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Commits on Jul 6, 2025

• Merge branch 'master' of github.com:smithlabcode/smithlab_cpp

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• OptionParser.hcpp: fixing signature for argv in OptionParser

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Commits on Feb 19, 2025

• Fixing a syntax bug in closing namespace

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Commits on Oct 19, 2024

• OptionParser.cpp: adding code to remove any formatting in terms of space tabs or newlines from the program description before reformatting it

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Commits on Jun 23, 2024

• Merge pull request #49 from smithlabcode/formatting-all-sources

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• Fixing bug in clang-format workflow

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• Running clang-format on all c++ source files

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• Putting guards around parts of source that should not be formatted

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• Merge pull request #48 from smithlabcode/clang-format

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• Adding a workflow to check source code formatting for c++ files

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• Simplifying the .clang-format file for now

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• Adding a .clang-format file for this repo

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• Merge pull request #47 from smithlabcode/update-build-system

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• Separating the user-configurable CXXFLAGS from the built-in AM_CXXFLAGS

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• autogen.sh: adding a script to generate the configure script

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• Adding a check for zlib.h header because it seems this check is needed even if the check for the corresponding library passes.

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• Removing the default Makefile and assuming automake will generate it

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Commits on Jun 9, 2024

• Merge pull request #46 from smithlabcode/udpating-option-parser-for-descriptions

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• OptionParser.[ch]pp: Adding an option for the 'about' message to be unformatted, which assumes it is formatted within the calling code

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Commits on Jun 2, 2024

• Merge pull request #45 from smithlabcode/makefile-am-update

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• Makefile.am: adding compiler options and warnings

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Commits on Nov 25, 2023

• GenomicRegion.cpp: checking that file opens properly for bed format files

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Commits on Oct 27, 2023

• ProgressBar: the percent-percent as replacement for backslash percent was clearly not right. Now just one percent, and in a c++ string it won't have the problems the percent sign had when used in a…

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Commits on Oct 19, 2023

• Merge pull request #44 from smithlabcode/silence-warnings-on-osx-clang

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• smithlab_utils.hpp: fixing a non-standard escape sequence for percent symbol

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• chromosome_utils.cpp: Adding includes, constexpr for constants and updating a long-deprecated function interface for adjust_region_size

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• OptionParser.cpp: Removing a variable with no effect when parsing config files

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Commits on Oct 5, 2023

• Merge branch 'master' of github.com:smithlabcode/smithlab_cpp

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• Updating OptionParser to allow for returning the vector rather than output parameters

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Commits on Sep 21, 2023

• chromosome_utils.cpp: consolidating the implementation of extract_regions_chrom_fasta for GenomicRegion and SimpleGenomicRegion. Removing variable length array by replacing with a string and readin…

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• smithlab_utils.hpp: in the kmer_counts function, removing variable length array to silence warnings. This function needs work.

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• smithlab_os.cpp: Using preprocessor directives to ensure that a variable only used in an assert only exists when the assert does

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Commits on Sep 18, 2023

• Merge branch 'master' of github.com:smithlabcode/smithlab_cpp

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• Fixes #43 by ensuring the proper arithmetic is done on the status of the progress bar

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Commits on Sep 13, 2023

• Updating the docs to mention c++17

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