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@plantinformatics

Plant Informatics (Agriculture Victoria)

Genomics Data team at Agriculture Victoria

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  1. pretzel pretzel Public

    Javascript full-stack framework for Big Data visualisation and analysis

    JavaScript 43 13

  2. shortbread2 shortbread2 Public

    Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.

    Perl 1

  3. pretzel-data pretzel-data Public

    Data structure for https://github.com/plantinformatics/pretzel

    2

  4. pretzel-application-note pretzel-application-note Public

    A repository for an application note about pretzel

    TeX

  5. pretzel-input-generator pretzel-input-generator Public

    Nextflow

  6. pretzel-user-guide-old pretzel-user-guide-old Public

    Pretzel User Guide

Repositories

Showing 10 of 26 repositories
  • pretzel Public

    Javascript full-stack framework for Big Data visualisation and analysis

    plantinformatics/pretzel’s past year of commit activity
    JavaScript 43 GPL-3.0 13 137 8 Updated Apr 8, 2025
  • lamington Public
    plantinformatics/lamington’s past year of commit activity
    R 0 GPL-3.0 0 2 0 Updated Apr 7, 2025
  • pretzel-documentation-website Public
    plantinformatics/pretzel-documentation-website’s past year of commit activity
    Shell 0 1 2 2 Updated Apr 3, 2025
  • genolink Public

    Genolink is a middleware for integrating genotype databases and Genesys, reducing data redundancy, and enabling real-time data access and filtering across genomic platforms.

    plantinformatics/genolink’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Mar 28, 2025
  • strategic-partnership-website Public
    plantinformatics/strategic-partnership-website’s past year of commit activity
    0 0 0 0 Updated Mar 20, 2025
  • pretzel-data Public

    Data structure for https://github.com/plantinformatics/pretzel

    plantinformatics/pretzel-data’s past year of commit activity
    0 GPL-3.0 2 2 0 Updated Mar 16, 2025
  • vcf-genotype-brapi Public

    Client and server functions to access genotype data from VCF via a custom web API and BrAPI

    plantinformatics/vcf-genotype-brapi’s past year of commit activity
    JavaScript 0 0 0 0 Updated Feb 26, 2025
  • child-process-progressive Public

    Wrap node child_process, implementing a progressive option for multiple data chunks sent via SSE.

    plantinformatics/child-process-progressive’s past year of commit activity
    JavaScript 0 0 0 0 Updated Feb 24, 2025
  • shortbread2 Public

    Shortbread2 is a bioinformatics pipeline for identifying single nucleotide polymorphisms (SNPs) and insertions/deletions (indels) from High-Throughput Next Generation Sequencing (NGS) data.

    plantinformatics/shortbread2’s past year of commit activity
    Perl 1 0 0 0 Updated Jan 24, 2025
  • germinate-brapi Public Forked from germinateplatform/germinate-brapi

    BrAPI implementation for Germinate

    plantinformatics/germinate-brapi’s past year of commit activity
    Java 0 Apache-2.0 2 0 0 Updated Jan 22, 2025
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