LGBT Sci-Fi Anime
Anime
Science fiction anime with LGBT (gay, lesbian, bisexual, binary transgender, non-binary, genderqueer, intersex, queer, pansexual, asexual, aromantic, etc.) characters. Some are headcanons- those are indicated by question marks.
Manga version: https://myanimelist.net/stacks/44936
Manga version: https://myanimelist.net/stacks/44936

Movie, 1986,
1 ep
Me:-
Author:6
Frol Frolbericheri (intersex woman) (main)
Vidmenir Knume (intersex man) (supporting)
Vidmenir Knume (intersex man) (supporting)

TV, 2009,
13 eps
Me:-
Author:6
Maria Oosawa (lesbian?) (protagonist)
Canaan (lesbian?) (main)
Liang Qi (lesbian) (supporting)
Canaan (lesbian?) (main)
Liang Qi (lesbian) (supporting)

TV, 2019,
24 eps
Me:-
Author:8
Dahlia (intersex woman) (supporting)
Ertegun (bi?) (supporting)
Cybelle (lesbian?) (supporting)
Desmond (bigender and intersex) (supporting)
Mermaid Sisters (agender) (minor)
Marie (bi) (minor)
Anne (lesbian) (minor)
Ertegun (bi?) (supporting)
Cybelle (lesbian?) (supporting)
Desmond (bigender and intersex) (supporting)
Mermaid Sisters (agender) (minor)
Marie (bi) (minor)
Anne (lesbian) (minor)

TV, 1998,
26 eps
Me:-
Author:8
Edward "Ed" Wong Hau Pepelu Tivrusky IV (genderqueer) (main)
Grencia "Gren" Mars Elijah Guo Eckener ("intersex" man and gay) (supporting)
Julius (gay) (minor)
Grencia "Gren" Mars Elijah Guo Eckener ("intersex" man and gay) (supporting)
Julius (gay) (minor)

TV, 2018,
24 eps
Me:-
Author:-
Ikuno "Code:196" (lesbian) (main)
Nanami "Code 703" (lesbian) (supporting)
9'α (agender? and bi?) (supporting)
Nanami "Code 703" (lesbian) (supporting)
9'α (agender? and bi?) (supporting)

TV, 2019,
24 eps
Me:-
Author:-
Senkuu Ishigami (aroace) (protagonist)
Ryusui Nanami (bi/pan) (main)
Francois (non-binary?) (supporting)
Ryusui Nanami (bi/pan) (main)
Francois (non-binary?) (supporting)

TV, 2016,
13 eps
Me:-
Author:6
Cocona Cocomine (lesbian?) (protagonist)
Papika (lesbian?) (main)
Papika (lesbian?) (main)

TV, 2013,
12 eps
Me:-
Author:-
Rui Ninomiya (trans girl/gender non-conforming) (main)
O.D. (genderless) (main)
Berg Katze (genderless) (main)
O.D. (genderless) (main)
Berg Katze (genderless) (main)

TV, 2006,
201 eps
Me:-
Author:-
Kyuubei Yagyuu (genderqueer?) (supporting)
Haji (non-binary?) (supporting)
Azumi "Agomi" Agonoske (gay and drag queen) (supporting)
Tokumori Saigou (drag queen) (supporting)
Hachirou (trans man and gay) (supporting)
Honjou Kyoushirou (gay) (supporting)
Shimura Tae (bi) (supporting)
Haji (non-binary?) (supporting)
Azumi "Agomi" Agonoske (gay and drag queen) (supporting)
Tokumori Saigou (drag queen) (supporting)
Hachirou (trans man and gay) (supporting)
Honjou Kyoushirou (gay) (supporting)
Shimura Tae (bi) (supporting)

TV, 1972,
105 eps
Me:-
Author:-
Berg Katse (intersex and genderfluid?) (main)

OVA, 1996,
1 ep
Me:-
Author:6
Osamu (gay) (protagonist)
Kimera (intersex man and gay) (main)
Kianu (gay) (supporting)
Kimera (intersex man and gay) (main)
Kianu (gay) (supporting)

TV, 2002,
26 eps
Me:-
Author:-
Motoko Kusanagi (bi) (protagonist)

TV, 2008,
6 eps
Me:-
Author:6
Rin Asogi (bi) (protagonist)
Mimi (lesbian) (main)
(Name removed for spoilers) (agender and intersex) (main)
Female informants (lesbians) (minor)
Mary (trans woman) (minor)
Sue (drag queen) (minor)
Mimi (lesbian) (main)
(Name removed for spoilers) (agender and intersex) (main)
Female informants (lesbians) (minor)
Mary (trans woman) (minor)
Sue (drag queen) (minor)

TV, 2011,
11 eps
Me:-
Author:-
Shion (gay) (protagonist)
Nezumi (gay) (main)
Inukashi/Dogkeeper (non-binary) (supporting)
Nezumi (gay) (main)
Inukashi/Dogkeeper (non-binary) (supporting)

TV, 2012,
22 eps
Me:-
Author:9
Yayoi Kunizuka (lesbian) (supporting)
Shion Karanomori (bi) (supporting)
Rikako Ouryou (lesbian) (supporting)
Rina Takazaki (lesbian) (minor)
Shion Karanomori (bi) (supporting)
Rikako Ouryou (lesbian) (supporting)
Rina Takazaki (lesbian) (minor)

TV, 2015,
12 eps
Me:-
Author:-
Yuuta Iridatsu (trans boy?, gender-bending/body swap) (protagonist)

TV, 2003,
26 eps
Me:-
Author:8
Nenene Sumiregawa (lesbian?) (protagonist)
Yomiko Readman (lesbian?) (main)
Anita (lesbian?) (main)
Nancy Makuhari (lesbian?) (supporting)
Hisami Hishiishi (lesbian) (supporting)
Yomiko Readman (lesbian?) (main)
Anita (lesbian?) (main)
Nancy Makuhari (lesbian?) (supporting)
Hisami Hishiishi (lesbian) (supporting)

TV, 2009,
24 eps
Me:-
Author:-
Momoko (trans woman) (supporting)
Miiko Kumagai (trans woman) (supporting)
Miiko Kumagai (trans woman) (supporting)

TV, 1995,
26 eps
Me:-
Author:8
Shinji Ikari (bi) (protagonist)
Kaworu Nagisa (gay or pan) (supporting)
Kaworu Nagisa (gay or pan) (supporting)

TV, 2012,
25 eps
Me:-
Author:4
Saki Watanabe (bi/pan) (protagonist)
Satoru Asahina (bi/pan) (main)
Maria Akizuki (bi/pan) (main)
Shun Aonuma (bi/pan) (main)
Satoru Asahina (bi/pan) (main)
Maria Akizuki (bi/pan) (main)
Shun Aonuma (bi/pan) (main)

TV, 2023,
13 eps
Me:-
Author:-
Kiruko (trans woman?) (protagonist)
Kuku (intersex girl) (supporting)
Michika Takezuka (intersex girl) (supporting)
Ooma Takezuka (intersex girl) (supporting)
Kuku (intersex girl) (supporting)
Michika Takezuka (intersex girl) (supporting)
Ooma Takezuka (intersex girl) (supporting)

TV, 2011,
25 eps
Me:-
Author:-
Nathan Seymour/Fire Emblem (agender and bi) (supporting)

TV, 2017,
12 eps
Me:-
Author:-
Kuroumaru Tokisaka (genderless) (main)