Intersex Manga
Manga
Manga featuring intersex characters. Some are not human. Some are headcanons- those are indicated by question marks.
Not on MAL (yet):
Ore ga Ryousei Nante Mitomenai!
Kiri (intersex boy) (main)
Kiri's mom (intersex woman) (supporting)
Me wo Tojite Daite
Hanafusa (intersex woman) (main)
Ryouseika Majiwaru Unmei no Tsugai
Aritoki Ujou (intersex man) (main)
Merry Tuesday
Hwayo (intersex woman?) (protagonist)
Mangosteen no Koibito
? (intersex) (main?)
Gentle Forest
Seowon Jung (intersex boy)
"Seibetsu ga, Nai!" Hito-tachi no Hoken Taiiku
Anokoro Ore wa Joshikousei
Asia o Futari de Aruite Mita - Chuusei Oji-san to Otokonoko no Ryokouki
Chuusei Furo e Youkoso!
Ore no Mawari no "Seibetsu ga, Nai!" Hitotachi - Arai Shou no Sekumai Kouyuuroku
Saikin sa Otona to Wakamono ga sa... Suggoi Chigaku ne!?
Seibetsu ga, Nai!
Seibetsu R!
Seibetsu x Renai Hakusho
Shou Arai (intersex man) (protagonist)
Not on MAL (yet):
Ore ga Ryousei Nante Mitomenai!
Kiri (intersex boy) (main)
Kiri's mom (intersex woman) (supporting)
Me wo Tojite Daite
Hanafusa (intersex woman) (main)
Ryouseika Majiwaru Unmei no Tsugai
Aritoki Ujou (intersex man) (main)
Merry Tuesday
Hwayo (intersex woman?) (protagonist)
Mangosteen no Koibito
? (intersex) (main?)
Gentle Forest
Seowon Jung (intersex boy)
"Seibetsu ga, Nai!" Hito-tachi no Hoken Taiiku
Anokoro Ore wa Joshikousei
Asia o Futari de Aruite Mita - Chuusei Oji-san to Otokonoko no Ryokouki
Chuusei Furo e Youkoso!
Ore no Mawari no "Seibetsu ga, Nai!" Hitotachi - Arai Shou no Sekumai Kouyuuroku
Saikin sa Otona to Wakamono ga sa... Suggoi Chigaku ne!?
Seibetsu ga, Nai!
Seibetsu R!
Seibetsu x Renai Hakusho
Shou Arai (intersex man) (protagonist)

Manga, 17 vol, 2003
Me:-
Author:7
Hiromi (intersex woman) (protagonist)
Ryouma (intersex woman) (protagonist)
Haru Hoshino (intersex boy) (protagonist)
Miwako Aihara (intersex girl) (supporting)
Inui Shizue (intersex woman) (minor)
Kuma (intersex man) (minor)
Ryouma (intersex woman) (protagonist)
Haru Hoshino (intersex boy) (protagonist)
Miwako Aihara (intersex girl) (supporting)
Inui Shizue (intersex woman) (minor)
Kuma (intersex man) (minor)

Manga, 1 vol, 2019
Me:-
Author:7
Shou Arai (intersex man) (protagonist)

Manga, 1 vol, 1975
Me:-
Author:-
Frol Frolbericheri (intersex woman) (main)
Vidmenir "Knu" Knume (intersex man) (supporting)
Vidmenir "Knu" Knume (intersex man) (supporting)

Manga, 1 vol, 1976
Me:-
Author:-
Frol Frolbericheri (intersex woman) (main)
Vidmenir "Knu" Knume (intersex man) (supporting)
Vidmenir "Knu" Knume (intersex man) (supporting)

Manga, 1 vol, 1972
Me:-
Author:7
(Chapter 4: Suimu/A Drunken Dream)
Lem Palmino (intersex man) (main)
Lem Palmino (intersex man) (main)

Manga, 4 vol, 1991
Me:-
Author:-
Yuuji Ayukawa (intersex boy) (protagonist)

Manga, 10 vol, 2004
Me:-
Author:-
Mashiro Ichijou (genderfluid? and intersex) (protagonist)

Manga, 5 vol, 2002
Me:-
Author:-
Mako Kashiwagi (intersex girl) (main)
Mako's dad (intersex man) (supporting)
Mako's dad (intersex man) (supporting)

Manga, 1 vol, 2013
Me:-
Author:-
You/Yoh Yukino (intersex man) (main)

Manga, 14 vol, -
Me:-
Author:-
Kagetsu (intersex man) (main)
Kouryuu (intersex man) (supporting)
Kouryuu (intersex man) (supporting)

Manga, 12 vol, 1982
Me:-
Author:-
Aru Tiokia (intersex woman?) (main)
Eudica/Yuudika (intersex man?) (main)
Eudica/Yuudika (intersex man?) (main)

Manga, 5 vol, 2014
Me:-
Author:-
(Name removed for spoilers) (intersex man) (main)

Light Novel, 5 vol, 2014
Me:-
Author:-
(Name removed for spoilers) (intersex man) (main)

Manga, 15 vol, 2009
Me:-
Author:-
Izana Shinatose (intersex girl/third gender) (main)

Manga, ? vol, 2008
Me:-
Author:-
(Name removed for spoilers) (agender and intersex) (main)

Light Novel, 1 vol, 2007
Me:-
Author:-
(Name removed for spoilers) (agender and intersex) (main)

Manga, 5 vol, 2012
Me:-
Author:-
Marshall Cruel/Marshall Zankoku (intersex woman) (supporting)

Manga, 3 vol, 2019
Me:-
Author:-
Dahlia (intersex woman) (supporting)
Desmond (bigender and intersex) (supporting)
Desmond (bigender and intersex) (supporting)

Manga, ? vol, 2019
Me:-
Author:-
Miyuki Hebinuma (intersex man) (supporting)

Manga, ? vol, 2018
Me:-
Author:-
Kuku (intersex girl) (supporting)
Michika Takezuka (intersex girl) (supporting)
Ooma Takezuka (intersex girl) (supporting)
Michika Takezuka (intersex girl) (supporting)
Ooma Takezuka (intersex girl) (supporting)

Manga, 13 vol, 2005
Me:-
Author:-
Elegy (genderfluid? and intersex) (supporting)