Bioconductor Sce

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sce SingleCellExperiment merge

updated 23 months ago by mollyab12 • 0 • written 2.8 years ago by achoppe ▴ 10

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2.3k

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SingleCellExperiment cluster identities sce

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by reinepapillon • 0

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1.7k

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singlecellexperiment sce scater

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by bharris • 0

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3.0k

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SingleCellExperiment scater sce quality control

updated 4.0 years ago by 1498554536 • 0 • written 4.9 years ago by Linda • 0

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2.0k

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sce markers single cell DE clusters

5.3 years ago ludmi.b • 0

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sce singlecellexperiment scRNAseq subsetting

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by TJ • 0

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1.1k

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scater sce biotype R

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by thebadpenny • 0

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1.2k

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sce biomart annotation

updated 7.6 years ago by Mike Smith ★ 6.6k • written 7.6 years ago by linda.c.dansereau • 0

8 results • Page 1 of 1

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Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…

Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k

My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …

Answer: Csaw normalization strategies - general inquiry by Aaron Lun ★ 28k

IIUC you're saying that 68 and 71 are more similar to each other than to all of the other replicates (more efficient IP, if I'm reading you…

Comment: DESeq2: thousands of NA for pvalues? by fuqichen1 • 0

Hi, do these genes need to be removed from GSEA analysis?

Comment: Take a break from your FPS and try Evony! by leo • 0

Race to victory with a single tap in Race Clicker Tap Tap Game at [Race Clicker][1]. Upgrade your runner and strategically outpace your opp…

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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