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ENH Adds class_names
to tree.export_text
#25387
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ENH Adds class_names
to tree.export_text
#25387
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sklearn/tree/_export.py
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@@ -943,6 +944,10 @@ def export_text( | |||
A list of length n_features containing the feature names. | |||
If None generic names will be used ("feature_0", "feature_1", ...). | |||
|
|||
class_names : list of arguments, default=None |
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Could this be list of str
instead of list of arguments
? Like the parameter above, feature_names.
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I also wondered about this, but when you print the tree, it is converted directly to a string with the _add_leaf()
function :
scikit-learn/sklearn/tree/_export.py
Lines 1026 to 1034 in dc7ef61
def _add_leaf(value, class_name, indent): | |
val = "" | |
is_classification = isinstance(decision_tree, DecisionTreeClassifier) | |
if show_weights or not is_classification: | |
val = ["{1:.{0}f}, ".format(decimals, v) for v in value] | |
val = "[" + "".join(val)[:-2] + "]" | |
if is_classification: | |
val += " class: " + str(class_name) | |
export_text.report += value_fmt.format(indent, "", val) |
So I figured that any element in the list, of any type, is converted to a string.
class_names
in tree.export_text
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We will need unit tests to check the behaviour of each new options:
- that we delegate to
decision_tree.classes_
when passingNone
- check that we raise warning and create generic numerical string when
"numeric"
is passed - check that we overwrite the class names by passing a list
- check that we raise an error with the wrong number of items in the list
sklearn/tree/_export.py
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@@ -986,7 +991,10 @@ def export_text( | |||
check_is_fitted(decision_tree) | |||
tree_ = decision_tree.tree_ | |||
if is_classifier(decision_tree): | |||
class_names = decision_tree.classes_ | |||
if class_names is not None and len(class_names) == len(decision_tree.classes_): |
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Actually, we are breaking backward compatibility here even if one would like to have sensible default.
So if we want to preserve the previous behaviour and not introduce a limited number of parameters that need to be deprecated later, I would propose the following:
if class_names is "numeric":
class_name = np.argmax(value)
elif class_names is None:
class_name = decision_tree.classes_[np.argmax(value)]
else:
class_name = class_names[np.argmax(value)]
Then, by default, class_names="numeric"
. Once we introduce the parameter, we can deprecate "numeric"
and default to None
.
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Here for the validation, we would have something like:
if class_names == "numeric":
warnings.warn(
"The option `class_names='numeric'` is deprecated in 1.3 and will be removed "
"in 1.5. Set `class_names=None`, the classes as seen by `decision_tree` during "
"`fit` will be used instead.",
FutureWarning,
)
elif class_names is not None and len(class_names) != len(decision_tree.classes_):
raise ValueError(
"When `class_names` is not None, it should be a list containing as many "
f"items as `decision_tree.classes_`. Got {len(class_names)} while the tree "
f"was fitted with {len(decision_tree.classes_)} classes."
)
sklearn/tree/_export.py
Outdated
class_names : list of arguments, default=None | ||
Names of each of the target classes in ascending numerical order. | ||
Only relevant for classification and not supported for multi-output. |
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class_names : list of arguments, default=None | |
Names of each of the target classes in ascending numerical order. | |
Only relevant for classification and not supported for multi-output. | |
class_names : "numeric", list or None, default="numeric" | |
Names of each of the target classes in ascending numerical order. | |
Only relevant for classification and not supported for multi-output. | |
- if `None`, the class names are delegated to `decision_tree.classes_`; | |
- if `"numeric"`, the class names are generic names representing numerical | |
numbers (e.g. `["0", "1", ...]`); | |
- if a list, the number of items should be the same as in | |
`decition_tree.classes_` and will be used. | |
.. versionadded:: 1.3 | |
`class_names` was added in version 1.3. | |
.. deprecated:: 1.3 | |
The `"numeric"` option is deprecated and will be replaced by `None`. Thus, | |
`decision_tree.classes_` will be used by default. |
…arn into export_text_class_names
Thank you for the reviews! So I've made new changes according to what you've written. |
We still need the tests as mentioned in my previous comment. |
Interestingly, it seems that we broke the back compatibility as shown by the failure:
|
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We will also need to have an entry inside the changelog doc/whats_new/v1.3.rst
.
Test: check that we raise an error with the wrong number of items in the list def test_export_text_errors():
clf = DecisionTreeClassifier(max_depth=2, random_state=0)
clf.fit(X, y)
err_msg = "max_depth bust be >= 0, given -1"
with pytest.raises(ValueError, match=err_msg):
export_text(clf, max_depth=-1)
err_msg = "feature_names must contain 2 elements, got 1"
with pytest.raises(ValueError, match=err_msg):
export_text(clf, feature_names=["a"])
err_msg = (
"When `class_names` is not None, it should be a list containing as"
" many items as `decision_tree.classes_`. Got 1 while"
" the tree was fitted with 2 classes."
)
with pytest.raises(ValueError, match=err_msg):
export_text(clf, class_names=["a"])
err_msg = "decimals must be >= 0, given -1"
with pytest.raises(ValueError, match=err_msg):
export_text(clf, decimals=-1)
err_msg = "spacing must be > 0, given 0"
with pytest.raises(ValueError, match=err_msg):
export_text(clf, spacing=0) |
You need to put the test in the associated test file in |
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You need to write a new test to check that we raise a warning when passing "numeric"
.
Also, I would expect now the different tests to raise the warnings. We should modify them to use class_names=None
. However, we should check the behaviour of "numeric"
at the same time that we check that we raise the warning.
I took the liberty of making some changes and tests :
=> So I've decided to re-add the line. And the test above works. class_names = class_names # when class_names is not None and len(class_names) == len(decision_tree.classes_)
class_names = range(decision_tree.n_classes_) |
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Sorry for the misleading review. I tried to make the suggestion to remove the "numeric"
option which is not necessary.
Could you also add an entry in the changelog in doc/whats_new/v1.3.rst
to acknowlege the new parameter. It will be an enhancement.
sklearn/tree/_export.py
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@@ -15,6 +15,7 @@ | |||
from numbers import Integral | |||
|
|||
import numpy as np | |||
import warnings |
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Can you move this import under from numbers import Integral
sklearn/tree/_export.py
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@@ -1042,6 +1080,7 @@ def print_tree_recurse(node, depth): | |||
value = tree_.value[node][0] | |||
else: | |||
value = tree_.value[node].T[0] | |||
|
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You can revert this change.
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If it was not introduced by black
@@ -986,7 +1005,26 @@ def export_text( | |||
check_is_fitted(decision_tree) | |||
tree_ = decision_tree.tree_ | |||
if is_classifier(decision_tree): | |||
class_names = decision_tree.classes_ |
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Uhm it seems that I misunderstood something when reading the documentation at first. We already uses decision_tree.classes_
. So we don't need "numeric"
and any deprecation (which is a good news).
Sorry to have brought this way. We will need to modify (remove) the code :)
sklearn/tree/_export.py
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if class_names == "numeric": | ||
warnings.warn( | ||
"The option `class_names='numeric'` is deprecated in 1.3 and will be" | ||
" removed in 1.5. Set `class_names=None`, the classes as seen by" | ||
" `decision_tree` during `fit` will be used instead.", | ||
FutureWarning, | ||
) | ||
class_names = range(decision_tree.n_classes_) | ||
elif class_names is not None: |
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if class_names == "numeric": | |
warnings.warn( | |
"The option `class_names='numeric'` is deprecated in 1.3 and will be" | |
" removed in 1.5. Set `class_names=None`, the classes as seen by" | |
" `decision_tree` during `fit` will be used instead.", | |
FutureWarning, | |
) | |
class_names = range(decision_tree.n_classes_) | |
elif class_names is not None: | |
if class_names is not None: |
sklearn/tree/_export.py
Outdated
class_names : "numeric", list or None, default="numeric" | ||
Names of each of the target classes in ascending numerical order. | ||
Only relevant for classification and not supported for multi-output. | ||
|
||
- if `None`, the class names are delegated to `decision_tree.classes_`; | ||
- if `"numeric"`, the class names are generic names representing numerical | ||
numbers (e.g. `["0", "1", ...]`); | ||
- if a list, the number of items should be the same as in | ||
`decition_tree.classes_` and will be used. | ||
|
||
.. versionadded:: 1.3 | ||
`class_names` was added in version 1.3. | ||
|
||
.. deprecated:: 1.3 | ||
The `"numeric"` option is deprecated and will be replaced by `None`. Thus, | ||
`decision_tree.classes_` will be used by default. |
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class_names : "numeric", list or None, default="numeric" | |
Names of each of the target classes in ascending numerical order. | |
Only relevant for classification and not supported for multi-output. | |
- if `None`, the class names are delegated to `decision_tree.classes_`; | |
- if `"numeric"`, the class names are generic names representing numerical | |
numbers (e.g. `["0", "1", ...]`); | |
- if a list, the number of items should be the same as in | |
`decition_tree.classes_` and will be used. | |
.. versionadded:: 1.3 | |
`class_names` was added in version 1.3. | |
.. deprecated:: 1.3 | |
The `"numeric"` option is deprecated and will be replaced by `None`. Thus, | |
`decision_tree.classes_` will be used by default. | |
class_names : list, default="numeric" | |
Names of each of the target classes in ascending numerical order. | |
Only relevant for classification and not supported for multi-output. | |
- if `None`, the class names are delegated to `decision_tree.classes_`; | |
- if a list, the number of items should be the same as in | |
`decition_tree.classes_` and will be used. | |
.. versionadded:: 1.3 |
sklearn/tree/_export.py
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class_names="numeric", | ||
max_depth=10, |
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class_names="numeric", | |
max_depth=10, | |
class_names=None, | |
max_depth=10, |
sklearn/tree/tests/test_export.py
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def test_export_text_warnings(): | ||
clf = DecisionTreeClassifier(max_depth=2, random_state=0) | ||
clf.fit(X, y) | ||
warn_msg = ( | ||
"The option `class_names='numeric'` is deprecated in 1.3 and will be" | ||
" removed in 1.5. Set `class_names=None`, the classes as seen by" | ||
" `decision_tree` during `fit` will be used instead." | ||
) | ||
with pytest.warns(FutureWarning, match=warn_msg): | ||
export_text(clf, class_names="numeric") | ||
|
||
|
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def test_export_text_warnings(): | |
clf = DecisionTreeClassifier(max_depth=2, random_state=0) | |
clf.fit(X, y) | |
warn_msg = ( | |
"The option `class_names='numeric'` is deprecated in 1.3 and will be" | |
" removed in 1.5. Set `class_names=None`, the classes as seen by" | |
" `decision_tree` during `fit` will be used instead." | |
) | |
with pytest.warns(FutureWarning, match=warn_msg): | |
export_text(clf, class_names="numeric") |
We don't need this test anymore.
sklearn/tree/tests/test_export.py
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assert export_text(clf, class_names=None, max_depth=0) == expected_report | ||
# testing that the rest of the tree is truncated | ||
assert export_text(clf, max_depth=10) == expected_report | ||
assert export_text(clf, class_names=None, max_depth=10) == expected_report |
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assert export_text(clf, class_names=None, max_depth=0) == expected_report | |
# testing that the rest of the tree is truncated | |
assert export_text(clf, max_depth=10) == expected_report | |
assert export_text(clf, class_names=None, max_depth=10) == expected_report | |
assert export_text(clf, max_depth=0) == expected_report | |
# testing that the rest of the tree is truncated | |
assert export_text(clf, max_depth=10) == expected_report |
Basically, it is this test that indicated me that we were doing wrong since class_names=None
seems to be the previous behaviour.
sklearn/tree/tests/test_export.py
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|
||
expected_report = dedent( | ||
""" | ||
|--- feature_1 <= 0.00 | ||
| |--- class: 0 | ||
|--- feature_1 > 0.00 | ||
| |--- class: 1 | ||
""" | ||
).lstrip() | ||
assert export_text(clf, class_names="numeric") == expected_report |
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expected_report = dedent( | |
""" | |
|--- feature_1 <= 0.00 | |
| |--- class: 0 | |
|--- feature_1 > 0.00 | |
| |--- class: 1 | |
""" | |
).lstrip() | |
assert export_text(clf, class_names="numeric") == expected_report |
We don't need this case anymore.
sklearn/tree/tests/test_export.py
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@@ -392,7 +421,29 @@ def test_export_text(): | |||
| |--- class: 1 | |||
""" | |||
).lstrip() | |||
assert export_text(clf, feature_names=["a", "b"]) == expected_report | |||
assert ( |
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You can remove the class_names=None
since this will be the default indeed.
That’s fine! I’m making my first contribution on Sklearn, I’m learning a lot. To point out something, when I'm doing if is_classifier(decision_tree):
if class_names is not None:
if len(class_names) != len(decision_tree.classes_):
raise ValueError(
"When `class_names` is not None, it should be a list containing as"
" many items as `decision_tree.classes_`. Got"
f" {len(class_names)} while the tree was fitted with"
f" {len(decision_tree.classes_)} classes."
)
else:
class_names = class_names
else:
class_names = decision_tree.classes_ But if I'm combining the two if statements into one, it doesn't recognize the list passed as if is_classifier(decision_tree):
if class_names is not None and len(class_names) != len(decision_tree.classes_):
raise ValueError(
"When `class_names` is not None, it should be a list containing as"
" many items as `decision_tree.classes_`. Got"
f" {len(class_names)} while the tree was fitted with"
f" {len(decision_tree.classes_)} classes."
)
else:
class_names = decision_tree.classes_ Gives expected_report = dedent(
"""
|--- feature_1 <= 0.00
| |--- class: a
|--- feature_1 > 0.00
| |--- class: b
"""
).lstrip()
> assert export_text(clf, class_names=["a", "b"]) == expected_report
E AssertionError: assert '|--- feature...-- class: 1\n' == '|--- feature...-- class: b\n'
E |--- feature_1 <= 0.00
E - | |--- class: a
E ? ^
E + | |--- class: -1
E ? ^^
E |--- feature_1 > 0.00
E - | |--- class: b...
E
E ...Full output truncated (4 lines hidden), use '-vv' to show
sklearn\tree\tests\test_export.py:414: AssertionError
|
if class_names is not None and len(class_names) != len(decision_tree.classes_):
raise ValueError(...)
else:
class_names = decision_tree.classes_ Indeed, here you will fall in the |
Yep, and after a if is_classifier(decision_tree):
if class_names is not None:
if len(class_names) != len(decision_tree.classes_):
raise ValueError(
"When `class_names` is not None, it should be a list containing as"
" many items as `decision_tree.classes_`. Got"
f" {len(class_names)} while the tree was fitted with"
f" {len(decision_tree.classes_)} classes."
)
class_names = class_names
else:
class_names = decision_tree.classes_ |
sklearn/tree/_export.py
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if class_names is not None: | ||
if len(class_names) != len(decision_tree.classes_): | ||
raise ValueError( | ||
"When `class_names` is not None, it should be a list containing as" | ||
" many items as `decision_tree.classes_`. Got" | ||
f" {len(class_names)} while the tree was fitted with" | ||
f" {len(decision_tree.classes_)} classes." | ||
) | ||
class_names = class_names | ||
else: | ||
class_names = decision_tree.classes_ |
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Actually, the most compact way would be the following.
if class_names is not None: | |
if len(class_names) != len(decision_tree.classes_): | |
raise ValueError( | |
"When `class_names` is not None, it should be a list containing as" | |
" many items as `decision_tree.classes_`. Got" | |
f" {len(class_names)} while the tree was fitted with" | |
f" {len(decision_tree.classes_)} classes." | |
) | |
class_names = class_names | |
else: | |
class_names = decision_tree.classes_ | |
if class_names is not None and len(class_names) != len(decision_tree.classes_): | |
raise ValueError( | |
"When `class_names` is not None, it should be a list containing as" | |
" many items as `decision_tree.classes_`. Got" | |
f" {len(class_names)} while the tree was fitted with" | |
f" {len(decision_tree.classes_)} classes." | |
) | |
elif class_names is None: | |
class_names = decision_tree.classes_ |
doc/whats_new/v1.3.rst
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- |Enhancement| Adds a `class_names` parameter to | ||
:func:`tree.export_text`. This allows specifying the parameter `class_names` | ||
for each target class in ascending numerical order. | ||
:pr:`25387` by :user:`William M <Akbeeh>`, :user:`Guillaume Lemaitre <glemaitre>`, and |
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You can remove my name here. This is fine to not have it.
doc/whats_new/v1.3.rst
Outdated
:pr:`25387` by :user:`William M <Akbeeh>`, :user:`Guillaume Lemaitre <glemaitre>`, and | ||
:user:`crispinlogan <crispinlogan>`. | ||
|
||
:mod:`sklearn.tree` |
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I think that you mixed the entry here. Could you make sure to have sklearn.tree
in the right alphabetic order and your entry just below it?
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LGTM. Thanks @Akbeeh
Thank you for all the comments. It was informative and I learned from it ! |
Putting a tag that this PR is waiting for another approval |
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Thank you for the PR @Akbeeh !
sklearn/tree/tests/test_export.py
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expected_report = dedent( | ||
""" | ||
|--- feature_1 <= 0.00 | ||
| |--- class: a | ||
|--- feature_1 > 0.00 | ||
| |--- class: b | ||
""" | ||
).lstrip() | ||
assert export_text(clf, class_names=["a", "b"]) == expected_report |
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Nit: To make a little more different compared to the test above:
expected_report = dedent( | |
""" | |
|--- feature_1 <= 0.00 | |
| |--- class: a | |
|--- feature_1 > 0.00 | |
| |--- class: b | |
""" | |
).lstrip() | |
assert export_text(clf, class_names=["a", "b"]) == expected_report | |
expected_report = dedent( | |
""" | |
|--- feature_1 <= 0.00 | |
| |--- class: cat | |
|--- feature_1 > 0.00 | |
| |--- class: dog | |
""" | |
).lstrip() | |
assert export_text(clf, class_names=["cat", "dog"]) == expected_report |
- if `None`, the class names are delegated to `decision_tree.classes_`; | ||
- if a list, the number of items should be the same as in | ||
`decition_tree.classes_` and will be used. | ||
|
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This needs a .. versionadded:: 1.3
directive to indicate that the parameter was added in 1.3.
sklearn/tree/_export.py
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if class_names is not None and len(class_names) != len(decision_tree.classes_): | ||
raise ValueError( | ||
"When `class_names` is not None, it should be a list containing as" | ||
" many items as `decision_tree.classes_`. Got" | ||
f" {len(class_names)} while the tree was fitted with" | ||
f" {len(decision_tree.classes_)} classes." | ||
) | ||
elif class_names is None: | ||
class_names = decision_tree.classes_ |
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Nit: This order for checking is a little clearer to me:
if class_names is not None and len(class_names) != len(decision_tree.classes_): | |
raise ValueError( | |
"When `class_names` is not None, it should be a list containing as" | |
" many items as `decision_tree.classes_`. Got" | |
f" {len(class_names)} while the tree was fitted with" | |
f" {len(decision_tree.classes_)} classes." | |
) | |
elif class_names is None: | |
class_names = decision_tree.classes_ | |
if class_names is None: | |
class_names = decision_tree.classes_ | |
elif len(class_names) != len(decision_tree.classes_): | |
raise ValueError( | |
"When `class_names` is a list, it should contain as" | |
" many items as `decision_tree.classes_`. Got" | |
f" {len(class_names)} while the tree was fitted with" | |
f" {len(decision_tree.classes_)} classes." | |
) |
Also, I think it is less wordy to directly state that "When class_names
is a list". (The test needs to be updated as well)
Thanks for the remarks, I've made changes. Hope it'll fulfill your requirements ! |
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Minor comment, otherwise LGTM!
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com>
class_names
in tree.export_text
class_names
to tree.export_text
Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com>
* ENH Raise NotFittedError in get_feature_names_out for MissingIndicator, KBinsDiscretizer, SplineTransformer, DictVectorizer (scikit-learn#25402) Co-authored-by: Alex <alex.buzenet.fr@gmail.com> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * DOC Update date and contributors list for v1.2.1 (scikit-learn#25459) * DOC Make MeanShift documentation clearer (scikit-learn#25305) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * Finishes boolean and arithmetic creation * Skeleton for traditional GP * DOC Reorder whats_new/v1.2.rst (scikit-learn#25461) Follow-up of scikit-learn#25459 Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> Co-authored-by: Jérémie du Boisberranger <jeremiedbb@users.noreply.github.com> Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> Co-authored-by: Jérémie du Boisberranger <jeremiedbb@users.noreply.github.com> * FIX fix faulty test in `cross_validate` that used the wrong estimator (scikit-learn#25456) * ENH Raise NotFittedError in get_feature_names_out for estimators that use ClassNamePrefixFeatureOutMixin and SelectorMixin (scikit-learn#25308) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * EFF Improve IsolationForest predict time (scikit-learn#25186) Co-authored-by: Felipe Breve Siola <felipe.breve-siola@klarna.com> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> Co-authored-by: Tim Head <betatim@gmail.com> * MAINT refactor spectral_clustering to call SpectralClustering (scikit-learn#25392) * TST reduce warnings in test_logistic.py (scikit-learn#25469) * CI Build doc on CircleCI (scikit-learn#25466) * DOC Update news footer for 1.2.1 (scikit-learn#25472) * MAINT Validate parameter for `sklearn.cluster.cluster_optics_xi` (scikit-learn#25385) Co-authored-by: adossantosalfam <anthony.dos_santos_alfama@insa-rouen.fr> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * MAINT Parameters validation for additive_chi2_kernel (scikit-learn#25424) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * Initial Program Creation * CI Include linting in CircleCI (scikit-learn#25475) * MAINT Update version number to 1.2.1 in SECURITY.md (scikit-learn#25471) * TST Sets random_state for test_logistic.py (scikit-learn#25446) * MAINT Remove -Wcpp warnings when compiling sklearn.decomposition._online_lda_fast (scikit-learn#25020) Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> * FIX Support readonly sparse datasets for `manhattan_distances` (scikit-learn#25432) * TST Add non-regression test for scikit-learn#7981 This reproducer is adapted from the one of this message: scikit-learn#7981 (comment) Co-authored-by: Loïc Estève <loic.esteve@ymail.com> * FIX Support readonly sparse datasets for manhattan * DOC Add entry in whats_new/v1.2.rst for 1.2.1 * FIX Fix comment * Update sklearn/metrics/tests/test_pairwise.py Co-authored-by: Christian Lorentzen <lorentzen.ch@gmail.com> * DOC Move entry to whats_new/v1.3.rst * Update sklearn/metrics/tests/test_pairwise.py Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> Co-authored-by: Loïc Estève <loic.esteve@ymail.com> Co-authored-by: Christian Lorentzen <lorentzen.ch@gmail.com> Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> * MAINT dynamically expose kulsinski and remove support in BallTree (scikit-learn#25417) Co-authored-by: Loïc Estève <loic.esteve@ymail.com> Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> closes scikit-learn#25212 * DOC Adds CirrusCI badge to readme (scikit-learn#25483) * CI add linter display name (scikit-learn#25485) * DOC update description of X in `FunctionTransformer.transform()` (scikit-learn#24844) * MAINT remove -Wcpp warnings when compiling sklearn.preprocessing._csr_polynomial_expansion (scikit-learn#25041) * DOC more didactic example of bisecting kmeans (scikit-learn#25494) Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> Co-authored-by: Arturo Amor <86408019+ArturoAmorQ@users.noreply.github.com> Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * ENH csr_row_norms optimization (scikit-learn#24426) Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> Co-authored-by: Jérémie du Boisberranger <jeremiedbb@users.noreply.github.com> * TST Allow callables as valid parameter regarding cloning estimator (scikit-learn#25498) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> Co-authored-by: Loïc Estève <loic.esteve@ymail.com> Co-authored-by: From: Tim Head <betatim@gmail.com> * DOC Fixes sphinx search on website (scikit-learn#25504) * FIX make IsotonicRegression always predict NumPy arrays (scikit-learn#25500) Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> * FEA Add Gamma deviance as loss function to HGBT (scikit-learn#22409) * FEA add gamma loss to HGBT * DOC add whatsnew * CLN address review comments * TST make test_gamma pass by not testing out-of-sample * TST compare gamma and poisson to LightGBM * TST fix test_gamma by comparing to MSE HGBT instead of Poisson HGBT * TST fix for test_same_predictions_regression for poisson * CLN address review comments * CLN nits * CLN better comments * TST use pytest.param with skip mark * TST Correct conditional test parametrization mark Co-authored-by: Christian Lorentzen <lorentzen.ch@gmail.com> * CI Trigger CI Builds currently fail because requests to Azure Ubuntu repository timeout. * DOC add comment for lax comparison with LightGBM * CLN tuple needs trailing comma --------- Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> * MAINT Remove -Wsign-compare warnings when compiling sklearn.tree._tree (scikit-learn#25507) * MAINT add more intuition on OAS computation based on literature (scikit-learn#23867) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * CI Allow cirrus arm tests to run with cd build commit tag (scikit-learn#25514) * CI Upload ARM wheels from CirrusCI to nightly and staging index (scikit-learn#25513) Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> * MAINT Remove -Wcpp warnings from sklearn.utils._seq_dataset (scikit-learn#25406) * FIX Fixes linux ARM CI on CirrusCI (scikit-learn#25536) * DOC Fix grammatical mistake in `mixture` module (scikit-learn#25541) * DOC add missing trailing colon (scikit-learn#25542) * MAINT Parameters validation for sklearn.datasets.make_classification (scikit-learn#25474) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * MNT Expose allow_nan tag in bagging (scikit-learn#25506) * MAINT Clean-up comments and rename variables in `_middle_term_sparse_sparse_{32, 64}` (scikit-learn#25449) Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> * DOC: remove incorrect statement (scikit-learn#25544) * MAINT Parameters validation for reconstruct_from_patches_2d (scikit-learn#25384) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * MAINT Parameter validation for sklearn.metrics.d2_pinball_score (scikit-learn#25414) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT Parameters validation for spectral_clustering (scikit-learn#25378) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * MAINT Parameters validation for sklearn.datasets.fetch_kddcup99 (scikit-learn#25463) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * DOC Update MLPRegressor docs (scikit-learn#25556) Co-authored-by: Ian Thompson <ian.thompson@hrblock.com> * DOC Update docs for KMeans (scikit-learn#25546) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * FIX BisectingKMeans crashes randomly (scikit-learn#25563) Fixes scikit-learn#25505 * ENH BaseLabelPropagation to accept sparse matrices (scikit-learn#19664) Co-authored-by: Kaushik Amar Das <kaushik.amar.das@accenture.com> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * MAINT Remove travis ci config and related doc (scikit-learn#25562) * DOC Add pynndescent to Approximate nearest neighbors in TSNE example (scikit-learn#25480) Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> * DOC Add docstring example to make_regression (scikit-learn#25551) Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT ensure that pos_label support all possible types (scikit-learn#25317) * MAINT Parameters validation for sklearn.metrics.f1_score (scikit-learn#25557) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * ENH Adds `class_names` to `tree.export_text` (scikit-learn#25387) Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * MAINT Replace cnp.ndarray with memory views in sklearn.tree._tree (where possible) (scikit-learn#25540) * DOC Change print format in TSNE example (scikit-learn#25569) Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> * FIX ColumnTransformer supports empty selection for pandas output (scikit-learn#25570) Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> * DOC fix docstring of _plain_sgd (scikit-learn#25573) * FIX Enable setting of sub-parameters for deprecated base_estimator param (scikit-learn#25477) * DOC Improve minor and bug-fix release processes documentation (scikit-learn#25457) Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> Co-authored-by: Jérémie du Boisberranger <jeremiedbb@yahoo.fr> * MAINT Remove ReadonlyArrayWrapper from _loss module (scikit-learn#25555) * MAINT Remove ReadonlyArrayWrapper from _loss module * CLN Remove comments about Cython 3.0 * MAINT Remove ReadonlyArrayWrapper from _kmeans (scikit-learn#25554) * MAINT Remove ReadonlyArrayWrapper from _kmeans * more const and remove blas compile warnings * CLN Adds comment about casting to non const pointers * Update sklearn/utils/_cython_blas.pyx * MAINT Remove ReadonlyArrayWrapper from DistanceMetric (scikit-learn#25553) * DOC improve stop_words description w.r.t. max_df range in CountVectorizer (scikit-learn#25489) * MAINT Removes ReadOnlyWrapper (scikit-learn#25586) * MAINT Parameters validation for sklearn.metrics.log_loss (scikit-learn#25577) * MAINT Adds comments and better naming into tree code (scikit-learn#25576) * MAINT Adds comments and better naming into tree code * CLN Use feature_values instead of Xf * Apply suggestions from code review Co-authored-by: Adam Li <adam2392@gmail.com> * DOC Improve comment from review * Apply suggestions from code review Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> --------- Co-authored-by: Adam Li <adam2392@gmail.com> Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> * FIX error when deserialzing a Tree instance from a read only buffer (scikit-learn#25585) * DOC: fix typo in California Housing dataset description (scikit-learn#25613) * ENH: Update KDTree, and example documentation (scikit-learn#25482) * ENH: Update KDTree, and example documentation * ENH: Add valid metric function and reference doc * CHG: Documentation update Co-authored-by: Adam Li <adam2392@gmail.com> * CHG: make valid metric property and fix doc string * FIX: documentation, and add code example * ENH: Change valid metric to class method, and doc * ENH: Change valid metric class variable, and doc * FIX: documentation error * FIX: documentation error * CHG: Use class method for valid metrics * FIX: CI problems --------- Co-authored-by: Adam Li <adam2392@gmail.com> Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> * TST Common test for checking estimator deserialization from a read only buffer (scikit-learn#25624) * DOC fix comment in plot_logistic_l1_l2_sparsity.py (scikit-learn#25633) Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> * DOC Places governance in navigation bar (scikit-learn#25618) * MAINT Check pyproject toml is consistent with min_dependencies (scikit-learn#25610) * MAINT Check pyproject toml is consistent with min_dependencies * CLN Make it clear that only SciPy and Cython are checked * CLN Revert auto formatter * MAINT Use newest NumPy C API in tree._criterion (scikit-learn#25615) * MAINT Use newest NumPy C API in tree._criterion * FIX Use pointer for children * FIX Fixes check_array nonfinite checks with ArrayAPI specification (scikit-learn#25619) * FIX Fixes check_array nonfinite checks with ArrayAPI specification * DOC Adds PR number * FIX Test on both cupy and numpy * DOC Correctly docstring in StackingRegressor.fit_transform (scikit-learn#25599) * MAINT Remove Cython compilation warnings ahead of Cython3.0 release (scikit-learn#25621) * ENH Preserve DataFrame dtypes in transform for feature selectors (scikit-learn#25102) * FIX report properly n_iter_ when warm_start=True (scikit-learn#25443) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * DOC fix typo in KMeans's param. (scikit-learn#25649) * FIX use const memory views in hist_gradient_boosting predictor (scikit-learn#25650) * DOC modified the graph for better readability (scikit-learn#25644) * MAINT Removes upper limit on setuptools (scikit-learn#25651) * DOC improve the `warm_start` glossary entry (scikit-learn#25523) * DOC Update governance document for SLEP020 (scikit-learn#25663) Co-authored-by: Tim Head <betatim@gmail.com> Co-authored-by: Christian Lorentzen <lorentzen.ch@gmail.com> * FIX renormalization of y_pred inside log_loss (scikit-learn#25299) * Remove renormalization of y_pred inside log_loss * Deprecate eps parameter in log_loss * ENH Allows target to be pandas nullable dtypes (scikit-learn#25638) * DOC unify usage of 'w.r.t.' (scikit-learn#25683) * MAINT Parameters validation for metrics.max_error (scikit-learn#25679) * MAINT Parameters validation for datasets.make_friedman1 (scikit-learn#25674) Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr> * MAINT Parameters validation for mean_pinball_loss (scikit-learn#25685) Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr> * DOC Specify behavior of None for CountVectorizer (scikit-learn#25678) * DOC Specify behaviour of None for TfIdfVectorizer max_features parameter (scikit-learn#25676) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * MAINT Set random state for plot_anomaly_comparison (scikit-learn#25675) * MAINT Parameters validation for cluster.mean_shift (scikit-learn#25684) Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr> * MAINT Parameters validation for sklearn.metrics.jaccard_score (scikit-learn#25680) Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr> * DOC Add the custom compiler section back (scikit-learn#25667) Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> * MAINT Parameters validation for precision_recall_fscore_support (scikit-learn#25681) Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr> * FIX Allow negative tol in SequentialFeatureSelector (scikit-learn#25664) * MAINT Replace deprecated cython conditional compilation (scikit-learn#25654) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> * DOC fix formatting typo in related_projects (scikit-learn#25706) * MAINT Parameters validation for metrics.mean_absolute_percentage_error (scikit-learn#25695) * MAINT Parameters validation for metrics.precision_recall_curve (scikit-learn#25698) Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr> * MAINT Parameter Validation for metrics.precision_score (scikit-learn#25708) Co-authored-by: jeremie du boisberranger <jeremiedbb@yahoo.fr> * CI Stablize build with random_state (scikit-learn#25701) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT Remove -Wcpp warnings when compiling arrayfuncs (scikit-learn#25415) Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> * DOC Add scikit-learn-intelex to related projects (scikit-learn#23766) Co-authored-by: Adrin Jalali <adrin.jalali@gmail.com> Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> * ENH Support float32 in SGDClassifier and SGDRegressor (scikit-learn#25587) * FIX Raise appropriate attribute error in ensemble (scikit-learn#25668) * FIX Allow OrdinalEncoder's encoded_missing_value set to the cardinality (scikit-learn#25704) * ENH Let csr_row_norms support multi-thread (scikit-learn#25598) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> Co-authored-by: Vincent M <maladiere.vincent@yahoo.fr> * MAINT Parameter Validation for feature_selection.chi2 (scikit-learn#25719) Co-authored-by: jeremiedbb <jeremiedbb@yahoo.fr> * MAINT Parameter Validation for feature_selection.f_classif (scikit-learn#25720) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT Parameters validation for sklearn.metrics.matthews_corrcoef (scikit-learn#25712) Co-authored-by: jeremiedbb <jeremiedbb@yahoo.fr> * MAINT parameter validation for sklearn.datasets.dump_svmlight_file (scikit-learn#25726) Co-authored-by: jeremiedbb <jeremiedbb@yahoo.fr> * MAINT Clean dead code in build helpers (scikit-learn#25661) * MAINT Use newest NumPy C API in metrics._dist_metrics (scikit-learn#25702) * CI Adds permissions to workflows that use GITHUB_TOKEN (scikit-learn#25600) Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> * FIX Improves error message in partial_fit when early_stopping=True (scikit-learn#25694) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * DOC Makes navbar static (scikit-learn#25688) * MAINT Remove redundant sparse square euclidian distances function (scikit-learn#25731) * MAINT Use float64 for accumulators in WeightVector* (scikit-learn#25721) * API make PatchExtractor being a real scikit-learn transformer (scikit-learn#24230) Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT Update pyparsing.py to use bool instead of double negation (scikit-learn#25724) * API Deprecates values in partial_dependence in favor of pdp_values (scikit-learn#21809) Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * API Use grid_values instead of pdp_values in partial_dependence (scikit-learn#25732) * MAINT remove np.product and inf/nan aliases in favor of canonical names (scikit-learn#25741) * MAINT Parameters validation for metrics.label_ranking_loss (scikit-learn#25742) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT Parameters validation for metrics.coverage_error (scikit-learn#25748) * MAINT Parameters validation for metrics.dcg_score (scikit-learn#25749) * MAINT replace cnp.ndarray with memory views in _fast_dict (scikit-learn#25754) * MAINT Parameter Validation for feature_selection.f_regression (scikit-learn#25736) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT Parameters validation for feature_selection.r_regression (scikit-learn#25734) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT Parameter Validation for metrics.get_scorer (scikit-learn#25738) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * DOC Move allowing pandas nullable dtypes to 1.2.2 (scikit-learn#25692) * MAINT replace cnp.ndarray with memory views in sparsefuncs_fast (scikit-learn#25764) * MAINT parameter validation for sklearn.datasets.fetch_covtype (scikit-learn#25759) Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> * MAINT Define centralized generic, but with explicit precision, types (scikit-learn#25739) * CI Disable network when SciPy requires it (scikit-learn#25743) * CI Open issue when arm wheel fails on CirrusCI (scikit-learn#25620) * ENH Speed-up expected mutual information (scikit-learn#25713) Co-authored-by: Kshitij Mathur <k.mathur68@gmail.com> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> Co-authored-by: Omar Salman <omar.salman@arbisoft.com> * FIX add retry mechanism to handle quotechar in read_csv (scikit-learn#25511) * Merge Population Creation (#1) --------- Co-authored-by: Alex Buzenet <94121450+albuzenet@users.noreply.github.com> Co-authored-by: Alex <alex.buzenet.fr@gmail.com> Co-authored-by: Guillaume Lemaitre <g.lemaitre58@gmail.com> Co-authored-by: Julien Jerphanion <git@jjerphan.xyz> Co-authored-by: Adam Kania <48769688+remilvus@users.noreply.github.com> Co-authored-by: Olivier Grisel <olivier.grisel@ensta.org> Co-authored-by: Jérémie du Boisberranger <jeremiedbb@users.noreply.github.com> Co-authored-by: Shady el Gewily <90049412+shadyelgewily-slimstock@users.noreply.github.com> Co-authored-by: John Pangas <swiftyxswaggy@outlook.com> Co-authored-by: Felipe Siola <fsiola@gmail.com> Co-authored-by: Felipe Breve Siola <felipe.breve-siola@klarna.com> Co-authored-by: Tim Head <betatim@gmail.com> Co-authored-by: Christian Lorentzen <lorentzen.ch@gmail.com> Co-authored-by: Loïc Estève <loic.esteve@ymail.com> Co-authored-by: Anthony22-dev <122220081+Anthony22-dev@users.noreply.github.com> Co-authored-by: adossantosalfam <anthony.dos_santos_alfama@insa-rouen.fr> Co-authored-by: Xiao Yuan <yuanx749@gmail.com> Co-authored-by: Thomas J. Fan <thomasjpfan@gmail.com> Co-authored-by: Omar Salman <omar.salman@arbisoft.com> Co-authored-by: Rahil Parikh <75483881+rprkh@users.noreply.github.com> Co-authored-by: Gael Varoquaux <gael.varoquaux@normalesup.org> Co-authored-by: Arturo Amor <86408019+ArturoAmorQ@users.noreply.github.com> Co-authored-by: Jérémie du Boisberranger <34657725+jeremiedbb@users.noreply.github.com> Co-authored-by: Meekail Zain <34613774+Micky774@users.noreply.github.com> Co-authored-by: davidblnc <40642621+davidblnc@users.noreply.github.com> Co-authored-by: Changyao Chen <changyao.chen@gmail.com> Co-authored-by: Nicola Fanelli <48762613+nicolafan@users.noreply.github.com> Co-authored-by: Vincent M <maladiere.vincent@yahoo.fr> Co-authored-by: partev <petrosyan@gmail.com> Co-authored-by: ouss1508 <121971998+ouss1508@users.noreply.github.com> Co-authored-by: ashah002 <97778401+ashah002@users.noreply.github.com> Co-authored-by: Ahmedbgh <83551938+Ahmedbgh@users.noreply.github.com> Co-authored-by: Pooja M <90301980+pm155@users.noreply.github.com> Co-authored-by: Ian Thompson <ianiat11@gmail.com> Co-authored-by: Ian Thompson <ian.thompson@hrblock.com> Co-authored-by: SANJAI_3 <86285670+sanjail3@users.noreply.github.com> Co-authored-by: Kaushik Amar Das <cozek@users.noreply.github.com> Co-authored-by: Kaushik Amar Das <kaushik.amar.das@accenture.com> Co-authored-by: Nawazish Alam <nawazishmail@gmail.com> Co-authored-by: William M <64324808+Akbeeh@users.noreply.github.com> Co-authored-by: Jérémie du Boisberranger <jeremiedbb@yahoo.fr> Co-authored-by: JanFidor <66260538+JanFidor@users.noreply.github.com> Co-authored-by: Adam Li <adam2392@gmail.com> Co-authored-by: Logan Thomas <logan.thomas005@gmail.com> Co-authored-by: Vyom Pathak <angerstick3@gmail.com> Co-authored-by: as-90 <88336957+as-90@users.noreply.github.com> Co-authored-by: Marvin Krawutschke <101656586+Marvvxi@users.noreply.github.com> Co-authored-by: Haesun Park <haesunrpark@gmail.com> Co-authored-by: Christine P. 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Reference Issues/PRs
closes #20576
closes #19824
What does this implement/fix? Explain your changes.
I've posted a message there #20576 (comment).
To summarize, the goal is to provide the
class_names
argument in the signature of the export_text function so that the user can choose the class name(s). So I don't focus on changing the display format of the tree.Any other comments?
I'll copy/paste the comment I've posted on the issue #20576.
Explanation
Here's the initialization of my test :
To remind, the signature of the function is as follows (https://github.com/scikit-learn/scikit-learn/blob/main/sklearn/tree/_export.py#L922) :
Of course, if I try to put the argument
class_names
, we have the following errorIf not, then we have :
After changing the source code (to see more, check "Changes in the code"), we have :
I hope this message was clear enough to understand. I can make changes if needed to fine tune.
Changes in the code
Before change
After change