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QuaDBio Lab

Quantitative Developmental Biology Lab

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  1. scRNAseq_analysis_vignette scRNAseq_analysis_vignette Public

    Tutorial for scRNA-seq data analysis beginners using R

    174 60

  2. Pando Pando Public

    Multiome GRN inference.

    R 119 21

  3. scMultiome_analysis_vignette scMultiome_analysis_vignette Public

    Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

    54 14

  4. VoxHunt VoxHunt Public

    VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps

    HTML 44 5

  5. primate_cerebral_organoids primate_cerebral_organoids Public

    Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain development" (https://www.nature.com/articles/s41586-019-1654-9)

    R 34 4

  6. simspec simspec Public

    Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)

    R 31 3

Repositories

Showing 10 of 25 repositories
  • sopa Public Forked from gustaveroussy/sopa

    Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells

    quadbio/sopa’s past year of commit activity
    Python 0 BSD-3-Clause 24 0 0 Updated Feb 21, 2025
  • spatialdata-plot Public Forked from scverse/spatialdata-plot

    Static plotting for spatialdata

    quadbio/spatialdata-plot’s past year of commit activity
    Python 0 BSD-3-Clause 16 0 0 Updated Feb 21, 2025
  • morphodynamics_human_brain_organoid Public
    quadbio/morphodynamics_human_brain_organoid’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Feb 19, 2025
  • cell-annotator Public

    Automatically annotate cell types, consistently across samples.

    quadbio/cell-annotator’s past year of commit activity
    Python 1 MIT 0 3 0 Updated Feb 14, 2025
  • amex_merfish_spaceolotl Public
    quadbio/amex_merfish_spaceolotl’s past year of commit activity
    Python 0 0 0 0 Updated Jan 6, 2025
  • analysis_template Public template

    Simple template repo for single-cell/spatial analysis

    quadbio/analysis_template’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Nov 10, 2024
  • RNAseq_tutorial Public
    quadbio/RNAseq_tutorial’s past year of commit activity
    22 8 0 0 Updated Oct 16, 2024
  • moscot Public Forked from theislab/moscot

    Multi-omic single-cell optimal transport tools

    quadbio/moscot’s past year of commit activity
    Python 0 BSD-3-Clause 9 0 0 Updated Jul 26, 2024
  • Tangram Public Forked from broadinstitute/Tangram

    Spatial alignment of single cell transcriptomic data.

    quadbio/Tangram’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 55 0 0 Updated Jul 3, 2024
  • scMultiome_analysis_vignette Public

    Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis

    quadbio/scMultiome_analysis_vignette’s past year of commit activity
    54 14 5 0 Updated Apr 22, 2024
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