1ZNJ | pdb_00001znj

INSULIN, MONOCLINIC CRYSTAL FORM

PDB DOI: https://doi.org/10.2210/pdb1ZNJ/pdb

Classification: HORMONE
Organism(s): Homo sapiens
Expression System: Saccharomyces cerevisiae
Mutation(s): No

Deposited: 1997-09-23 Released: 1998-01-28
Deposition Author(s): Turkenburg, M.G.W., Whittingham, J.L., Turkenburg, J.P., Dodson, G.G., Derewenda, U., Smith, G.D., Dodson, E.J., Derewenda, Z.S., Xiao, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Work:
0.178 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.5 of the entry. See complete history.

Literature

Structure Determination and Refinement of Two Crystal Forms of Native Insulins

Turkenburg, J.P., Whittingham, J.L., Derewenda, U., Derewenda, Z.S., Dodson, E.J., Dodson, G.G., Smith, G.D., Xiao, B.

To be published.

Macromolecule Content

Total Structure Weight: 35.77 kDa
Atom Count: 2,755
Modelled Residue Count: 303
Deposited Residue Count: 306
Unique protein chains: 2

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
INSULIN	A, C, E, G, I A, C, E, G, I, K	21	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P01308 (Homo sapiens) Explore P01308 Go to UniProtKB: P01308
PHAROS: P01308 GTEx: ENSG00000254647
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P01308
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
INSULIN	B, D, F, H, J B, D, F, H, J, L	30	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P01308 (Homo sapiens) Explore P01308 Go to UniProtKB: P01308
PHAROS: P01308 GTEx: ENSG00000254647
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P01308
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IPH Query on IPH Download Ideal Coordinates CCD File SDF format, chain M [auth A] SDF format, chain P [auth B] SDF format, chain Q [auth C] SDF format, chain T [auth G] SDF format, chain V [auth I] SDF format, chain W [auth K] SDF format, chain S [auth E] MOL2 format, chain M [auth A] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth C] MOL2 format, chain T [auth G] MOL2 format, chain V [auth I] MOL2 format, chain W [auth K] MOL2 format, chain S [auth E] mmCIF format, chain M [auth A] mmCIF format, chain P [auth B] mmCIF format, chain Q [auth C] mmCIF format, chain T [auth G] mmCIF format, chain V [auth I] mmCIF format, chain W [auth K] mmCIF format, chain S [auth E]	M [auth A] P [auth B] Q [auth C] S [auth E] T [auth G] M [auth A], P [auth B], Q [auth C], S [auth E], T [auth G], V [auth I], W [auth K]	PHENOL C₆ H₆ O ISWSIDIOOBJBQZ-UHFFFAOYSA-N		Interactions Focus chain M [auth A] Focus chain P [auth B] Focus chain Q [auth C] Focus chain S [auth E] Focus chain T [auth G] Focus chain V [auth I] Focus chain W [auth K]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain N [auth B] SDF format, chain R [auth D] MOL2 format, chain N [auth B] MOL2 format, chain R [auth D] mmCIF format, chain N [auth B] mmCIF format, chain R [auth D]	N [auth B], R [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain N [auth B] Focus chain R [auth D]
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain O [auth B] SDF format, chain U [auth H] MOL2 format, chain O [auth B] MOL2 format, chain U [auth H] mmCIF format, chain O [auth B] mmCIF format, chain U [auth H]	O [auth B], U [auth H]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain O [auth B] Focus chain U [auth H]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Work: 0.178 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.23	α = 90
b = 61.65	β = 110.5
c = 48.05	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
CCP4	data reduction
CCP4	model building
PROLSQ	refinement
CCP4	data scaling
CCP4	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 1998-01-28

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 1998-01-28
Type: Initial release
Version 1.1: 2008-03-03
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2021-03-24
Changes: Derived calculations
Version 1.4: 2023-08-09
Changes: Database references, Refinement description
Version 1.5: 2024-11-20
Changes: Data collection, Structure summary

Prepare Data

Validate Data

Deposit Data

Help and Resources

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INSULIN, MONOCLINIC CRYSTAL FORM

Structure Determination and Refinement of Two Crystal Forms of Native Insulins

Entity ID: 1

UniProt & NIH Common Fund Data Resources

Entity Groups

Sequence Annotations

Expand

Entity ID: 2