Raw dump of Kenneth Reitz's DNA Sequence, Ancestry, Genealogy, &c.
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Nov 16, 2023 - HTML
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human-genome
Here are 11 public repositories matching this topic...
Transformer-based sequence correction method for genome assembly polishing
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Jun 21, 2024 - Jupyter Notebook
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
aws bioinformatics snakemake scalable ec2 ngs slurm budgeting bioinformatics-pipeline informatics scaling cwl wgs ephemeral genomic-data-analysis human-genome parallel-cluster snv-call giab
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Dec 12, 2024 - WDL
How compressible is a human genome sequence?
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May 15, 2024 - Shell
A Python tool to calculate penetrance tables for high-order epistasis models
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Apr 19, 2022 - Python
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May 18, 2022
A repository containing all the file projects that I have for the Bioinformatics 3 (COMP 4312b) course.
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Jan 11, 2023
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
bioinformatics snps vcf gatk variant-calling bam population-genetics samtools bwa genome-analysis indels bcftools variant-annotation reference-genome exome-sequencing 1000genomes snpeff haplotypecaller human-genome gatk4-haplotypecaller
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Nov 26, 2024 - R
Program Structures and Algorithms GENETIC ALGORITHM
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Apr 20, 2019 - Java
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
python r jupyter jupyter-notebook pandas python3 ensembl deseq2 biomart cancer-research interactive-data-analysis acute-myeloid-leukemia human-genome human-genomics
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Jul 19, 2023 - Jupyter Notebook
Repository for variant calling utilizing bioinformatics tools and databases
java bioinformatics python3 linux-shell bioinformatics-pipeline samtools genome-analysis bioinformatics-analysis variant-analysis ubantu fastqc minimap2 bioinformatics-tool hg38 gatk4 human-genome
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Jul 9, 2024
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