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feat: add stats/incr/wstdev
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1b4cbcf
feat: add the JS implementation
anandkaranubc 37f1b4d
feat: add the JS test, benchmarks, examples
anandkaranubc 0cccb8c
feat: add the TS files
anandkaranubc b73c3c7
feat: add the docs
anandkaranubc 45f5de0
build: add package.json
anandkaranubc 9a3a0e7
docs: add README
anandkaranubc a0e8770
refactor: update implementation to handle nonnegative weights
anandkaranubc c7a50f0
refactor: update tests to handle nonnegative weights
anandkaranubc c790ae8
refactor: update 'weighted standard deviation' to 'weighted sample st…
anandkaranubc 57953c0
docs: update link name
anandkaranubc 284f9d8
docs: update svg
anandkaranubc a72ec14
docs: remove previous svg
anandkaranubc 008684c
refactor: update variable names
anandkaranubc e97076d
Merge remote-tracking branch 'upstream/develop' into incr-wstdev
stdlib-bot 5872553
Merge remote-tracking branch 'upstream/develop' into incr-wstdev
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<!-- | ||
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@license Apache-2.0 | ||
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Copyright (c) 2025 The Stdlib Authors. | ||
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Licensed under the Apache License, Version 2.0 (the "License"); | ||
you may not use this file except in compliance with the License. | ||
You may obtain a copy of the License at | ||
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http://www.apache.org/licenses/LICENSE-2.0 | ||
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Unless required by applicable law or agreed to in writing, software | ||
distributed under the License is distributed on an "AS IS" BASIS, | ||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
See the License for the specific language governing permissions and | ||
limitations under the License. | ||
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--> | ||
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# incrwstdev | ||
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> Compute a [weighted sample standard deviation][weighted-sample-stdev] incrementally. | ||
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<section class="intro"> | ||
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The [weighted sample standard deviation][weighted-sample-stdev] is defined as | ||
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<!-- <equation class="equation" label="eq:weighted_sample_standard_deviation" align="center" raw="s = \sqrt{\frac{\displaystyle\sum_{i=0}^{n-1} w_{i} \left( x_{i} - \bar{x} \right)^2}{\displaystyle\sum_{i=0}^{n-1} w_{i}}}" alt="Equation for the weighted sample standard deviation."> --> | ||
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```math | ||
s = \sqrt{\frac{\displaystyle\sum_{i=0}^{n-1} w_{i} \left( x_{i} - \bar{x} \right)^2}{\displaystyle\sum_{i=0}^{n-1} w_{i}}} | ||
``` | ||
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<!-- <div class="equation" align="center" data-raw-text="s = \sqrt{\frac{\displaystyle\sum_{i=0}^{n-1} w_{i} \left( x_{i} - \bar{x} \right)^2}{\displaystyle\sum_{i=0}^{n-1} w_{i}}}" data-equation="eq:weighted_sample_standard_deviation"> | ||
<img src="https://cdn.jsdelivr.net/gh/stdlib-js/stdlib@adbea9806383f70c982e3191475c874efba1296b/lib/node_modules/@stdlib/stats/incr/wstdev/docs/img/equation_weighted_sample_standard_deviation.svg" alt="Equation for the weighted sample standard deviation."> | ||
<br> | ||
</div> --> | ||
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<!-- </equation> --> | ||
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</section> | ||
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<!-- /.intro --> | ||
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<section class="usage"> | ||
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## Usage | ||
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```javascript | ||
var incrwstdev = require( '@stdlib/stats/incr/wstdev' ); | ||
``` | ||
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#### incrwstdev() | ||
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Returns an accumulator `function` which incrementally computes a [weighted sample standard deviation][weighted-sample-stdev]. | ||
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```javascript | ||
var accumulator = incrwstdev(); | ||
``` | ||
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#### accumulator( \[x, w] ) | ||
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If provided an input value `x` and a weight `w`, the accumulator function returns an updated weighted sample standard deviation. If not provided any input values, the accumulator function returns the current weighted sample standard deviation. | ||
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```javascript | ||
var accumulator = incrwstdev(); | ||
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var s = accumulator( 2.0, 1.0 ); | ||
// returns 0.0 | ||
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s = accumulator( 3.0, 2.0 ); | ||
// returns ~0.471 | ||
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s = accumulator( 2.0, 0.1 ); | ||
// returns ~0.478 | ||
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s = accumulator(); | ||
// returns ~0.478 | ||
``` | ||
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</section> | ||
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<!-- /.usage --> | ||
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<section class="notes"> | ||
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## Notes | ||
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- Input values are **not** type checked. If provided `NaN` or a value which, when used in computations, results in `NaN`, the accumulated value is `NaN` for **all** future invocations. If non-numeric inputs are possible, you are advised to type check and handle accordingly **before** passing the value to the accumulator function. | ||
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</section> | ||
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<!-- /.notes --> | ||
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<section class="examples"> | ||
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## Examples | ||
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<!-- eslint no-undef: "error" --> | ||
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```javascript | ||
var uniform = require( '@stdlib/random/base/uniform' ); | ||
var incrwstdev = require( '@stdlib/stats/incr/wstdev' ); | ||
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var accumulator; | ||
var v; | ||
var w; | ||
var i; | ||
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// Initialize an accumulator: | ||
accumulator = incrwstdev(); | ||
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// For each simulated datum, update the weighted sample standard deviation... | ||
for ( i = 0; i < 100; i++ ) { | ||
v = uniform( 0.0, 100.0 ); | ||
w = uniform( 0.0, 100.0 ); | ||
accumulator( v, w ); | ||
} | ||
console.log( accumulator() ); | ||
``` | ||
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</section> | ||
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<!-- /.examples --> | ||
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<!-- Section for related `stdlib` packages. Do not manually edit this section, as it is automatically populated. --> | ||
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<section class="related"> | ||
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* * * | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. This is a new package, so all these related links should be removed. |
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## See Also | ||
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- <span class="package-name">[`@stdlib/stats/incr/kurtosis`][@stdlib/stats/incr/kurtosis]</span><span class="delimiter">: </span><span class="description">compute a corrected sample excess kurtosis incrementally.</span> | ||
- <span class="package-name">[`@stdlib/stats/incr/wmean`][@stdlib/stats/incr/wmean]</span><span class="delimiter">: </span><span class="description">compute a weighted arithmetic mean incrementally.</span> | ||
- <span class="package-name">[`@stdlib/stats/incr/stdev`][@stdlib/stats/incr/stdev]</span><span class="delimiter">: </span><span class="description">compute a corrected sample standard deviation incrementally.</span> | ||
- <span class="package-name">[`@stdlib/stats/incr/mstdev`][@stdlib/stats/incr/mstdev]</span><span class="delimiter">: </span><span class="description">compute a moving corrected sample standard deviation incrementally.</span> | ||
- <span class="package-name">[`@stdlib/stats/incr/skewness`][@stdlib/stats/incr/skewness]</span><span class="delimiter">: </span><span class="description">compute a corrected sample skewness incrementally.</span> | ||
- <span class="package-name">[`@stdlib/stats/incr/summary`][@stdlib/stats/incr/summary]</span><span class="delimiter">: </span><span class="description">compute a statistical summary incrementally.</span> | ||
- <span class="package-name">[`@stdlib/stats/incr/variance`][@stdlib/stats/incr/variance]</span><span class="delimiter">: </span><span class="description">compute an unbiased sample variance incrementally.</span> | ||
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</section> | ||
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<!-- /.related --> | ||
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<!-- Section for all links. Make sure to keep an empty line after the `section` element and another before the `/section` close. --> | ||
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<section class="links"> | ||
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[weighted-sample-stdev]: https://en.wikipedia.org/wiki/Weighted_arithmetic_mean#Weighted_sample_variance | ||
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<!-- <related-links> --> | ||
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[@stdlib/stats/incr/kurtosis]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/kurtosis | ||
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[@stdlib/stats/incr/wmean]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/wmean | ||
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[@stdlib/stats/incr/stdev]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/stdev | ||
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[@stdlib/stats/incr/mstdev]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/mstdev | ||
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[@stdlib/stats/incr/skewness]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/skewness | ||
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[@stdlib/stats/incr/summary]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/summary | ||
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[@stdlib/stats/incr/variance]: https://github.com/stdlib-js/stdlib/tree/develop/lib/node_modules/%40stdlib/stats/incr/variance | ||
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<!-- </related-links> --> | ||
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</section> | ||
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<!-- /.links --> |
106 changes: 106 additions & 0 deletions
106
lib/node_modules/@stdlib/stats/incr/wstdev/benchmark/benchmark.js
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/** | ||
* @license Apache-2.0 | ||
* | ||
* Copyright (c) 2025 The Stdlib Authors. | ||
* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
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'use strict'; | ||
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// MODULES // | ||
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var bench = require( '@stdlib/bench' ); | ||
var Float64Array = require( '@stdlib/array/float64' ); | ||
var uniform = require( '@stdlib/random/base/uniform' ); | ||
var pkg = require( './../package.json' ).name; | ||
var incrwstdev = require( './../lib' ); | ||
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// MAIN // | ||
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bench( pkg, function benchmark( b ) { | ||
var f; | ||
var i; | ||
b.tic(); | ||
for ( i = 0; i < b.iterations; i++ ) { | ||
f = incrwstdev(); | ||
if ( typeof f !== 'function' ) { | ||
b.fail( 'should return a function' ); | ||
} | ||
} | ||
b.toc(); | ||
if ( typeof f !== 'function' ) { | ||
b.fail( 'should return a function' ); | ||
} | ||
b.pass( 'benchmark finished' ); | ||
b.end(); | ||
}); | ||
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bench( pkg+'::accumulator', function benchmark( b ) { | ||
var acc; | ||
var len; | ||
var x; | ||
var v; | ||
var i; | ||
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acc = incrwstdev(); | ||
len = 100; | ||
x = new Float64Array( len ); | ||
for ( i = 0; i < len; i++ ) { | ||
x[ i ] = uniform( 0.0, 1.0 ); | ||
} | ||
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b.tic(); | ||
for ( i = 0; i < b.iterations; i++ ) { | ||
v = acc( x[ i % len ], 1.0 ); | ||
if ( v !== v ) { | ||
b.fail( 'should not return NaN' ); | ||
} | ||
} | ||
b.toc(); | ||
if ( v !== v ) { | ||
b.fail( 'should not return NaN' ); | ||
} | ||
b.pass( 'benchmark finished' ); | ||
b.end(); | ||
}); | ||
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bench( pkg+'::accumulator,known_mean', function benchmark( b ) { | ||
var acc; | ||
var len; | ||
var x; | ||
var v; | ||
var i; | ||
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acc = incrwstdev( 3.0 ); | ||
len = 100; | ||
x = new Float64Array( len ); | ||
for ( i = 0; i < len; i++ ) { | ||
x[ i ] = uniform( 0.0, 1.0 ); | ||
} | ||
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b.tic(); | ||
for ( i = 0; i < b.iterations; i++ ) { | ||
v = acc( x[ i % len ], 1.0 ); | ||
if ( v !== v ) { | ||
b.fail( 'should not return NaN' ); | ||
} | ||
} | ||
b.toc(); | ||
if ( v !== v ) { | ||
b.fail( 'should not return NaN' ); | ||
} | ||
b.pass( 'benchmark finished' ); | ||
b.end(); | ||
}); |
89 changes: 89 additions & 0 deletions
89
...dlib/stats/incr/wstdev/docs/img/equation_weighted_sample_standard_deviation.svg
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To avoid additional variables. Bigger picture, we want to make ES5 examples as easy to translate to ES6+ as possible in an automated fashion.