Fulgor is a fast and space-efficient colored de Bruijn graph index.

Bioinformatics 101 tool for counting unique k-length substrings in DNA

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Very large scale k-mer counting and analysis on Apache Spark.

fast and comprehensive k-mer counting package

Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022

Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)

KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.

K-mer counting algorithms and count-data utilities for the BioJulia framework

Extract kmers, skipmers, minimizers.

bit-packed k-mers methods for Golang

Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

Extract SNPs and accessory differences in closely related bacterial genomes from k-mers

The generation of a kmers dataset that is associated with multiple gene sequences and the further manipulation of this generated dataset are the main contents of the current project.

Convert python string to hashed kmers and back again

reference-free base quality score recalibration