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The drug design has several branches of development, such as irrational selection, rational search and newer layering, computer subtraction, biological mapping of biological objects, simulation of the target and the drug. One way or another, the share of rational search and human intellectual activity in the process of developing the design of preparations is, as before, great. Biomolecular mapping and mathematical models are not able to replace the accumulated experience in the design, and as a result, the drug design develops new theoretical methods. One of these methods is to regulate the activity and strength of the drug, through the use of radicals with more or less complementary interaction forces. The degree of conformity of the chemical compound drug and the target is measured by several quantities: This is the geometric correspondence of the placement of the necessary chemical radicals. This is a quantitative match and a qualitative match. As well as compliance with the degree of mobility, the dynamic behavior of the molecule. Regulation of the activity of a substance is an important parameter that allows you to create drugs with convenient dosage or high safety. To achieve high safety performance, a method of reducing the energy of the bond between the drug and the target is used. This approach makes it possible to establish a low ceiling of maximum activity. Even in case of overdose. these drugs show low activity, which eliminates the development of critical side effects. .. ...
Drug testing and analysis, 2015
In this work, emergence patterns of synthetic cannabinoids were utilized in an attempt to predict those that may appear on the drug market in the future. Based on this information, two base structures of the synthetic cannabinoid analogues - (1H-indol-3-yl(2,2,3,3-tetramethylcyclopropyl)methanone and 1H-indol-3-yl(adamantan-1-yl)methanone) - together with three substituents - butyl, 4-fluorobutyl and ethyl tetrahydropyran - were selected for synthesis. This resulted in a total of six synthetic cannabinoid analogues that to the authors' knowledge have not yet appeared on the drug market. Spectroscopic data, including nuclear magnetic resonance (NMR), mass spectrometry (MS), and Fourier transform infrared (FTIR) spectroscopy (solid and gas phase), are presented for the synthesized analogues and some additional related cannabinoids. In this context, the suitability of the employed techniques for the identification of unknowns is discussed and the use of GC-FTIR as a secondary compl...
Current Medicinal Chemistry, 2011
Rational design is applied in the discovery of novel lead drugs. Its rapid development is mainly attributed to the tremendous advancements in the computer science, statistics, molecular biology, biophysics, biochemistry, medicinal chemistry, pharmacokinetics and pharmacodynamics experienced in the last few decades. The promising feature that characterizes the application of rational drug design is that it uses for developing potential leads in drug discovery all known theoretical and experimental knowledge of the system under study. The utilization of the knowledge of the molecular basis of the system ultimately aims to reduce human power cost, time saving and laboratory expenses in the drug discovery. In this review paper various strategies applied for systems which include: (i) absence of knowledge of the receptor active site; (ii) the knowledge of a homology model of a receptor, (iii) the knowledge of the experimentally determined (i.e. X-ray crystallography, NMR spectroscopy) coordinates of the active site of the protein in absence and (iv) the presence of the ligand will be analyzed.
Journal of the Chilean Chemical Society, 2008
A ZINDO/1 quantum-chemical structure-affinity relationship study with the KPG model is presented for the in vitro interaction of a group of classical, indolederived and aminoalkylindole-derived cannabinoids with CB 1 and CB 2 receptors. From this work the following conclusions are obtained. CB 1 and CB 2 CB 2 receptor affinities are regulated by different mechanisms involving orbital and charge control. Nevertheless CB 1 and CB 2 classical ligands share three common features: a hydrogen bond to a lysine (for CB 1) or serine (for CB 2), a fully aromatic ring and a branched carbon side chain. In the case of indole-derived and aminoalkylindolederived cannabinoids orientation and alignment rules have been defined as a basis for the comparison of noncongeneric molecules. In this way it was possible to associate the location of molecular fragments of these systems with known molecular systems such as classical cannabinoids. For aminoalkylindoles we have proposed the locus with which they bind to a second receptor site that is available to WIN-55212-2 but not to classical cannabinoids. On the basis of our results we propose a new molecule that should help to discriminate between the above two receptor sites.
European Journal of Medicinal Chemistry, 2011
European Journal of Pharmacology, 2009
Computer aided drug design Drug targets Gene drug toxicity Bioinformatics tools Docking Lead drug like molecule Ancient approach In this article, current knowledge of drug design is reviewed and an approach of rational drug design is presented. The process of drug development is challenging, expensive, and time consuming, although this process has been accelerated due to the development of computational tools and methodologies. The current target based drug design approach is incomplete because most of the drugs developed by structure guided approaches have been shown to have serious toxic side effects. Otherwise these drugs would have been an ideal choice for the treatment of diseases. Hence, rational drug design would require a multidisciplinary approach. In this regard, incorporation of gene expression technology and bioinformatics tools would be indispensable in the structure based drug design. Global gene expression data and analysis of such data using bioinformatics tools will have numerous benefits such as efficiency, cost effectiveness, time saving, and will provide strategies for combination therapy in addition to overcoming toxic side effects. As a result of incorporation of gene expression data, partial benefit of the structure based drug design is slowly emerging and rapidly changing the approach of the drug development process. To achieve the full benefit of developing a successful drug, multidisciplinary approaches (approaches such as computational chemistry and gene expression analysis, as discussed in this article) would be necessary. In the future, there is adequate room for the development of more sophisticated methodologies.
Journal of scientific & industrial research, 2001
Résumé/Abstract The major techniques of drug discovery processes for the past thirty years have been summarized. However, because of rapid advances in information technology and emergence of plethora of newer techniques, eg, PCMM, UPGMA, MMG, FALS, MMFF, etc., this short review obviously does not give an exhaustive coverage. The paper summarizes different approaches of rational drug design methods with a primary focus on quantitative structure-activity relationship (QSAR) and molecular modelling studies. Apart from an ...
Topics in Medicinal Chemistry, 2015
Drug research requires interdisciplinary teamwork at the interface between chemistry, biology and medicine. Therefore, the new topic-related series Topics in Medicinal Chemistry will cover all relevant aspects of drug research, e.g. pathobiochemistry of diseases, identification and validation of (emerging) drug targets, structural biology, drugability of targets, drug design approaches, chemogenomics, synthetic chemistry including combinatorial methods, bioorganic chemistry, natural compounds, high-throughput screening, pharmacological in vitro and in vivo investigations, drug-receptor interactions on the molecular level, structure-activity relationships, drug absorption, distribution, metabolism, elimination, toxicology and pharmacogenomics.
Advanced Journal of Chemistry-Section A, 2019
Some thermophysical parameters of CBD and THC such as free energy, entropy, dipole moment, binding energy, nuclear energy, electronics energy, heat of formation, and chemical reactivity like HOMO (Occupied Molecular Orbital Highest) and LUMO (Lowest Unoccupied Molecular Orbital, HOMO-LUMO gap, ionization potential and electron affinity were calculated via semi-empirical and molecular mechanic method. For the characterization, the IR vibration spectroscopy, NMR in case of coupling and shielding constant were calculated. The Quantitative Structure Activity Relation (QSAR) properties of molecules like charge density, surface area grid, volume, LogP, polarizability, refractivity, molecular mass were determined using the HyperChem 8.0.10 program. Using the thermophysical and QSAR data, the IC50 and pHIC50 (-logIC50) was developed which is referred as biological activity parameter.
Batch : B SECTION A :-2 Marks Q1: What is QSAR ? Ans1:-In QSAR modeling, the predictors consist of physico-chemical properties or theoretical molecular descriptors of chemicals; the QSAR response-variable could be a biological activity of the chemicals. QSAR models first summarize a supposed relationship between chemical structures and biological activity in a data-set of chemicals. Second, QSAR models predict the activities of new chemicals.
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