Replication Gizmo

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Replication Gizmo – Jason Bao

Take an image of your completed molecule after replication


THEN label all of the pieces of that molecule
NEXT draw in the replication enzymes/players
FINALLY write out either in sentence form or table diagram that describes the function of
each player
Topoisomerase/Gyrase Enzyme that unwinds/unties the knots that
form in DNA (the supercoiling)
Single stranded binding proteins (ssbp’s) Proteins that bind to the single strands of
DNA and act as a physical barrier to prevent
the DNA from reforming its double helix
DNA Helicase Enzyme that unzips the two strands of the
helix by breaking the hydrogen bonds
between the purines and pyrimidines
Replication Fork Structure that forms when helicase unzips the
DNA of two branches of single stranded DNA
(where the replication of DNA actually
occurs)
DNA Polymerase I Enzyme that removes the RNA primer (“pops
it off”) and replaces it with synthesized DNA,
but leaves phosphodiester gaps towards the 3’
end
DNA Polymerase II Enzyme that proofreads the replication and
catalyzes exonuclease activity to repair errors
DNA Polymerase III The main enzyme that adds the appropriate
nucleotides in the 5’ – 3’ direction
RNA Primase Enzyme that creates/synthesizes the necessary
RNA primers to allow DNA Polymerase III to
begin its chain
RNA Primer The temporary RNA chain to allow for DNA
Polymerase III to initiate nucleotide
polymerization
Okazaki Fragments The pieces in which the lagging,
discontinuous strand is synthesized in
DNA Ligase Enzyme that seals the gap between two
strands of DNA with a phosphodiester bond
between the phosphate group of one strand
and the deoxyribose group of another strand
(joins the Okazaki fragments)
Telomere Ends of eukaryotic chromosomes with special
nucleotide sequences that protect genes from
being eroded through multiple rounds of
DNA replication
Telomerase Enzyme that adds a short molecule of RNA as
a template to extend the 3’ end, creates room
for primase and DNA Polymerase III to
extend 5’
Nuclease Enzymes that repair DNA errors by splitting
phosphodiester bonds and performing either
mismatch or excision repair based on the
extent of the damage.

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