Winnie Wai-Ying Kam a,b,n , Richard B. Banati a,b,c a Australian Nuclear Science and Technology Organisation, Lucas Heights, Sydney, New South Wales 2234, Australia b Medical Radiation Sciences, Faculty of Health Sciences, University of Sydney, Cumberland, Sydney, New South Wales 2141, Australia c National Imaging Facility at Brain and Mind Research Institute (BMRI), University of Sydney, Camperdown, Sydney, New South Wales 2050, Australia a r t i c l e i n f o Article history: Received 28 February 2013 Received in revised form 16 July 2013 Accepted 16 July 2013 Available online 26 July 2013 Keywords: Mitochondria Nucleus Ionizing radiation DNA RNA Copy number Mammalian cells Radiation response Manganese superoxide dismutase Reactive oxygen species (ROS) Superoxide Common deletion Oxidative phosphorylation (OXPHOS) Electron transport chain p 0 cells a b s t r a c t The current concept of radiobiology posits that damage to the DNA in the cell nucleus is the primary cause for the detrimental effects of radiation. However, emerging experimental evidence suggests that this theoretical framework is insufcient for describing extranuclear radiation effects, particularly the response of the mitochondria, an important site of extranuclear, coding DNA. Here, we discuss experimental observations of the effects of ionizing radiation on the mitochondria at (1) the DNA and (2) functional levels. The roles of mitochondria in (3) oxidative stress and (4) late radiation effects are discussed. In this review, we summarize the current understanding of targets for ionizing radiation outside the cell nucleus. Available experimental data suggest that an increase in the tumoricidal efcacy of radiation therapy might be achievable by targeting mitochondria. Likewise, more specic protection of mitochondria and its coding DNA should reduce damage to healthy cells exposed to ionizing radiation. Crown Copyright & 2013 Published by Elsevier Inc. All rights reserved. Contents Introduction. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 608 Mitochondrial DNA after ionizing radiation stress . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 608 Susceptibility of nuclear and mitochondrial DNA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 609 Common deletionmtDNA 4977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 609 A change in the mitochondrial DNA copy number after ionizing irradiation. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 609 p 0 cells in radiation research . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 610 Mitochondrial function after ionizing radiation stress . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 611 The effects of radiation on the electron transport chain. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 611 The effects of radiation on oxidative phosphorylation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 611 A change in the mitochondrial mass after ionizing irradiation. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 612 Radiation-induced oxidative stress and antioxidant enzyme . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 612 The source of radiation-induced oxidative stress . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 612 The role of manganese superoxide dismutase in radioprotection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 612 The localization of antioxidant enzymes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 613 Contents lists available at ScienceDirect journal homepage: www.elsevier.com/locate/freeradbiomed Free Radical Biology and Medicine 0891-5849/$ - see front matter Crown Copyright & 2013 Published by Elsevier Inc. All rights reserved. http://dx.doi.org/10.1016/j.freeradbiomed.2013.07.024 Abbreviations: OXPHOS, Oxidative phosphorylation; PGC-1, Peroxisome- proliferator-activated receptor- coactivator 1; ROS, Reactive oxygen species n Corresponding author at: Australian Nuclear Science and Technology Organisation, Lucas Heights, Menai, Sydney, NSW 2234, Australia. Fax: +612 9717 9262. E-mail addresses: wik@ansto.gov.au, winikam@gmail.com (W.W.-Y. Kam). Free Radical Biology and Medicine 65 (2013) 607619 Mitochondria, the cell nucleus, and late ionizing radiation effects. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 613 Signal propagation between mitochondria . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 613 Signal propagation between mitochondria and the cell nucleus . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 614 Delayed increase in radiation-induced mitochondrial oxidative stress. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 614 Mitochondrial dysfunction and late radiation effects . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 614 Outlook . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 615 Acknowledgments. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 616 References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 616 Introduction The main target of ionizing radiation damage is believed to be the DNA in the cell nucleus [1]. However, the validity of the current radiation damage models has been challenged [2]. The discovery of nontargeted phenomena, such as radiation-induced genomic instability in the progeny of cells that survive after irradiation [3,4] and bystander effects on cells that have not directly been exposed to radiation [5], call this central dogma of radiation biology further into question [1]. There are reports of the effects of radiation on cell organelles other than the nucleus [615]. It has been suggested that these extranuclear effects are not subsequent to nuclear responses to radiation but are instead due to the direct effect of radiation on other organelles [12,13,16]. Mitochondria may account for up to 30% of the total cell volume (e.g., in lymphocytes [17]). Notably, mito- chondria are the only sites where extranuclear DNA resides [1820]. Ionizing radiation can induce various lesions in the circular mito- chondrial DNA, such as strand breaks [21], base mismatches [22], and large deletions [23], which are also observed in nuclear DNA [10,24,25]. Therefore, mitochondria are likely to be a major target of ionizing radiation in addition to the cell nucleus [26,27]. Ionizing radiation alters mitochondrial functions [28,29], increases mitochondrial oxidative stress [3033], and induces apoptosis [3437]. Radiation causes specic mitochondrial gene expression changes that are related to cell survival [38], and mitochondria have been reported as the primary target for radiation-induced apoptosis [39]. These organelles may also have a role in radiation-induced intra- [40] and intercell [8,4143] signaling. Furthermore, a subcellular proteomic analysis revealed that proteins involved in processes such as energy metabolism and antioxidant response are regulated after ionizing radiation exposure in vivo [44]. The known involvement of mitochon- dria in these responses/processes, therefore, suggests a role of mitochondria in the radiation response. Notably, the aforementioned mitochondrial responses cannot be fully accounted for in the current model of radiation effect estimation, which predominantly focuses on the cell nucleus and its genetic material [17,45]. The number of studies investigating the effects of ionizing radiation on the mitochondria is far less than that on the cell nucleus. Specically, a citation analysis using Web of Science on the published literature from 1990 to 2013 shows that there are 9 times more original Articles with the keywords nuclen AND ionizing radia- tion AND DNA damage NOT nuclear energy (2214 results), than with the keywords mitochondrn AND ionizing radiation AND DNA damage NOT nuclear energy (246 results) (Fig. 1). In this review, we summarize some of the reported mitochondrial responses to ionizing radiation and point to some avenues for future investiga- tion of the role of mitochondria in the induction of the overall cell response to ionizing radiation. Mitochondrial DNA after ionizing radiation stress The genetic information of an organism is mostly encoded by the DNA inside the cell nucleus [46]. Some other vital genes are encoded by DNA stored inside the mitochondria. Mitochondrial DNA contains 13 genes which code for the subunits of the electron transport chain enzyme complexes (Complexes I, II, III, and IV) and the ATP synthase [1820]. These enzymes are important for respiration, adenosine triphosphate (ATP) synthesis, and the regulation of many cellular pathways within the cell [47]. Changes in the mitochondrial DNA content, measured as the mitochondrial to nuclear DNA (or protein) ratio, can be used as a readout to measure drug [48] or radiation [49] response, for mitochondrial disease screening [50,51], mitochondrial dysfunction [52], and fetal developmental assessment [53]. Furthermore, mito- chondrial DNA is commonly used for evolutionary analysis because it evolves 10 times faster than the nuclear DNA of the same organism [54]. There is an unequivocal link between mitochondrial genetic variations and the onset of disease [5563]. The level of mitochon- drial DNA mutation is thus suggested as a marker for cancer malignancy [60,6467]. Mitochondrial DNA genetic variation has also been employed for assessing interindividual radiosensitivity. Higher levels of Fig. 1. Citation analysis of published literature. A citation analysis performed on 22 May 2013, through Web of Science/Thomas Reuters, using keywords (1) nucle* AND ionizing radiation AND DNA damage NOT nuclear energy (black bars) versus (2) mitochondr* AND ionizing radiation AND DNA damage NOT nuclear energy (white bars) as Topic for All Years. Only Articles (a document type with original scientic ndings) were included into the analysis. The number of papers published in each year is shown. W.W.-Y. Kam, R.B. Banati / Free Radical Biology and Medicine 65 (2013) 607619 608 mitochondrial DNA point mutations and deletions were seen in patients who received whole body radiation and chemotherapy compared to the control subjects [68]. A high level of mitochondrial DNA sequence variation was observed in nasopharyngeal carcinoma patients who later developed moderate to severe deep tissue brosis as a late complication of radiation therapy. In contrast, the patients with no or minimal brotic reactions were those with low levels of mitochondrial DNA sequence variations [69]. Thus, mitochondrial DNA changes can be used in the assess- ment of evolutionary and pathological changes, as well as the analysis of the effects of radiation. Susceptibility of nuclear and mitochondrial DNA The susceptibility of nuclear and mitochondrial DNA to various stresses has been investigated. Backer and Weinstein showed that mitochondrial DNA developed more covalent modications than nuclear DNA when treated with a carcinogenic derivative of benzo [a]pyrene [70]. Yakes and Van Houten also observed that the mitochondrial genome was more prone to oxidative damage and was characterized by a reduced ability for repair compared to nuclear DNA. They concluded that mitochondrial DNA is a critical target for reactive oxygen species (ROS) [71]. In addition to its greater sensitivity to chemically induced oxidative stress, mitochondrial DNA has also been shown to be more susceptible than its nuclear counterpart to ionizing radiation damage. Richter et al. directly irradiated mitochondria isolated from rat livers using gamma radiation (150 Gy). They observed a 6-fold higher amount of 8-hydroxydeoxyguanosine (oxidized base) per unit mass in mitochondrial DNA than nuclear DNA from the same liver [72]. May and Bohr found that approximately 2 times more gamma radiation-induced (560 Gy) strand breaks could be detected in mitochondrial compared to nuclear DNA. In addition, the amounts of lesions repaired in the nuclear and mitochondrial DNA within the study period (2 h) were 80 and 25%, respectively [73]. Furthermore, Yoshida et al. reported a delayed (24 to 72 h postirradiation) increase in 8-hydroxy- deoxyguanosine lesions in the mitochondrial, but not the nuclear, DNA when A7r5 cells (rat smooth muscle cells) were irradiated with 5 Gy of gamma radiation [74]. Although mitochondrial DNA only accounts for 0.25% of the total cellular DNA [20], the whole mitochondrial DNA (except D-loop) consists of genes for protein synthesis [18,19]. In contrast, the protein coding portion of nuclear DNA is only about 1% of the remaining 99.75% of the total cellular DNA [46]. Therefore, a genetic defect leading to direct biological effects is more likely to happen within the coding regions of the mitochondrial DNA. In addition, mitochondrial DNA lacks histone protection [72] and an efcient DNA repair system [7578]; hence more unrepaired lesions are likely to accumulate. Common deletionmtDNA 4977 A region of the mitochondrial DNA known as mtDNA 4977 or the common deletion, i.e., from nucleotide position 8470 to 13446, is a region prone to deletion and is associated with a number of pathologies [51,7982] and with aging [68,83,84]. The relationship between the common deletion and the radia- tion dose has been examined. Schilling-Toth et al. used human broblast cell lines and primary broblast cultures to show that the common deletion level increased with doses from 0.1 to 10 Gy (after 72 h postirradiation). Interestingly, they observed hypersen- sitivity at a low dose (0.05 Gy) [85]. A nonlinear relationship between the common deletion level and the radiation dose was also observed by Murphy et al. in HPV-G cells (derived from human neonatal foreskin transfected with the HPV-16 virus); these cells showed a higher frequency of the common deletion at low (0.005 Gy) rather than high (5 Gy) radiation doses when assayed 96 h after gamma irradiation [86]. The temporal prole of the occurrence of the common deletion after radiation exposure (5 Gy; X-radiation) was examined by Wang et al. using Hep G2 cells (human liver hepatocellular cells) and subcell lines generated by long-term X-ray treatment (0.5 Gy, twice daily, >4 years). The frequency of the common deletion peaked at 24 to 48 h, followed by a sharp decrease; the common deletion was undetectable after 10 days in their tested cell lines. In addition, they reported that the common deletion was only detectable in the apoptotic/dead cells, but not the viable ones. They also discovered a novel mitochondrial DNA deletion region between nucleotide position 8435 and 13,368 and named this region the 4934del; this deletion was specic to ionizing radiation exposure in their cell system [87]. Furthermore, the relationship between the frequency of the common deletion and the radiosensitivity in vitro was explored. Kubota et al. reported that the frequency of the common deletion (0.5 to 10 Gy of X-radiation; 72 h postirradiation) depended on the inherent cellular radiosensitivity among the tested SQ-20B, SCC-61 (human squamous carcinoma cells) and AT5BIVA cells (derived from SV-40 transformed broblasts of an ataxia-telangiectasia patient) [88]. Prithivirajsingh et al. tested their normal broblast cell lines, dermal broblasts from human subjects, ataxia telangiectasia lines, Kearns Sayre syndrome lines, glioblastoma lines with or without DNA-PK deciency, and colon carcinoma lines. Although they did observe an increase in the common deletion after administering a radiation dose (2 to 20 Gy of gamma radiation; 72 h postirradiation), the level of the increase varied and showed no correlation with radiosensitivity among their tested samples [89]. In vivo, Rogounovitch et al. reported a greater frequency of mitochondrial deletion in radiation-associated post-Chernobyl papil- lary thyroid carcinoma than in sporadic cases [23]. This conclusion was based on a comparison of Russian (residents of radionuclide- contaminated regions after the Chernobyl fallout) and Japanese (control) subjects, who might have different baseline levels of mitochondrial deletion due to differences in the environmental ultraviolet background in different geographical locations [84]. Wen et al. used human peripheral blood lymphocytes and found a dose-dependent decrease in the common deletion in subjects with total body irradiation (4.5 or 9 Gy; X-radiation) compared to the unirradiated controls. As previously suggested [87], the authors explained that radiation might cause lymphocytes to differentiate into two populations, one with a high frequency of the common deletion, which would be more prone to apoptosis, one with a low frequency of the common deletion, which would be more radio- resistant. A sample mixture with a high percentage of apoptotic cells might have led to the seemingly high frequency of the common deletion measured in other studies [90]. A change in the mitochondrial DNA copy number after ionizing irradiation Yoneda et al. pointed out that polymerase chain reaction (PCR) is more sensitive than conventional Southern blotting in detecting mitochondrial DNA damage because the latter involves washing and transfer steps that could elute the lesions from the analysis [91]. Moreover, with specic primers to amplify mitochondrial genes, a reduction in PCR product yield indicates a loss in mitochondrial DNA integrity [9295], and this principle can be used to assess the damage induced by ionizing radiation [25]. In contrast, an increase in the PCR product yield suggests an increase in the mitochondrial DNA copy number. An increase in the mitochondrial DNA copy number was observed in response to oxidative stress in a yeast model [96]. Similar observations have been reported in in vitro and in vivo mammalian systems after ionizing irradiation. W.W.-Y. Kam, R.B. Banati / Free Radical Biology and Medicine 65 (2013) 607619 609 In vitro, Murphy et al. showed an up to 2-fold increase in the mitochondrial DNA copy number after 0.5 Gy of gamma irradiation in HPV-G cells followed by 96 h of recovery [86]. They later used qPCR and again showed a 1.3-fold increase in the mitochondrial DNA copy number in the same cell system under the same experimental procedure [97]. Wang et al. reported a postponed increase in the mitochondrial DNA copy number (24 h to 45 days) in their Hep G2 cell line and its derivatives after being exposed to 5 Gy of X-radiation. The level of the mitochondrial DNA increase varied among the different cell lines and uctuated during the examination period [87]. Kulkarni et al. exposed normal B-lymphoblastoid cells and cell lines with either Leigh's syndrome or Leber's optic atrophy to X-radiation between 0.5 and 4 Gy and observed an increase in the mitochondrial DNA copy number (up to 30%) 24 h after the exposure [38]. Zhou et al. also reported an increase in the mitochondrial DNA copy number (up to 70%) in MCF-7 cells after the administration of 0.05 to 4 Gy of X-radiation followed by 4 to 72 h of recovery [98]. In vivo, the mouse brain and spleen tissues showed an increase in the mitochondrial DNA copy number after 24 to 96 h of recovery subsequent to a 3 Gy gamma-irradiation [99]. The mouse small bowel and bone marrow tissues also showed a mitochondrial DNA copy number increase after gamma-irradiation. The effect appears to be tissue-independent and increases with the dose (2, 4, 7 Gy) and recovery time (24, 48 h) [100]. Using 10 Gy of X-radiation, an increase in the mitochondrial DNA copy number was again observed in the murine liver, skeletal muscle, and brain when assayed at 1 to 72 h postirradiation [101]. One day after 10 Gy of total body X-radiation, a 3-fold increase in the mitochondrial DNA copy number in mice spleen cells compared to the control was observed. The authors suggested that mitochondrial DNA replication was activated [102]. Using periph- eral blood lymphocytes from acute lymphoblastic leukemia patients, Wen et al. reported that there was an average 2-fold increase in the mitochondrial DNA copy number 24 h after the patients received total body irradiation (4.5 or 9 Gy; X-radiation) [90]. A mitochondrion contains multiple copies of its genome [103]. The proper control of the mitochondrial DNA copy number is believed to be important for normal cell function [104]. An increase in the mitochondrial DNA copy number after radiation stimulation, termed mitochondrial polyploidization [99], is believed to be a compensa- tory mechanism [105] or an adaptive response of mitochondria to maintain function in postirradiated cells [23,97] and malignantly transformed progeny that survive after radiation exposure [106]. The benet of such an increase in the mitochondrial DNA copy number postirradiation is under debate. It has been proposed that DNAprotein complexes might shield some mitochondrial DNA molecules from direct radiation-induced ROS damage [99]. Such intact or partially damaged mitochondrial DNA might then replicate to compensate for the loss and to maintain mitochondrial function [49,51,90,99,100]. However, the increase in the mitochondrial DNA copy number was found to be correlated with oxidative stress levels in human leukocytes [107]. Thus, an increase in the mitochondrial content could be a transient gain that later might strain the cells as more resources are needed to support this high proliferation and cope with the subsequent increase in ROS [108]. p 0 cells in radiation research The role of mitochondrial DNA in the cellular response to radiation has been extrapolated by investigating p 0 cells, i.e., cells without mitochondrial DNA derived from a cell line containing mitochondria. p 0 cells can be generated by long-term, low dose treatment of ethidium bromide [109], or enzymatically using Table 1 Radiation responses of p 0 cells oFN>mitochondrial membrane potential. Reference Cell type Cell type Dose (Gy) Type of radiation Changes relative to parental cells or controls after radiation exposure Cell survival Cell cycle Cell growth Micronucleus formation DNA damage ROS production ATP content [175] 701.2.8C Human broblast cells 2 to 8 Gamma No change n/a n/a n/a n/a n/a n/a [117] 701.2.8C Human broblast cells 2 to 8 Gamma No change n/a n/a n/a n/a n/a [176] 701.2.8C & 143. TK- Human broblast cells & human osteosarcoma cells 2 to 10 Gamma No change n/a n/a No change (DNA fragmentation) n/a n/a n/a [115] 143.TK- Human osteosarcoma cells 2 to 8 Gamma No change n/a No change (cell doubling time) n/a n/a n/a n/a [116] 143.TK- Human osteosarcoma cells 2 to 8 Gamma No change n/a n/a n/a n/a n/a [34] 143.TK- Human osteosarcoma cells 1 to 10 Gamma n/a n/a n/a n/a n/a No change No change n/a [177] Hela Human cervical cancer cells 2 to 8, 20 Gamma Delayed G2 checkpoint arrest and a decreased ability to recover from G2 arrest n/a n/a n/a n/a n/a [8] Hela Human cervical cancer cells N/a Helium ion microbeam n/a n/a n/a n/a (53BP1 foci formation) n/a n/a n/a [111] Miapaca Human pancreatic tumor cells 2 to 6 X ray n/a G2 checkpoint activation together with cyclin B1 (for mitosis) and CDK1 (for cell cycle progression) increase minimal change n/a n/a n/a n/a n/a W.W.-Y. Kam, R.B. Banati / Free Radical Biology and Medicine 65 (2013) 607619 610 mitochondrial-targeted restriction endonuclease to avoid the mutagenic effect of ethidium bromide [110]. Although p 0 cells appear to be a useful tool to assess the mitochondrial response to radiation, conicting results have been reported (Table 1); these disparities are likely due to differences in the cell origin or whether the parental cells have been virally transduced [111]. Yet, the results were still conicting even when the same kind of p 0 cells was used (generated from 701.2.8C cells; studies by Yoshioka et al. (2004) and Tang et al. (1999)). The observed discrepancies in the radiation responses of p 0 cells could be due to varying levels of remnant mitochondrial DNA or mitochondrial function. One study found no evidence of mitochondrial DNA in their p 0 cells (Fig. 1 of Kawamura et al.), while others studies deemed the level of mitochondrial DNA nonnegligible(Fig. 1A of Cloos et al. (2009) and Fig. 5A of Tartier et al. (2007)). Moreover, most of the mitochondrial proteins in all enzyme complexes are encoded by nuclear DNA (77 subunits) [112]. p 0 cells, therefore, may not be the best model to assess the role of mitochondria in cellular radiation response. Specically, p 0 cells could still retain Complex II (solely encoded by nuclear genes) activity [113,114]. Indo et al. observed that p 0 cells responded to electron transport chain inhibitors; this observa- tion suggested that the function and electron ow of the electron transport chain may not have been completely abolished [114]. Furthermore, a shift in the energy metabolism from OXPHOS (OX, i.e., oxidation/respiration; PHOS, i.e., phosphorylation/ATP synthesis) to glycolysis (anaerobic respiration) in p 0 cells [109,113] could likely reduce the proliferation rate of these cells [115117] and, therefore, may indirectly lead to differences in their responses to radiation. Notably, the absence of functional mitochondria in p 0 cells may induce other nonmitochondrial changes, which could in turn affect their radiation responses [111] and complicate the response analysis [118]. Park et al. showed that p 0 cells generated from a wide range of cell lines were characterized by a 21-fold higher expression of the manganese superoxide dismutase gene and were more resistant to ROS when compared to their parental cells. This increase in the mitochondrial antioxidant activity in p 0 cells may allow them to adapt and establish a new equilibrium of the superoxide levels, thus making p 0 cells less suitable as models for ROS investigations [119]. In addition, Ivanov et al. showed that p 0 cells generated from human skin broblasts differ from their parental cells in terms of their mitochon- drial function, oxygen consumption, mitochondrial membrane poten- tial, nuclear-encoded mitochondrial protein expression, and NF-B/ STAT3 signaling pathways (for cellular response); the parent cells and the p 0 cells also differed in the expression of 2100 genes [120]. Mitochondrial DNA is more vulnerable to ionizing radiation damages than its nuclear counterpart. Ionizing radiation induces nonlinear and cell-type-specic damages directly to mitochondrial DNA, which may increase its copy number as a compensatory response to counteract a loss in mitochondrial function. The role of mitochondrial DNA in the radiation response has been studied using p 0 cells. However, these cells are intrinsically different from their parental cells. In addition, the use of pseudo p 0 cells, which are dened as cells with a reduced but nonzero amount of mitochondrial DNA, in some studies limits the applic- ability of p 0 cells in elucidating the role of mitochondrial DNA in the radiation response. Mitochondrial function after ionizing radiation stress The effects of radiation on the electron transport chain Pearce et al. irradiated isolated bovine heart mitochondria with 50 Gy of gamma radiation and showed an activity inhibition in Complexes I and III [121]. Barjaktarovic et al. locally irradiated (2 Gy; X-radiation) the heart of C57BL/6 N mice and observed a delayed (4 weeks postirradiation) and partial deactivation of Complex I (32%) and Complex III (11%), a decreased succinate- driven respiratory capacity (13%), and an increased level of ROS [122]. Yoshida et al. also reported a 50% reduction in Complex I activity in their rat A7r5 cells 12 h after 5 Gy of gamma irradiation. The observed changes were associated with the delayed ( 24 h postirradiation) increase in mitochondrial ROS and the subsequent mitochondrial DNA oxidation and growth inhibition [74]. Nugent et al. showed a cell-specic change (CHO-K1: derived from ovary of the Chinese hamster; HPV-G cells), either a decrease or an increase, in OXPHOS enzyme activities soon (4 h) after irradiation. More importantly, the activity of some of the examined enzymes (Complexes II, III, IV, and ATP synthase) did recover upon 12 to 96 h of recovery [97] (see section 3.2). Chinese hamster lung broblast cells with Complex II mutated (single-base mutation that truncates 33 amino acids from the COOH- terminal integral membrane portion of succinate dehydrogenase subunit C protein) are found to have a higher level of superoxide and hydrogen peroxide [123]. Later, Aykin-Burns et al. reported that these cells were more radiosensitive and affected by poorer survival when compared to their parental cells after low dose irradiation (5 cGy to 50 cGy; gamma radiation). The above phenomenon could be reversed when the mutant cells were made to overexpress wild- type human succinate dehydrogenase subunit C [124]. These results show that the electron transport chain complexes (including the nuclear-encoded Complex II) and ATP synthase directly respond to ionizing radiation. Because these complexes are involved in electron transport within the electron transport chain and ATP synthesis, processes associated with OXPHOS are likely to be affected. The effects of radiation on oxidative phosphorylation Hall et al. performed a whole body irradiation (8.4 Gy; X-radia- tion) in rats and reported that phosphorylation was decreased by 20% 1 h postirradiation and remained low for the next 12 h. The functionality of OXPHOS appeared to return to baseline after 24 h of recovery [125]. In a similar but modied experiment, Hwang et al. directly irradiated (5 to 20 Gy; gamma radiation) the murine liver which was squeezed out through an upper abdomen opening and assayed for mitochondrial respiratory function immediately after irradiation. They noted a signicant decrease in both state 3 and state 4 respiratory rates as the dose of radiation increased. However, they did not nd a signicant change in the adenosine 5-diphosphate/oxygen ratio after irradiation [28]; this nding is in contrast to the ndings of Hall's report. The authors suggested that the measured effect of radiation on energy metabolism might vary at different sampling times [28]. In addition, rats were subjected to whole body irradiation in Hall's study [125], but the liver was directly irradiated in Hwang's experiment [28]. The difference in the irradiated region and hence the overall systemic involvement might lead to differences in the measured radiation response. Yoshida et al. showed that human osteosarcoma cells underwent a 20% reduction in ATP content 1 h after 8 Gy of gamma radiation, followed by a full recovery in approximately 3 h [116]. Arguably, the effect of radiation on OXPHOS could be a cell-specic event, as suggested by Nugent et al. who showed that the change in cellular oxygen consumption after 5 Gy of gamma irradiation varied between their CHO-K1 and HPV-G cells upon recovery (4 to 24 h) [108]. These studies show that ionizing radiation, to some extent, alters oxidation and/or phosphorylation; however, these changes could later be recovered. W.W.-Y. Kam, R.B. Banati / Free Radical Biology and Medicine 65 (2013) 607619 611 A change in the mitochondrial mass after ionizing irradiation Using MitoTracker Green (marker for mitochondria) and uor- escent microscopy, it was shown that 0.005 to 5 Gy of gamma irradiation could lead to a 1.5- to 3.8-fold increase in the mito- chondrial mass in two cell lines of different origin (CHO-K1 and HPV-G cells) after 4 to 96 h of recovery [108]. Wang et al. also found a 3.2-fold increase in the mitochondrial mass in their Hep G2 cells 24 h after being exposed to 5 Gy of X-radiation [87]. Using Mitotracker Green and uorescence-activated cell sorting (FACS) analysis, Zhou et al. reported a 1.4- to 1.5-fold increase in the mitochondrial mass in MCF-7 cells (human breast adenocarci- noma cell line) 4 h after 0.05 and 0.1 Gy of X-radiation exposure [98]. Using the same technique, Dayal et al. noted a 1.5- to 2-fold increase in the mitochondrial mass in both genetically stable and unstable clones isolated from irradiated CHO cells (10 Gy; X-radia- tion). More importantly, they also showed a decrease in the mitochondrial membrane potential and an increase in oxygen consumption, while the ATP levels were unchanged. These authors suggested that radiation causes mitochondrial dysfunction, and an increase in the mitochondrial mass is needed to maintain cellular energy status [126]. The increase in mitochondrial mass is likely to be associated with an increase in the total amount of mitochondrial DNA. However, this assumption has been challenged [51]. Mitochondrial DNA replication is independent of and seems to be uncoupled from mitochondrial ssion [103]. Because mitochondria contain proteins synthesized from both nuclear and mitochondrial DNA [61,112], the nuclear-encoded proteins can still be produced even though the mitochondrial DNA is defective. This disproportional synthesis of nuclear-encoded proteins may contribute to the increase in mitochondrial mass, even when the mitochondria may lack mitochondrial DNA [51]. However, it was later shown that the temporal [98] and relative [87] increase in the mitochon- drial mass, at least when stimulated by X-radiation, was associated with the increase in mitochondrial DNA in vitro. Ionizing radiation causes mitochondrial dysfunction by altering the activity of the electron transport chain complexes and ATP synthase, hence OXPHOS. Mitochondria seem to respond to such changes by increasing their DNA copy number (see section 2.3). Whether the benet of such an increase is the restoration of mitochondrial function is yet to be conrmed. Interestingly, we have observed an increase in the expression of 18 mitochondrial genes as well as peroxisome-proliferator-activated receptor- coactivator 1 (PGC-1; a regulator of mitochondrial gene expres- sion) in mammalian cells after gamma irradiation (unpublished data). The increase in mitochondrial content (DNA and RNA) postirradiation may thus lead to an overproduction of mitochond- rially encoded subunits. This could cause an imbalance in the composition of the electron transport chain complexes and the ATP synthase, therefore, impairing the mitochondrial function and leading to an increase in oxidative stress. Notably, PGC-1 is also associated with mitochondrial proliferation/number [127]. The increase in PGC-1 postirradiation might relate to the increase in mitochondrial mass/number (see section 3.3) which further stresses the cell due to an accompanying increase in mitochondrial oxidative stress. Radiation-induced oxidative stress and antioxidant enzyme The source of radiation-induced oxidative stress Electrons may leak during transport within the electron trans- port chain. The partial reduction of an oxygen molecule by a free electron generates a superoxide anion, which is the precursor of most ROS [128130]. Slane et al. have thoroughly characterized the type of ROS released in mitochondrially impaired cells (Chinese hamster lung broblast cells with mutated Complex II subunit C). Their ow cytometry and high-performance liquid chromatogra- phy (HPLC) results demonstrated the oxidation of dihydroethi- dium (nonuorescent) to 2-OH-ethidium (uorescent) in these mutated cells, suggesting the increase in mitochondrial superoxide level [123]. Mitochondria, therefore, produce most of the ROS (likely superoxide) under physiological and abnormal conditions, making them constantly under high oxidative stress [71]. Notably, the superoxide anion was found to be the major cause of radiation- induced apoptosis, at least in the peritoneal resident macrophages of C3H mice [131]. The role of mitochondria in radiation-induced oxidative stress, thus, is one of the major study areas in radiation research. 2,7-Dichlorouorescein diacetate and hydroethidine, as well as their derivatives, are the dyes commonly used to detect oxidative products, including those induced by ionizing radiation [25,31,33,34,74,116,132136]. However, the application of these dyes is limited because they cannot differentiate the source of the oxidative stress. 2,7-Dichlorouorescein and its diacetate form are found to produce ROS when oxidized and generate more ROS during the detection process [137]. This assay may also register ROS gener- ated in the extracellular medium as those formed intracellularly by ionizing radiation and is reported to be dependent on the concentration of serum in the medium during irradiation [138]. When hydroethidine is oxidized by superoxide, it does not change to ethidium, which was thought to bind to DNA and lead to an enhancement of uorescence [139]. A number of dyes are used for radiation-induced oxidative stress detection at the subcellular level. Motoori et al. used dihydrohodamine 123 to detect mitochondrial ROS and showed a radiation-induced (15 Gy; X-radiation) elevation in mitochon- drial ROS in their control HLE cells (human hepatoma cells), but not in cells overexpressing an enzyme that breaks down mito- chondrial superoxide radicals. These authors suggested that mito- chondria are one of the major sites of ROS production and that superoxide radicals are the primary radicals that give rise to the elevation in ROS levels upon irradiation [30]. Indo et al. used confocal microscopy to observe an instant, gradual increase in ROS levels, which peaked and then declined at the 2nd hour, in their HLE cells after 18.8 Gy of X-radiation. They also demonstrated the colocalization of hydroxyphenyl uorescein (marker for hydroxyl radicals) and MitoTracker in the irradiated cells, thus conrming that the ROS were generated by the mitochondria. Moreover, their electron spin resonance spectro- scopy results veried that the ROS were hydroxyl radicals and superoxide anions [140]. The role of manganese superoxide dismutase in radioprotection Manganese superoxide dismutase is an enzyme that resides within the mitochondria; this enzyme is responsible for the dismutation of highly reactive superoxides to less toxic forms, i.e., water and hydrogen peroxide [129,130]. Oberley et al. used mouse heart tissues and showed that radiation (absorbed dose of 7.7 Gy to the heart; X-radiation) only induced the activity and protein expression of manganese superoxide dismutase, but not its cytosol counterpart, the Cu/Zn superoxide dismutase [141]. The time- and dose-dependent increase in the mRNA expression of manganese superoxide dismutase was also observed by Akashi et al. in irradiated human embryonic lung broblasts [142]. These results suggest the likely involvement of manganese superoxide dismutase in modulating the cellular response to daily and radiation-induced oxidative stress both in vivo and in vitro. W.W.-Y. Kam, R.B. Banati / Free Radical Biology and Medicine 65 (2013) 607619 612 Cells overexpressing manganese superoxide dismutase were used to further examine the role of this enzyme in the radiation response. Hirose et al. overexpressed manganese superoxide dismutase in CHO cells (Chinese hamster ovary cells) and reported the positive effect of this enzyme on cell survival after gamma irradiation (1 to 11 Gy). These authors hypothesized that the radioprotective role of manganese superoxide dismutase is prob- ably tied to its ROS scavenging capability [143]. Later, Motoori et al. reported that HLE cells transfected with manganese superoxide dismutase were more radioresistant (15 Gy; X-radiation), as shown by the lower level of apoptosis, mitochondrial ROS produc- tion, and membrane lipid peroxidation [30]. Hosoki et al. per- formed a microarray experiment to compare gamma-irradiated or unirradiated HeLa cells (human cervical cancer cells) overexpres- sing manganese superoxide dismutase or a control plasmid. Cells overexpressing manganese superoxide dismutase had a high endogenous level or a greater radiation-stimulated upregulation of genes associated with the cell cycle and stress response [33]. These reports provide insights for future investigations of the potential use of manganese superoxide dismutase in radiation protection. Epperly et al. delivered an adenovirus-carried manganese superoxide dismutase transgene into their athymic nude mice via intratracheal injection. After X-radiation treatment (850 to 950 cGy), these animals were found to have a lower expression of cytokine mRNA (IL-1, TGF-, TNF-), as well as organizing alveo- litis/brosis development, when compared to the controls [144]. They also conrmed that the IL-1 mRNA level correlates with the acute pneumonitis phase and that the late elevations of TNF-, TGF-1, and TGF-2 are associated with the onset of organizing alveolitis/brosis and mortality [145]. They later applied different modes of transgene delivery, such as plasmid/liposomes [146] and a minicircle plasmid [147], to further explore the potential of manganese superoxide dismutase in radioprotective gene therapy. The localization of antioxidant enzymes The importance of the mitochondrial localization of manganese superoxide dismutase in modulating the stress response has been examined by a number of groups. Hirai et al. found that the mitochondrial ROS level and membrane lipid peroxidation, which was induced by hypoxia and reoxygenation treatment, were suppressed only if the manganese superoxide dismutase was properly expressed within the mitochondria (i.e., a transgene with a mitochondrial targeting signal) [148]. Other than hypoxia and reoxygenation stress, Epperly et al. used genetic approaches to demonstrate the importance of the mitochon- drial localization of superoxide dismutases in protecting cells from radiation-induced oxidative stress. In vitro, they reported that when superoxide dismutases, including Cu/Zn superoxide dismutase, which is normally expressed within the cytosol, were expressed within the mitochondria, their 32Dcl3 cells (murine myeloid cell line) showed better survival and less apoptosis relative to the control cell lines after gamma irradiation. However, their in vivo results showed that only some of the mice injected with mitochondrially targeted superoxide dismutase, manganese or Cu/Zu type, were protected from radiation- induced esophagitis (35 Gy; X-radiation). The authors explained this observation by suggesting the presence of cell phenotype-specic transgenic effects for manganese superoxide dismutase in vivo [149]. Furthermore, this group also demonstrated the ability of mitochond- rially targeted catalase to confer radioprotection. In vitro (32Dcl3 cells) and in vivo (development of alveolitis in mouse lungs by 20 Gy of X-radiation) radioprotection could be seen when catalase was directed into the mitochondria. These authors suggested that mitochondrially targeted catalase could be an additional radioprotector alongside with manganese superoxide dismutase, at least in vitro [150]. Similar results were obtained by other groups. Hosoki et al. showed that radioresistance was conferred only by cells overexpres- sing mitochondrially targeted superoxide dismutase [33]. Indo et al. also noted that authentic manganese superoxide dismutase, but not the one without the mitochondrial targeting sequence, was needed to reduce the level of radiation-induced ROS generation and hence lipid peroxidation and eventual apoptotic cell death [140]. Furthermore, treatment using mitochondrially targeted ROS scavenging enzymes has also been reported to reduce cytotoxicity or to enhance radiation resistance in cells [124,136]. Ionizing radiation induces both intracellular and mitochondrial oxidative stress [32]. Manganese superoxide dismutase and Cu/Zu superoxide dismutase are important for antioxidant defense within the mitochondria and cytosol, respectively. These superoxide dismu- tases (and other antioxidant enzymes) can be genetically modied to have their subcellular localization altered. The change in the level of radiation-induced oxidative stress in different subcellular compart- ment can thus be differentially investigated in cells after expressing such genetically modied antioxidant enzymes. Such enzymes, targeting different organelles, would help to examine the role of different subcellular compartments to the increase in oxidative stress after ionizing radiation exposure. Collectively, these studies establish the importance of the mitochondrial localization of antioxidant enzymes in protecting cells from oxidative stress induced by ionizing radiation. Fluorescent assays have revealed that mitochondria are the major subcellular site of radiation-induced oxidative stress. Transgenic experiments have further conrmed that antioxidant enzymes need to reside within the mitochondria to alleviate the oxidative stress caused by ionizing radiation. Collectively, these ndings suggest the crucial role of mitochondrial ROS (likely superoxide [71]), rather than intracellular ROS, in mediating cellular damages after ionizing radia- tion exposure. Mitochondria, the cell nucleus, and late ionizing radiation effects Signal propagation between mitochondria In addition to the studies that have identied mitochondria as the major source of radiation-induced oxidative stress, there are reports of signal propagation between mitochondria, which can amplify the effects of radiation. Leach et al. reported that about 50% of the wild-type or control plasmid-transfected CHO cells showed a signicant increase in ROS after irradiation (4 Gy; gamma radiation). However, less than 10% of the cells overexpressing calbindin 28 K, a Ca 2+ -binding protein, showed an increase in radiation-induced ROS. They then proposed that mitochondria directly hit by ionizing radiation are subjected to a transition in their permeability. Ca 2+ ions are released and then taken up by adjacent mitochondria, which then depolarize, leading to a subsequent increase in ROS production. Thus, the Ca 2+ ion could act as a signaling molecule in a chain reaction among the mitochondria after irradiation, leading to the propagation and amplication of the ROS signal; this chain reaction would then impact the nucleus [34]. Communication between mitochondria for damage signal propa- gation was also investigated by Brady et al. using rodent cardiomyo- cytes, which are cells with a regular array of mitochondria. The authors noted that laser-beam induced local ROS development and the subsequent mitochondrial permeability transition could spread to adjacent mitochondria. This change was a mitochondrial-potential driven process, mediated via the mitochondrial permeability transi- tion pore, and ROS, as opposed to Ca 2+ ions, appeared to participate in this signal propagation [151]. As discussed above, ionizing radiation W.W.-Y. Kam, R.B. Banati / Free Radical Biology and Medicine 65 (2013) 607619 613 impairs the electron transport chain leading to a persistent elevation in mitochondrial oxidative stress. This imbalance in mitochondrial ROS might form a positive feedback mechanism for more depolariza- tion and greater ROS production, leading to further cell damages, as suggested by the ROS-induced ROS release [152] and mitochon- drial ROS-induced ROS [153] phenomena originally established by Zorov and colleagues. Of note, cardiomyocytes are terminally differentiated, while CHO cells are immortal cells with continuous cell divisions. The difference in material might, in part, contribute to the discrepancy observed between the results from Brady's [151] and Leach's teams [34] associated with the role of Ca 2+ ions in signal propagation between irradiated cells. Signal propagation between mitochondria and the cell nucleus Changes in the functional state of mitochondria can be com- municated to the cell nucleus via mitochondrial retrograde signal- ing to achieve an adaptive cell response to stimulations/stresses [154]. It is, therefore, possible that radiation damage, too, may trigger a mitochondrial-nuclear communication. Tartier et al. showed that a signicant increase in nuclear 53BP1 foci, which is a marker for DNA damage, could be observed in 3 h when the cytoplasmof their HeLa cells was irradiated; such foci could be seen in just 5 min when the nucleus was targeted. They proposed that an additional step is needed to produce a biological response in the cell nucleus from cytoplasmic irradiation [8]. Fisher and Goswami further suggested that mitochondrial ROS could have a role in the regulation of radiation-induced cell cycle checkpoints and overall cellular radiosensitivity, at least in Mia PaCa-2 cells (human pancreatic cancer cells). In their study, they hypothesized that communication between the mitochondria and the nucleus, via radiation-induced mitochondrial ROS signaling, could inuence the cellular response to radiation exposure [136]. Delayed increase in radiation-induced mitochondrial oxidative stress Radiation causes an acute, transient increase in intracellular oxidative stress [32]. The increase in oxidative stress is most likely due to water radiolysis because water constitutes a substantial portion of a cell. Free radicals generated from water usually have a very short life span of only 10 -9 s [155]; yet, a number of studies have reported the persistent increase in oxidative stress after radiation exposure. For example, Tulard et al. used dihydrohodamine 123 and recorded a dose-dependent (1.5 to 7 Gy; gamma radiation), delayed (24 h onward), and persistent (for days) increase in mitochondrial ROS in their SW620 (human colon cells) and SW620IR1 (radiosensitive clone derived from SW620 cells) cells after gamma irradiation. Their results suggest a role for mitochon- dria in the radiation-induced late production of ROS [31]. This study also used 2,7-dichlorouorescein diacetate for intracellular ROS detection. However, this part of their study is not discussed in this review due to the aforementioned uncertainties associated with this dye (see section 4.1). Ogura et al. showed that 10 Gy of X-radiation caused an increase in intracellular ROS, which was associated with the release of cytochrome c from the mitochondria and the induction of apoptosis in A549 cells (adenocarcinomic human alveolar basal epithelial cells). They further used MitoAR, which selectively localizes within mitochondria and reacts with ROS, to show that mitochondria are the source for the late (tested at the 6th hour postirradiation) increase in ROS in their tumor cell model [156]. A more detailed study was performed by Kobashigawa et al. using amino-uorescein and MitoSOX, which are markers for intracellular and mitochondrial ROS, respectively. Using normal human broblast- like cells, they reported that radiation caused a dose-dependent increase in ROS and a difference in the temporal prole of the intracellular and mitochondrial ROS levels upon radiation stimulation (2 to 6 Gy; gamma radiation). They observed an acute increase in intracellular ROS, which subsided in about 24 h, and the levels then rose again and remained high from the 72nd hour onward. The mitochondrial ROS level showed a gentle increase, peaked at the 72nd hour postirradiation, and remained steadily high until the end of the study period (7 days postirradiation) [32]. A recent report by Hosoki et al. also used MitoSOX and demonstrated a delayed elevation of mitochondrial superoxide in HeLa cells upon radiation stimulation (5 Gy gamma radiation; 72 h postirradiation) [33]. A postponed, persistent increase in the mitochondrial ROS level was also observed by Yoshida et al. when irradiated A7r5 cells (embryonic rat thoracic aorta cells) were examined using the MitoSOX assay (5 Gy gamma radiation; from 24 to 72 h postirradiation) [74]. Yamamori et al. exposed A549 cells to 10 Gy X-radiation and similarly observed a delayed (peak at 12th hour postirradiation) increase in oxidative stress; this change was associated with an increase in the mitochondrial membrane potential, mitochondrial respiration, and ATP production. More importantly, they demon- strated a radiation-induced G2/M arrest and showed that cells in that phase featured an increased mitochondrial content (mitochondrial mass and DNA) and a higher intracellular ROS level [157]. Different cell lines were used in the aforementioned studies and may contribute to the discrepancies in the reported ROS production proles. Nonetheless, these reports show that radia- tion causes a late increase in ROS, which are likely to be generated by the mitochondria. Mitochondrial dysfunction and late radiation effects Mitochondria may be permanently impaired after ionizing irradiation, leading to the observed persistent mitochondrial oxidative stress long after the initial exposure. At the mitochondrial DNA level, Schilling-Toth et al. reported that their radiosensitive human broblast cells showed a two- wave pattern of the common deletion in the mitochondrial DNA: the frequency of the common deletion peaked around Day 14 and then returned to the baseline level. This decrease was followed by another peak around Day 49 that persisted until Day 63 after 0.1 or 2 Gy of gamma irradiation. This nding shows that damage to the mitochondrial DNA, which manifests as the common deletion, can be a long-term, persistent event, which the authors dened as radiation-induced instability of the mitochondrial genome [85]. At the functional level, a number of studies have shown a change in mitochondrial function in the progenies of the cells that have survived from ionizing radiation exposure. Kim et al. used genetically unstable clones LS-12 and Fe10-3, which were isolated from GM101115 cells (contain 1 copy of human chromosome 4 in a background of 20 to 24 CHO chromosomes) after 10 Gy of X-ray or iron ions irradiation, respectively. They reported that both cell lines were characterized by higher intracellular ROS levels and lower manganese superoxide dismutase activity as well as a reduced Complex IV activity and hence a defective respiratory pathway [135]. Miller et al. later reported that unstable clones (LS-12, CS-9, 115 cell lines) were characterized by an altered expression of mito- chondrial proteins and an elevated ROS level. Their results suggest a casual association between mitochondrial dysfunction and radiation-induced genome instability [158]. Dayal et al. reported that the relationship between genomic instability and persistent oxidative stress was mediated by hydrogen peroxide [159]. They later observed that their genetically unstable W.W.-Y. Kam, R.B. Banati / Free Radical Biology and Medicine 65 (2013) 607619 614 clones had increased oxygen consumption (CS-9 cells) and elevated Complex II activity, but reduced stability (LS-12 cells) [126]. A comprehensive mitochondrial subproteomic study, together with mRNA and microRNA investigations, was performed by Thomas et al. Their ndings suggested that unstable clones (LS- 12 cells) were likely to have a compromised electron transport chain function. In addition, these cells were characterized by an elevated response to oxidative stress and an upregulated tricar- boxylic acid cycle, which was necessary to maintain cell survival in the case of mitochondrial dysfunction. These responses are likely to be epigenetically regulated and thus constitute a feedback loop leading to genomic instability [160]. Furthermore, it is evident that mitochondrial dysfunction could lead to nuclear damage or tumor development. Choi et al. reported that the mitochondria, Nox1 (gene coding for NAPDH oxidase 1), and JNK (for stress response) are likely to be involved in radiation- induced (2.5 Gy; gamma-radiation) ROS production and hence micronucleus formation [161]. St Clair et al. overexpressed man- ganese superoxide dismutase in C3H10T1/2 cells (mouse cell line with broblastic morphology and functionally similar to mesench- ymal stem cells) and found that these cells were protected from radiation-induced neoplastic transformation [162]. Du et al. used mouse embryonic broblasts and showed that the increase in manganese superoxide dismutase activity was associated with the decrease in ROS production and, more importantly, the suppres- sion of the late (72 h post gamma irradiation) increase in ROS, micronuclei formation, and the subsequent cellular transformation [134]. Furthermore, Zhang et al. showed that malignant trans- formed human small airway epithelial cells, induced by 0.2 to 1 Gy of 4 He ion irradiation, had an increased mitochondrial content and a greater frequency of the common deletion; however, these cells were characterized by a reduction in oxygen consumption, the mitochondrial membrane potential, and Complex II activity [106]. These studies suggest that mitochondrial dysfunction is a likely cause of radiation-induced genomic instability [163], which could propagate to cell progenies/offspring, leading to long-term radia- tion effects including nuclear damage [164]. Ionizing radiation permanently impairs mitochondria, leading to a persistent production of mitochondrial ROS [165]. Mitochondrial ROS are likely to act as signaling molecules for intermitochondrial and mitochondrial-nuclear communication, which might promote subsequent long-term radiation effects. Outlook Here, based on the available experimental data, we infer the effects of ionizing radiation on mitochondria: Mitochondria are more susceptible to ionizing radiation than the nucleus (Fig. 2A). Mitochondrial DNA can be directly damaged, e.g., through mitochondrial DNA deletion. Interestingly, the mito- chondria can cope with such damages, which might lead to Fig. 2. Radiation-induced mitochondrial superoxide mediated nuclear damage. (A) When a cell is exposed to ionizing radiation, its nucleus and mitochondria (DNA- containing sites) are likely to be affected. The mitochondrial genome is of higher genetic information density as compared to that of the nuclear genome; therefore, radiation-induced lesions that could lead to functional changes are more likely to be found in mitochondrial DNA. (B) Regions within the mitochondrial DNA could be deleted upon ionizing radiation exposure, therefore, altering the function of the electron transport chain (ETC) and leading to a persistent mitochondrial superoxide (O 2 - ) production postirradiation. Mitochondria may respond to such damages by increasing the quantity or synthesizing new mitochondrial DNA in order to maintain the mitochondrial function necessary for cell survival. (C) Nevertheless, the radiation-induced superoxide may continue to damage the mitochondrial DNA of that impaired mitochondrion or diffuse to the nearby mitochondrion, both steps similarly cause further mitochondrial dysfunction and hence amplify the amount of mitochondrial superoxide. (D) Furthermore, mitochondrial superoxide may diffuse intracellularly causing damages to other parts of the cells including the cell nucleus (micronuclei formation) and nuclear DNA. W.W.-Y. Kam, R.B. Banati / Free Radical Biology and Medicine 65 (2013) 607619 615 mitochondrial dysfunction, by increasing their quantity and DNA copy number (Fig. 2B). However, more mitochondria might lead to more superoxide production. In addition, the increase in mitochondrial DNA might result in an overproduction of mitochondrial protein. This over- production could alter the activity of the electron transport chain complexes/OXPHOS, leading to an elevated superoxide production. The increase in superoxide in one mitochondrion might diffuse (via an unknown active pathway or passively) to another mito- chondrion (Fig. 2C). This intermitochondrial communication amplies the damage signal and permanently damages the rest of the mitochondria within a cell, resulting in further superoxide production. Impaired mitochondria, after the initial radiation exposure, continue to produce superoxide, which eventually diffuse into the cell nucleus and cause nuclear DNA damage (Fig. 2D). Furthermore, the nuclear lesion produced by this radiation-induced mitochondrial superoxide-mediated nuclear damage, if not properly repaired, might propagate to the cell progenies resulting in secondary cancer development in cells long after the initial radiation exposure. A further theoretical consideration is that radiation-induced damage to mitochondrial DNA may cause mutations or deletions within the mitochondrial genome which could be inherited by the offspring through the maternal germline. Though ndings from a recent report [166] appear to contradict with this concept, a larger study cohort is warranted for a clearer examination on the possibility of transgenerational increase in cancer risk due to mitochondrial abnormality subsequent to ionizing radiation expo- sure to the mother. Likewise, it has been suggested that mitochon- drial superoxide radicals have been a driving factor in the evolutionary move of mitochondrial genetic information into the nucleus [167]. However, it is still a theoretical speculation whether ionizing radiation [168] and the associated oxidative stress may indeed lead to the insertion of mitochondrial DNA fragments into the nuclear genome, and whether such nuclear mitochondrial pseudogenes could disrupt the nuclear genome and contribute to an increase in cancer risk within an exposed individual or even in their offsprings. The reported observations summarized in this review suggest a need for further investigations into the effects of ionizing radiation on mitochondria, including (a) the mechanisms of radiation- induced alterations in mitochondrial electron transport chain stoichiometry, residence time, and accessibility of electrons to mediate increased levels of one-electron reductions of oxygen for the late increase in oxidative stress; and (b) the mechanisms and biological signicance of the change in mitochondrial mass and content in cells after being exposed to ionizing radiation. Echoing a recent review [26], the interactions between the mitochondria and the cell nucleus in response to ionizing irradia- tion are likely to determine short- and long-term radiation effects. For example, how exactly the different nuclear and mitochond- rially encoded subunits of the electron transport chain interact to alter mitochondrial superoxide production, and thus contribute genomic instability, requires further systematic investigation. Furthermore, it is likely that mitochondria are potential targets for radiation protection [169174]. The latter has broad relevance for clinical applications, in the mitigation of environmental or industrial exposure and in space biology. Acknowledgments We thank Mrs. Geetanjali Dhand for her generous assistance in collecting the literature for this review; Dr. Aimee McNarama, for discussing and proofreading the manuscript; and A/Prof Zdenka Kuncic, for discussing the manuscript. References [1] Morgan, W. F. 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