build: fix dependencies versions

We need to lock the versions of the Ontoma dependencies to make sure that the module runs as expected. ## Background There is a problem with `pronto`s version that is not able to load the EFO slim OWLs. I've tried with versions 3.64 to 3.68, returning the same error: `ValueError: undeclared synonym type: http://purl.obolibrary.org/obo/mondo#ABBREVIATION` This is not a problem when we run the evidence source parsers because the pronto version is fixed to `2.53.3`. However, if you pip install ontoma outside of this environment, pronto 2.7 will be installed and then the loading of the slim file will fail. This PR addresses the problem so that ontoma works out of the box.
opentargets · Jul 31, 2024 · a1e63e4 · a1e63e4
1 parent 769bf8a
commit a1e63e4
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/setup.py b/setup.py
@@ -40,11 +40,11 @@ def run(self):
     ],
     keywords='opentargets ontology efo mapper',
     install_requires=[
-        'click',
-        'pandas',
-        'pronto',
-        'requests',
-        'retry2',
+        'click==8.1.7',
+        'pandas==2.2.2',
+        'pronto==2.5.3',
+        'requests==2.32.0',
+        'retry2==0.9.5',
     ],
     entry_points='''
         [console_scripts]