diff --git a/...pype/freesurfer/add_x_form_to_header.yaml → ...pype/freesurfer/add_x_form_to_header.yaml b/...pype/freesurfer/add_x_form_to_header.yaml → ...pype/freesurfer/add_x_form_to_header.yaml
diff --git a/...esurfer/add_x_form_to_header_callables.py → ...esurfer/add_x_form_to_header_callables.py b/...esurfer/add_x_form_to_header_callables.py → ...esurfer/add_x_form_to_header_callables.py
diff --git a/.../task/nipype/freesurfer/aparc_2_aseg.yaml → ...rface/nipype/freesurfer/aparc_2_aseg.yaml b/.../task/nipype/freesurfer/aparc_2_aseg.yaml → ...rface/nipype/freesurfer/aparc_2_aseg.yaml
diff --git a/...pype/freesurfer/aparc_2_aseg_callables.py → ...pype/freesurfer/aparc_2_aseg_callables.py b/...pype/freesurfer/aparc_2_aseg_callables.py → ...pype/freesurfer/aparc_2_aseg_callables.py
diff --git a/...s/task/nipype/freesurfer/apas_2_aseg.yaml → ...erface/nipype/freesurfer/apas_2_aseg.yaml b/...s/task/nipype/freesurfer/apas_2_aseg.yaml → ...erface/nipype/freesurfer/apas_2_aseg.yaml
diff --git a/...ipype/freesurfer/apas_2_aseg_callables.py → ...ipype/freesurfer/apas_2_aseg_callables.py b/...ipype/freesurfer/apas_2_aseg_callables.py → ...ipype/freesurfer/apas_2_aseg_callables.py
diff --git a/...cs/task/nipype/freesurfer/apply_mask.yaml → ...terface/nipype/freesurfer/apply_mask.yaml b/...cs/task/nipype/freesurfer/apply_mask.yaml → ...terface/nipype/freesurfer/apply_mask.yaml
diff --git a/...nipype/freesurfer/apply_mask_callables.py → ...nipype/freesurfer/apply_mask_callables.py b/...nipype/freesurfer/apply_mask_callables.py → ...nipype/freesurfer/apply_mask_callables.py
diff --git a/...ipype/freesurfer/apply_vol_transform.yaml → ...ipype/freesurfer/apply_vol_transform.yaml b/...ipype/freesurfer/apply_vol_transform.yaml → ...ipype/freesurfer/apply_vol_transform.yaml
diff --git a/...eesurfer/apply_vol_transform_callables.py → ...eesurfer/apply_vol_transform_callables.py b/...eesurfer/apply_vol_transform_callables.py → ...eesurfer/apply_vol_transform_callables.py
diff --git a/...s/task/nipype/freesurfer/bb_register.yaml → ...erface/nipype/freesurfer/bb_register.yaml b/...s/task/nipype/freesurfer/bb_register.yaml → ...erface/nipype/freesurfer/bb_register.yaml
diff --git a/...ipype/freesurfer/bb_register_callables.py → ...ipype/freesurfer/bb_register_callables.py b/...ipype/freesurfer/bb_register_callables.py → ...ipype/freesurfer/bb_register_callables.py
diff --git a/...pecs/task/nipype/freesurfer/binarize.yaml → ...interface/nipype/freesurfer/binarize.yaml b/...pecs/task/nipype/freesurfer/binarize.yaml → ...interface/nipype/freesurfer/binarize.yaml
diff --git a/...k/nipype/freesurfer/binarize_callables.py → ...e/nipype/freesurfer/binarize_callables.py b/...k/nipype/freesurfer/binarize_callables.py → ...e/nipype/freesurfer/binarize_callables.py
diff --git a/...pecs/task/nipype/freesurfer/ca_label.yaml → ...interface/nipype/freesurfer/ca_label.yaml b/...pecs/task/nipype/freesurfer/ca_label.yaml → ...interface/nipype/freesurfer/ca_label.yaml
diff --git a/...k/nipype/freesurfer/ca_label_callables.py → ...e/nipype/freesurfer/ca_label_callables.py b/...k/nipype/freesurfer/ca_label_callables.py → ...e/nipype/freesurfer/ca_label_callables.py
diff --git a/.../task/nipype/freesurfer/ca_normalize.yaml → ...rface/nipype/freesurfer/ca_normalize.yaml b/.../task/nipype/freesurfer/ca_normalize.yaml → ...rface/nipype/freesurfer/ca_normalize.yaml
diff --git a/...pype/freesurfer/ca_normalize_callables.py → ...pype/freesurfer/ca_normalize_callables.py b/...pype/freesurfer/ca_normalize_callables.py → ...pype/freesurfer/ca_normalize_callables.py
diff --git a/...s/task/nipype/freesurfer/ca_register.yaml → ...erface/nipype/freesurfer/ca_register.yaml b/...s/task/nipype/freesurfer/ca_register.yaml → ...erface/nipype/freesurfer/ca_register.yaml
diff --git a/...ipype/freesurfer/ca_register_callables.py → ...ipype/freesurfer/ca_register_callables.py b/...ipype/freesurfer/ca_register_callables.py → ...ipype/freesurfer/ca_register_callables.py
diff --git a/...freesurfer/check_talairach_alignment.yaml → ...freesurfer/check_talairach_alignment.yaml b/...freesurfer/check_talairach_alignment.yaml → ...freesurfer/check_talairach_alignment.yaml
diff --git a/...er/check_talairach_alignment_callables.py → ...er/check_talairach_alignment_callables.py b/...er/check_talairach_alignment_callables.py → ...er/check_talairach_alignment_callables.py
diff --git a/...s/task/nipype/freesurfer/concatenate.yaml → ...erface/nipype/freesurfer/concatenate.yaml b/...s/task/nipype/freesurfer/concatenate.yaml → ...erface/nipype/freesurfer/concatenate.yaml
diff --git a/...ipype/freesurfer/concatenate_callables.py → ...ipype/freesurfer/concatenate_callables.py b/...ipype/freesurfer/concatenate_callables.py → ...ipype/freesurfer/concatenate_callables.py
diff --git a/...sk/nipype/freesurfer/concatenate_lta.yaml → ...ce/nipype/freesurfer/concatenate_lta.yaml b/...sk/nipype/freesurfer/concatenate_lta.yaml → ...ce/nipype/freesurfer/concatenate_lta.yaml
diff --git a/...e/freesurfer/concatenate_lta_callables.py → ...e/freesurfer/concatenate_lta_callables.py b/...e/freesurfer/concatenate_lta_callables.py → ...e/freesurfer/concatenate_lta_callables.py
diff --git a/...pecs/task/nipype/freesurfer/contrast.yaml → ...interface/nipype/freesurfer/contrast.yaml b/...pecs/task/nipype/freesurfer/contrast.yaml → ...interface/nipype/freesurfer/contrast.yaml
diff --git a/...k/nipype/freesurfer/contrast_callables.py → ...e/nipype/freesurfer/contrast_callables.py b/...k/nipype/freesurfer/contrast_callables.py → ...e/nipype/freesurfer/contrast_callables.py
diff --git a/...ecs/task/nipype/freesurfer/curvature.yaml → ...nterface/nipype/freesurfer/curvature.yaml b/...ecs/task/nipype/freesurfer/curvature.yaml → ...nterface/nipype/freesurfer/curvature.yaml
diff --git a/.../nipype/freesurfer/curvature_callables.py → .../nipype/freesurfer/curvature_callables.py b/.../nipype/freesurfer/curvature_callables.py → .../nipype/freesurfer/curvature_callables.py
diff --git a/...sk/nipype/freesurfer/curvature_stats.yaml → ...ce/nipype/freesurfer/curvature_stats.yaml b/...sk/nipype/freesurfer/curvature_stats.yaml → ...ce/nipype/freesurfer/curvature_stats.yaml
diff --git a/...e/freesurfer/curvature_stats_callables.py → ...e/freesurfer/curvature_stats_callables.py b/...e/freesurfer/curvature_stats_callables.py → ...e/freesurfer/curvature_stats_callables.py
diff --git a/...task/nipype/freesurfer/dicom_convert.yaml → ...face/nipype/freesurfer/dicom_convert.yaml b/...task/nipype/freesurfer/dicom_convert.yaml → ...face/nipype/freesurfer/dicom_convert.yaml
diff --git a/...ype/freesurfer/dicom_convert_callables.py → ...ype/freesurfer/dicom_convert_callables.py b/...ype/freesurfer/dicom_convert_callables.py → ...ype/freesurfer/dicom_convert_callables.py
diff --git a/.../nipype/freesurfer/edit_w_mwith_aseg.yaml → .../nipype/freesurfer/edit_w_mwith_aseg.yaml b/.../nipype/freesurfer/edit_w_mwith_aseg.yaml → .../nipype/freesurfer/edit_w_mwith_aseg.yaml
diff --git a/...freesurfer/edit_w_mwith_aseg_callables.py → ...freesurfer/edit_w_mwith_aseg_callables.py b/...freesurfer/edit_w_mwith_aseg_callables.py → ...freesurfer/edit_w_mwith_aseg_callables.py
diff --git a/...s/task/nipype/freesurfer/em_register.yaml → ...erface/nipype/freesurfer/em_register.yaml b/...s/task/nipype/freesurfer/em_register.yaml → ...erface/nipype/freesurfer/em_register.yaml
diff --git a/...ipype/freesurfer/em_register_callables.py → ...ipype/freesurfer/em_register_callables.py b/...ipype/freesurfer/em_register_callables.py → ...ipype/freesurfer/em_register_callables.py
diff --git a/.../task/nipype/freesurfer/euler_number.yaml → ...rface/nipype/freesurfer/euler_number.yaml b/.../task/nipype/freesurfer/euler_number.yaml → ...rface/nipype/freesurfer/euler_number.yaml
diff --git a/...pype/freesurfer/euler_number_callables.py → ...pype/freesurfer/euler_number_callables.py b/...pype/freesurfer/euler_number_callables.py → ...pype/freesurfer/euler_number_callables.py
diff --git a/...pe/freesurfer/extract_main_component.yaml → ...pe/freesurfer/extract_main_component.yaml b/...pe/freesurfer/extract_main_component.yaml → ...pe/freesurfer/extract_main_component.yaml
diff --git a/...urfer/extract_main_component_callables.py → ...urfer/extract_main_component_callables.py b/...urfer/extract_main_component_callables.py → ...urfer/extract_main_component_callables.py
diff --git a/...task/nipype/freesurfer/fit_ms_params.yaml → ...face/nipype/freesurfer/fit_ms_params.yaml b/...task/nipype/freesurfer/fit_ms_params.yaml → ...face/nipype/freesurfer/fit_ms_params.yaml
diff --git a/...ype/freesurfer/fit_ms_params_callables.py → ...ype/freesurfer/fit_ms_params_callables.py b/...ype/freesurfer/fit_ms_params_callables.py → ...ype/freesurfer/fit_ms_params_callables.py
diff --git a/.../task/nipype/freesurfer/fix_topology.yaml → ...rface/nipype/freesurfer/fix_topology.yaml b/.../task/nipype/freesurfer/fix_topology.yaml → ...rface/nipype/freesurfer/fix_topology.yaml
diff --git a/...pype/freesurfer/fix_topology_callables.py → ...pype/freesurfer/fix_topology_callables.py b/...pype/freesurfer/fix_topology_callables.py → ...pype/freesurfer/fix_topology_callables.py
diff --git a/...nipype/freesurfer/fuse_segmentations.yaml → ...nipype/freesurfer/fuse_segmentations.yaml b/...nipype/freesurfer/fuse_segmentations.yaml → ...nipype/freesurfer/fuse_segmentations.yaml
diff --git a/...reesurfer/fuse_segmentations_callables.py → ...reesurfer/fuse_segmentations_callables.py b/...reesurfer/fuse_segmentations_callables.py → ...reesurfer/fuse_segmentations_callables.py
diff --git a/...specs/task/nipype/freesurfer/glm_fit.yaml → .../interface/nipype/freesurfer/glm_fit.yaml b/...specs/task/nipype/freesurfer/glm_fit.yaml → .../interface/nipype/freesurfer/glm_fit.yaml
diff --git a/...sk/nipype/freesurfer/glm_fit_callables.py → ...ce/nipype/freesurfer/glm_fit_callables.py b/...sk/nipype/freesurfer/glm_fit_callables.py → ...ce/nipype/freesurfer/glm_fit_callables.py
diff --git a/...specs/task/nipype/freesurfer/gtm_seg.yaml → .../interface/nipype/freesurfer/gtm_seg.yaml b/...specs/task/nipype/freesurfer/gtm_seg.yaml → .../interface/nipype/freesurfer/gtm_seg.yaml
diff --git a/...sk/nipype/freesurfer/gtm_seg_callables.py → ...ce/nipype/freesurfer/gtm_seg_callables.py b/...sk/nipype/freesurfer/gtm_seg_callables.py → ...ce/nipype/freesurfer/gtm_seg_callables.py
diff --git a/...-specs/task/nipype/freesurfer/gtmpvc.yaml → ...s/interface/nipype/freesurfer/gtmpvc.yaml b/...-specs/task/nipype/freesurfer/gtmpvc.yaml → ...s/interface/nipype/freesurfer/gtmpvc.yaml
diff --git a/...ask/nipype/freesurfer/gtmpvc_callables.py → ...ace/nipype/freesurfer/gtmpvc_callables.py b/...ask/nipype/freesurfer/gtmpvc_callables.py → ...ace/nipype/freesurfer/gtmpvc_callables.py
diff --git a/...cs/task/nipype/freesurfer/image_info.yaml → ...terface/nipype/freesurfer/image_info.yaml b/...cs/task/nipype/freesurfer/image_info.yaml → ...terface/nipype/freesurfer/image_info.yaml
diff --git a/...nipype/freesurfer/image_info_callables.py → ...nipype/freesurfer/image_info_callables.py b/...nipype/freesurfer/image_info_callables.py → ...nipype/freesurfer/image_info_callables.py
diff --git a/...pecs/task/nipype/freesurfer/jacobian.yaml → ...interface/nipype/freesurfer/jacobian.yaml b/...pecs/task/nipype/freesurfer/jacobian.yaml → ...interface/nipype/freesurfer/jacobian.yaml
diff --git a/...k/nipype/freesurfer/jacobian_callables.py → ...e/nipype/freesurfer/jacobian_callables.py b/...k/nipype/freesurfer/jacobian_callables.py → ...e/nipype/freesurfer/jacobian_callables.py
diff --git a/...task/nipype/freesurfer/label_2_annot.yaml → ...face/nipype/freesurfer/label_2_annot.yaml b/...task/nipype/freesurfer/label_2_annot.yaml → ...face/nipype/freesurfer/label_2_annot.yaml
diff --git a/...ype/freesurfer/label_2_annot_callables.py → ...ype/freesurfer/label_2_annot_callables.py b/...ype/freesurfer/label_2_annot_callables.py → ...ype/freesurfer/label_2_annot_callables.py
diff --git a/...task/nipype/freesurfer/label_2_label.yaml → ...face/nipype/freesurfer/label_2_label.yaml b/...task/nipype/freesurfer/label_2_label.yaml → ...face/nipype/freesurfer/label_2_label.yaml
diff --git a/...ype/freesurfer/label_2_label_callables.py → ...ype/freesurfer/label_2_label_callables.py b/...ype/freesurfer/label_2_label_callables.py → ...ype/freesurfer/label_2_label_callables.py
diff --git a/...s/task/nipype/freesurfer/label_2_vol.yaml → ...erface/nipype/freesurfer/label_2_vol.yaml b/...s/task/nipype/freesurfer/label_2_vol.yaml → ...erface/nipype/freesurfer/label_2_vol.yaml
diff --git a/...ipype/freesurfer/label_2_vol_callables.py → ...ipype/freesurfer/label_2_vol_callables.py b/...ipype/freesurfer/label_2_vol_callables.py → ...ipype/freesurfer/label_2_vol_callables.py
diff --git a/...ecs/task/nipype/freesurfer/logan_ref.yaml → ...nterface/nipype/freesurfer/logan_ref.yaml b/...ecs/task/nipype/freesurfer/logan_ref.yaml → ...nterface/nipype/freesurfer/logan_ref.yaml
diff --git a/.../nipype/freesurfer/logan_ref_callables.py → .../nipype/freesurfer/logan_ref_callables.py b/.../nipype/freesurfer/logan_ref_callables.py → .../nipype/freesurfer/logan_ref_callables.py
diff --git a/...s/task/nipype/freesurfer/lta_convert.yaml → ...erface/nipype/freesurfer/lta_convert.yaml b/...s/task/nipype/freesurfer/lta_convert.yaml → ...erface/nipype/freesurfer/lta_convert.yaml