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DEP Deprecate 'normalize' in ridge models #17772

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Merged
merged 58 commits into from
Apr 6, 2021
Merged

DEP Deprecate 'normalize' in ridge models #17772

merged 58 commits into from
Apr 6, 2021

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maikia
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@maikia maikia commented Jun 29, 2020

Towards: #3020

It deprecates 'normalize' in _ridge.py:
Ridge
RidgeClassifier
RidgeCV
RidgeClassifierCV

@maikia maikia mentioned this pull request Jul 1, 2020
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@rth rth mentioned this pull request Aug 17, 2020
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Base automatically changed from master to main January 22, 2021 10:52
maikia and others added 21 commits January 22, 2021 15:20
@maikia
merge
486f780
@maikia
Merge branch 'main' of https://github.com/scikit-learn/scikit-learn i…
bc16112 
…nto deprecate_normalize_ridge
@maikia
change deprecate for deprecated
ab113fe
@maikia
use _base._deprecate_normalize for deprecation message
3eaceb3
@maikia
cleanup
7489f7d
@maikia
init test_common.py
85ea259
@maikia
update the test to two parametrize
3559663
@maikia
added ridges to the test
624f203
@maikia
cleanup
f50388a
@maikia
move a test to test_common
716ea57
@maikia
started added tests, not yet running through
e936da9
@maikia
Merge branch 'main' of https://github.com/scikit-learn/scikit-learn i…
652b816 
…nto deprecate_normalize_ridge
@maikia
Merge branch 'main' of https://github.com/scikit-learn/scikit-learn i…
b49e05b 
…nto deprecate_normalize_ridge
@maikia
checkpoint on finding the problem with ridge + sample_weight in a pip…
115794b 
…eline
@maikia
making a new test;
5c8d7ca
@agramfort
bug hunting continues...
1525fe7
@maikia
Merge branch 'main' of https://github.com/scikit-learn/scikit-learn i…
814609e 
…nto deprecate_normalize_ridge
@agramfort
FIX: actually take into account the sample_weights in the X_scale in …
04d09b6 
…linear models... oh well...
@maikia
Merge branch 'deprecate_normalize_ridge' of https://github.com/maikia…
bb8d29f 
…/scikit-learn into deprecate_normalize_ridge
@maikia
merging conflicts
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make the tests to pass
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ogrisel commented Mar 12, 2021 •
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I will not merge personally as I've been involved so I'll let a 3rd reviewer click the green button

Maybe @lorentzenchr could have a look? Not that there are still problems with Ridge(normalize=True) and sample_weight but this is investigated separately in #19616.

@lorentzenchr lorentzenchr self-requested a review March 12, 2021 15:52
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I have just some questions. Otherwise this seems solid.

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There is a merge conflict. Please merge main in order for the merge button to reappear.

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LGTM. I added a small commit for a bit more detail of the FutureWarning for the elastic net. I hope, it's correct.
@maikia Thank you for this PR and your whole work on deprecating normalize in linear models.

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lorentzenchr commented Mar 27, 2021 •
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The test test_enet_ridge_consistency is failing.

@lorentzenchr lorentzenchr dismissed their stale review March 27, 2021 12:52

Failing CI

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tried to merge main to see if this helps....

I cannot replicate locally

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Test test_enet_ridge_consistency is failing due to a FutureWarning from _deprecate_normalize from Ridge.
Maybe filtering the test as is done elsewhere fixes this problem?

# FIXME: 'normalize' to be removed in 1.2
@pytest.mark.filterwarnings("ignore:'normalize' was deprecated")
def test_enet_ridge_consistency

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ogrisel commented Apr 6, 2021

I think you need to pass -Werror to pytest to reproduce the warning to error conversion.

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LGTM

@lorentzenchr lorentzenchr changed the title Deprecate 'normalize' in _ridge models DEP Deprecate 'normalize' in ridge models Apr 6, 2021
@lorentzenchr lorentzenchr merged commit 9cfacf1 into scikit-learn:main Apr 6, 2021
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thx @maikia @lorentzenchr @ogrisel ! we are getting there !!!

thomasjpfan pushed a commit to thomasjpfan/scikit-learn that referenced this pull request Apr 19, 2021
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DEP Deprecate 'normalize' in ridge models (scikit-learn#17772)
98e53dd 
Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org>
Co-authored-by: Alexandre Gramfort <alexandre.gramfort@m4x.org>
@glemaitre glemaitre mentioned this pull request Apr 22, 2021
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@lorentzenchr lorentzenchr mentioned this pull request Jun 18, 2021
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sebp added a commit to sebp/scikit-survival that referenced this pull request Dec 28, 2021
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Fix deprecation warning of normalize parameter of IPCRidge
fcaf5a5 
Deprecated in sklearn:
scikit-learn/scikit-learn#17772
sebp added a commit to sebp/scikit-survival that referenced this pull request Dec 30, 2021
@sebp
Fix deprecation warning of normalize parameter of IPCRidge
1264f3b 
Deprecated in sklearn:
scikit-learn/scikit-learn#17772
sebp added a commit to sebp/scikit-survival that referenced this pull request Dec 30, 2021
@sebp
Fix deprecation warning of normalize parameter of IPCRidge
29c3f53 
Deprecated in sklearn:
scikit-learn/scikit-learn#17772
@thomasjpfan thomasjpfan mentioned this pull request Apr 13, 2022
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@eddiebergman eddiebergman mentioned this pull request Nov 15, 2022
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@ogrisel ogrisel ogrisel approved these changes

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@agramfort agramfort agramfort approved these changes

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