Harken, James

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MAPPING WETLANDS AND POTENTIAL WETLAND RESTORATION AREAS

IN BLACK HAWK COUNTY, IOWA USING

OBJECT-ORIENTED CLASSIFICATION

AND A GIS-BASED MODEL

An Abstract of a Thesis

Submitted

In Partial Fulfillment

of the Requirements for the Degree

Master of Arts

James Harken

University of Northern Iowa

July 2004
ABSTRACT

Wetlands are transitional lands between terrestrial and aquatic systems that

provide many benefits, including: floodwater retention, non-point pollution treatment,

wildlife habitat, and soil-erosion control. Wetlands in Iowa have decreased over 95% in

the last 200 years. Therefore, there is a need to map and monitor these resources, as well

as to determine potential sites for wetland restoration. In Black Hawk County, wetland

maps are outdated, and ground surveys have proved to be too time-consuming and

expensive. Traditional pixel-based automated classifiers of remotely-sensed imagery

have also proven to be inaccurate in classifying wetlands because of spectral confusion.

This study tests multispectral data, hybrid data, hyperspectral data, a seasonal matrix, and

a new object-oriented classifier. These are tested against traditional multispectral, pixel-

based (ISODATA and Maximum-Likelihood) classifiers both to see if wetland

classification accuracies from remotely-sensed imagery can be increased and to produce

an updated wetlands map for Black Hawk County. A hyperspectral image of Eddyville,

Iowa is tested to evaluate how well wetlands are classified when a hyperspectral image is

used with an object-oriented classifier and a hyperspectral pixel-based (Spectral Angle

Mapper or SAM) classifier. A GIS-based wetland restoration model is developed to

identify potential wetland restoration sites in Black Hawk County.

This study shows that the object-oriented classifier is more accurate in identifying

wetlands and overall land-cover than pixel-based ones (ISO DATA, Maximum-

Likelihood, SAM) in both multispectral, hybrid-multispectral, and hyperspectral imagery.

The summer/fall seasonal matrix produced unacceptable accuracies. Wetlands in Black


Hawk County decreased by 1500 acres (plus or minus an error margin of 375 acres) from

1983 to 2003. The restoration model identified 2,971 acres in Black Hawk County as

being highly suitable, 34,307 acres as being moderately suitable, and 121,271 acres as

having low suitability for wetland restoration. The results are available at http://gisrl-

9 .geog. uni. edu/wetland.

Limitations of the study include file size when using the object-oriented classifier,

image availability for the seasonal matrix, and the number of variables employed in the

GIS-based restoration model. The future direction of the study lies in obtaining

hyperspectral data for Black Hawk County, more current Landsat multispectral imagery

for the seasonal matrix, and testing of more non-parametric classifiers, such as the CART

algorithm.
MAPPING WETLANDS AND POTENTIAL WETLAND RESTORATION AREAS

IN BLACK HA WK COUNTY, IOWA USING

OBJECT-ORIENTED CLASSIFICATION

AND A GIS-BASED MODEL

A Thesis

Submitted

In Partial Fulfillment

of the Requirements for the Degree

Master of Arts

James Harken

University of Northern Iowa

July 2004
11

This study by: James Harken

Entitled: Mapping Wetlands and Potential Wetland Restoration Areas in Black


Hawk County, Iowa using Object-Oriented Classification and a GIS-
Based Model

has been approved as meeting the thesis requirement for the

Degree of Master of Arts

('
.-,of-----4
Dr. Ramanathan Sugumaran, Chair, Thesis Committee

'//z-1/JJ.J> c.,
Date Dr. Tim Strauss, Thesis Committee Member

'-//iJ /(J '(


Date
ll1

ACKNOWLEDGEMENTS

I would like to express my sincere appreciation to the Iowa Space Grant

Consortium for providing funding for the initial part of my research, all of the Geography

faculty at the University of Northern Iowa, and especially my committee members of Dr.

Sugumaran, Dr. May, and Dr. Strauss. I would also like to thank Steve Finegan of the

Black Hawk County Conservation Board, Barb Berquam and Kim Veeder from the Black

Hawk County GIS office, and Pete Kollasch from the Iowa Department of Natural

Resources, for their feedback and advice, especially during the beginning phases of the

research.
iv

TABLE OF CONTENTS

PAGE

LIST OF TABLES ...... ......... ...... .. ........ ...... .... .............. .............. ................................ vi

LIST OF FIGURES .......................... ......... ....................... ............ .............................. Vll

CHAPTER I. INTRODUCTION................................................................................ 1

The Importance and Status of Wetlands.......................................................... 3

Goal and Objectives......................................................................................... 7

Research Questions.......................................................................................... 7

CHAPTER IL LITERATURE REVIEW ..... .... .. .. .. .. ... .. .. ... .. .. ...... .. .... .. .... .. .... .. ... ..... .. 9

Traditional M ultispectral Classification of Wetlands.................................... 10

Hyperspectral Classification of Wetlands........................................................ 13

Object-Oriented Classification of Wetlands.................................................... 16

Wetland Restoration Models Using G IS.......................................................... 18

CHAPTER III. METHODS........................................................................................ 23

Study Area 23

Data Used 23

Black Hawk County Multispectral Images .......................................... . 23

Eddyville Hyperspectral Image ........................................................... .. 25

Image Analysis and Classification ................................................................. .. 27

Object-Oriented Classification ............................................................ . 28

Multispectral CIR Image Classification .............................................. . 30

Multispectral Landsat ETM Image Classification .............................. . 31


V

PAGE

Hyperspectral CASI Image Classification........................................... 33

GIS-Based Restoration Model......................................................................... 35

CHAPTER IV. RESULTS AND DISCUSSION......................................................... 39

Multispectral CIR Classification...................................................................... 39

Multi spectral Landsat ETM Classification .. ..... .. .. ..... .. .. .. .. .. .. ... .... .. ..... ...... .. ... . 44

Hyperspectral CASI Classification.................................................................. 48

Overall Classifier Comparison......................................................................... 53

GIS-Based Restoration Model Results............................................................ 55

Wetlands Change in Black Hawk County....................................................... 59

Web-Based Data Dissemination...................................................................... 60

CHAPTER V. CONCLUSION................................................................................... 63

Recommendations for Future Research........................................................... 66

REFERENCES ............................................................................................................ 67

APPENDIX: MAPS..................................................................................................... 75
Vl

LIST OF TABLES

TABLE PAGE

1 Error Matrix CIR Supervised Classification..................................................... 42

2 Accuracy Percentages CIR Supervised Classification...................................... 42

3 Error Matrix CIR Unsupervised Classification................................................. 42

4 Accuracy Percentages CIR Unsupervised Classification ................................. 43

5 Error Matrix CIR Object-Oriented Classification (GPS ground truth points).. 43

6 Accuracy Percentages CIR Object-Oriented Classification .................. ........... 43

7 Error Matrix Landsat ETM 15 m Supervised Classification............................ 45

8 Accuracy Percentages Landsat ETM 15 m Supervised Classification .. .. .... .... . 46

9 Error Matrix Landsat ETM 15 m Unsupervised Classification........................ 46

10 Accuracy Percentages Landsat ETM 15 m Unsupervised Classification......... 46

11 Error Matrix Landsat ETM 15 m Object-Oriented Classification.................... 47

12 Accuracy Percentages Landsat ETM 15 m Object-Oriented Classification..... 47

13 Error Matrix CASI SAM Classification (Ground Validation Pixels)............... 52

14 Accuracy Percentages CASI SAM Classification ...... .. .................. .................. 52

15 Error Matrix CASI Object-Oriented Classification (Ground Validation


Objects)............................................................................................................. 53

16 Accuracy Percentages CASI Object-Oriented Classification........................... 53

17 Overall Classification Accuracy for Different Classifiers................................ 55

18 Results from GIS-Bascd Restoration Model..................................................... 59


vii

LIST OF FIGURES

FIGURE PAGE

1 Ecology of Wetlands Systems.......................................................................... 2

2 Iowa Surface Area Covered by Wetlands......................................................... 5

3 Black Hawk County, Iowa................................................................................ 24

4 Hyperspectral Image 50 Acre Study Area........................................................ 26

5 Multispectral Imagery Processing Flowchart .... ................... ............................ 27

6 Hyperspectral Image Processing Flowchart...................................................... 28

7 Example of a Fuzzy Function........................................................................... 30

8 GIS-Based Wetland Restoration Model for Black Hawk County.................... 37

9 Research Mapping Results................................................................................ 39

10 Results from Multispectral One Meter CIR Image Classification.................... 40

11 Results from Multispectral 15 Meter Landsat ETM Image Classification....... 44

12 Results from CASI Hyperspectral Image Classification .......... .. ... .. ... ...... ..... ... 51

13 Wetlands Change in Black Hawk County .. ... ..... .. ... .. ...... .. .. .... ... ... .. ...... ........ .. . 59

14 Screen Shot of Homepage................................................................................. 61

15 Screen Shot of Web-Based Data Interface........................................................ 62


CHAPTER 1

INTRODUCTION

Wetlands are an important ecosystem. Cowardin, Carter, Golet, and LaRoe

(I 979) provide the official federal definition of wetlands: "Wetlands are lands transitional

between terrestrial and aquatic systems where the water table is usually at or near the

surface or the land is covered by shallow water" (p.1 ). Other definitions include

"Wetlands are a mix of characteristics from terrestrial or upland areas and the

characteristics of aquatic or water environments" (Lyon, 1993, p. 7), " ... places where

plants and animals live amid standing water or saturated soils, also called swamps,

sloughs, marshes, bogs, fens, seeps, oxbows, shallow ponds, or wet meadows" (Cohen,

2001, p. 1), and the US Army Corp of Engineers Wetlands Delineation manual: "Those

areas that are inundated or saturated by surface or ground water at a frequency and

duration sufficient to support and that under normal circumstances do support, a

prevalence of vegetation typically adapted for life in saturated soil conditions"

(Environmental Laboratory, 1987, p. 9).

There are several wetland classifications available in the literature. One of the

most important is defined by the U.S. Fish and Wildlife Service which classifies wetlands

into five types: Palustrine (non-tidal freshwater habitats and open water less than 20

acres), Estuarine (deep water tidal habitats), Marine, Lacustrine (open water greater than

20 acres), and Riverine, defined as freshwater rivers and streams; (Dahl, 2000). All of

these wetland categories must have one or more of the following three attributes: (a) at

least periodically, the land supports predominately hydrophytes; (b) the substrate is
2

predominantly undrained and hydric (soil that has developed anaerobic conditions); and

(c) the substrate is nonsoil and is saturated with water or covered by shallow water at

some time during the growing season of each year. A pictorial representation of two

typical freshwater inland wetlands is given in Figure 1.

Terrestrial Wetland Deepwater


system aquatrc system

Hydrology
• Dry----.i<lf- Intermittently to ~14---Permanently flooded •
permanently flooded

Terrestrial Wetland
system

I-- l __ l -
Hydrology
- -- Ground water -- -
• Dry ---t->1<1-- Intermittently to ~
permanently flooded

Figure 1. Ecology of Wetland Systems.


(Source: Mitsch & Gosselink, 2000)
3

The Importance and Status of Wetlands

Wetlands compromise only 3 to 6% of the earth's land surface area, but they

provide human populations with a host of goods and services, including food storage,

water quality maintenance, agricultural production, fisheries, and recreation (Acreman &

Hollis, 1996). They are critical to flood protection, and act like sponges to soak up water

and release it slowly. Although most wetlands store an average of approximately three

feet of water, a single acre of wetland can store up to five feet, or 1.66 million gallons of

flood water (Sierra Club, 2000). Wetlands are also believed to play a significant role in

global climate change by acting as a source of atmospheric greenhouse gases such as

methane and a sink for both carbon (wetlands contain 15-22% of the world's soil carbon

pool), nitrogen, and methane (Takeuchi, Tamura, & Yasuoka, 2003; Trettin, Song,

Jurgensen, & Li, 2001). Global biodiversity is also enhanced by wetlands because they

are vital for the survival of a disproportionately large number of threatened and

endangered species (Mitch & Gosselink, 2000). Wetlands have become a popular way

for treating contaminated surface and wastewaters, and are particularly suited for treating

non-point pollution, such as agricultural and urban runoff (Dierberg, DeBusk, Jackson,

Chimeny, & Pietro, 2002). They can also lessen soil erosion, and moderate stream

temperature (critical for certain species survival like trout, Budlong, 2002). Lastly,

wetlands have been found to preserve archeological remains (Chapman & Cheetham,

2002).

Despite these proven advantages, wetland conversion to other land uses has been

a problem historically and continues to the present day. However, the last few decades
4

have witnessed an enormous rise in awareness of the importance of wetlands. Nationally,

at the time of European settlement, the continental United States contained an estimated

221 million acres (89 .5 million hectares) of wetlands, or 9% of the total surface area.

Over time, wetlands have been drained, dredged, filled, leveled, and flooded to the extent

that less than half of the original acreage remains (Dahl, 1990; Whittecar & Daniels,

1999).

Within the state of Iowa, wetlands were viewed as a hindrance to land

development and agriculture. In less than 150 years, these rich resources were drained,

filled, or otherwise altered, drastically changing the face of Iowa's land. Similar

percentages are given concerning the amount of wetland losses in Iowa. One study

places the loss at 95% (Arbuckle & Pease, 1999) and another 90%-95% (Cohen, 2001).

In a mandated report to Congress by the U.S. Fish and Wildlife Service, only two other

states showed higher wetlands losses than Iowa: California and Ohio (Dahl, 1990).

According to the Iowa Department of Land Stewardship [IDALS] ( 1998), the amount of

wetlands six years ago covered only 1.2% of Iowa's surface area, compared to 11% two-

hundred years ago (Figure 2).


5

1.20%

01803
@J 1997

11%

Figure 2. Iowa Surface Area Covered By Wetlands.

This is a loss of approximately 3.5 million acres, or an area approximately the size

of the state of Connecticut. The reduction of wetlands in Iowa has also contributed to the

fact that Black Hawk, Hamilton, Johnson, Linn, Story, and Tama counties were

designated federal (flood) disaster areas five times from 1989-1998 (Sierra Club, 2000)

and all of Iowa's 99 counties were designated federal (flood) disaster areas at least once

during that time.

The loss of these critical resources (wetlands) in Iowa with some 92% of the land

being used for agriculture (Dung, 2003), and their documented value, shows an urgent

need to monitor these resources, measure their changes, and provide a method for

identifying potential wetland restoration areas. Traditionally, wetlands are delineated

using ground surveys. However, these surveys are difficult and time-consuming (Lyon,

1993; Yasuoka et al., 1995). Geospatial technologies, such as remote sensing,

Geographical Information Systems (GIS), and Global Positioning Systems (GPS) can

provide an alternative and possibly better solution to mitigate the before-mentioned

problems (Goldberg, 1998). In addition, remote sensing data can be used for the
6

following: (a) to detennine the extent of wetlands, (b) to identify the type of wetland

resource, (c) to characterize the general wetland land cover type, ( d) to identify

submergent and emergent wetlands, and (e) to supply details about the resource (Lyon &

McCarthy, 1995). Geographical Infonnation Systems and GPS can be used effectively

for natural resource management, conservation, and restoration (Konecny, 2003). This

includes inventorying and updating wetlands (Houhoulis & Michener, 2000). The need

to update the last wetlands survey undertaken for Black Hawk County (completed by the

National Wetland Inventory and Iowa Department of Natural Resources and based upon

aerial photos taken in 1983 and 1984), is the justification for this research.

According to the Iowa Department of Natural Resources (2004), "Wetlands are

one of the easiest and most quickly restored elements of natural landscape, and they can

provide nearly instantaneous wildlife habitat. The Wildlife Bureau offers technical

assistance to landowners interested in restoring wetlands on their properties." The Iowa

Natural Resource Conservation Service (NRCS) administers the Wetland Reserve

Program aimed at returning fonner wetland areas that have been cropped. The

Emergency Wetland Reserve Program also works to place pennanent easements on land

that has a flood history, returning it to wetland conditions. Wetland detennination and

mitigation assistance is provided for United States Department of Agriculture wetland

compliance programs.
7

Goal and Objectives

The main research goal is to map and identify potential wetland restoration areas

in Black Hawk County, Iowa using remote sensing and GIS technologies. To achieve

this goal, the following four objectives are presented:

1. Extract up-to-date and accurate wetland areas from multispectral and

hyperspectral images;

2. Evaluate different image classifiers, specifically object-oriented, Maximum-

Likelihood, ISODATA, and Spectral Angle Mapper (SAM);

3. Analyze different GIS wetland restoration models from the literature and

create such a model for use in Black Hawk County;

4. Disseminate the final results through the Internet via Arc Internet Map Server

(ArcIMS).

Research Questions

On the basis of the goal and objectives of the study, the research questions are as

follows:

1. How well does the object-oriented classifier perform in comparison to

traditional ones, such as Maximum-Likelihood and ISODATA, for the delineation of

wetlands using multispectral imagery in Black Hawk County?;

2. Can data fusion, specifically between Landsat Enhanced Thematic Mapper

(ETM) multispectral and ETM panchromatic images, improve wetland classification?

3. Is the object-oriented classifier more accurate than SAM in high resolution

hyperspectral image classification of wetlands?


8

4. What role does summer and fall seasonality play in wetland classification

when using remote sensing data?

5. What are the most important factors in a GIS-based wetland restoration model

for Black Hawk County?


9

CHAPTER2

LITERATURE REVIEW

The value of wetlands and their contributions to a healthy ecosystem have been

gaining increasing recognition over the past few decades as have the spectral and spatial

resolution ofremote-sensing satellites since Landsat was first launched in 1972. Along

with the increased power of geographical information systems, mapping and monitoring

wetlands and other ecosystems with remotely-sensed imagery is proving to be an

indispensable tool for understanding these valuable resources and keeping wetland

inventories current. In Iowa 92% of the land is in agricultural use (the highest in the

nation) and Iowa ranks in the top three states in wetland losses (Dahl, 1990). Therefore,

there is a need to update decades-old inventories and research potential wetland

restoration areas.

The literature compiled for this study is broken down into classification

techniques of wetlands from remotely-sensed imagery and GIS-based wetland restoration

models. The review is based on the most current studies published. Although the

literature gives an excellent, solid foundation in multispectral assessment of wetlands,

recent software introductions (Benz, Hofmann, Willhauck, Lingenfelder, & Heynen,

2004) and availability of hyperspectral data give the chance to further research methods

of wetland classification. Lastly, wetland restoration models are reviewed to develop a

model that can be applied to the landforms of the study area.


10

Traditional Multispectral Classification of Wetlands

Traditionally, Landsat Multispectral Scanner (MSS), Landsat Thematic Mapper

(TM), and the French Systeme Pour !'Observation de la Terre (SPOT) satellite systems

have been used to study wetlands (Lunetta & Balogh, 1999; Shaikh, Green, & Cross,

2001; Shepard, Wilkinson, & Thompson, 2000; Toyra, Pietroniro, & Martz, 2000). Other

studies have included the moderate-resolution remote-sensing platforms of the National

Oceanic and Atmospheric Administration's Advanced Very High Resolution Radiometer

(AVHRR), the Indian Remote Sensing Program (IRS), the Japanese Earth Resources

Satellite (JERS-1), the European Remote-Sensing Satellite (ERS-1), the Shuttle Imaging

Radar (SIR-C), and lastly, the Canadian Radio Detection and Ranging Satellite,

RADARSAT (Alsdorf, Smith, & Melack, 2001; Bourgeau-Chavez et al., 2001; Chopra,

Verma, & Sharma, 2001). Some of the earliest work included visual interpretation of

aerial photographs. Unsupervised classification or clustering is the most commonly used

classification to map wetlands and maximum-likelihood is the most common supervised

method (Ozemi, 2000). To aid in the low wetland accuracy percentages that usually

accompany these classification methods (30 - 60% accuracies), multi-temporal and

ancillary data are often used along with various models to improve classification

accuracies. Ancillary data provide a practical solution to help solve the problem of

distinguishing among spectral similarities in wetlands, agricultural fields, and forests

(Houhoulis & Michener, 2000).

However, there are limitations in delineating wetlands using traditional, optical,

multispectral techniques. One limitation on the use of optical data for wetland mapping
11

is their inability to penetrate vegetation canopies, and thus their inability to remotely

sense flooding beneath a closed canopy (Bourgeau-Chavez et al., 2001). There has been

some research done on wetlands using radar data (Alsdorf et al., 2001; Bourgeau-Chavez

et al., 2001; Rio & Lozano-Garcia, 2000) as well as LIDAR (MacKinnon, 2001), but the

majority has been concentrated on Landsat TM, MSS, SPOT, and airborne Color Infrared

(CIR) photos.

Previous studies for classification of wetlands using rule-based classifiers have

shown mixed results. Jenssen and Middelkoop (1992) showed improvements of six to

twenty percent accuracies for crop cover classification of Landsat TM images over the

maximum-likelihood classifier. Halid (1997) had a decrease in accuracy of land cover

changes using a knowledge-based classifier compared to a maximum-likelihood one

(78% overall accuracy decreasing to 44%). However, he noted that rule-based

classification had the advantages of being quicker and requiring less field work. Sader,

Ahl, and Liou (1995) reported overall accuracies of 80% and 82% for wetlands in Maine

(in Orono and Acadia National Parks, respectively). Wetland producers accuracy in

Acadia National Park was determined to be 77% and wetlands users accuracy 62%. In

Orono National Park, wetlands producers accuracy was determined to be 66% and

wetland users accuracy 82%. Forested wetlands were emphasized in the study. Ozemi

(2000) noted that rule-based classifiers generally provide more accurate classification

results than the traditional maximum-likelihood method, but not always. In addition, she

noted that classification accuracies were much greater using two dates of imagery for

Landsat TM (leaf-on and leaf-off). This indicates that seasonal comparison of images for
12

wetland classification is probably needed. Hodgson, Jensen, Mackey, and Coulter (1987)

also indicated wetlands could be better defined on imagery acquired in spring when the

water table was high.

Houhoulis and Michener (2000) created a rule-based method of wetland change

detection using National Wetlands Inventory and SPOT data for a study area in the Flint

River Basin in south-west Georgia. Their utilization of the modulus to reduce data

volume and provide spectral variability was added to the attribute table of the wetland

polygons along with majority land-cover attributes to determine the change criteria

(within one standard deviation). They also used a custom Arc Macro Language (AML)

script to determine thresholds and provided an accuracy assessment of over 10% of the

12,000 wetland polygons used in the study. The overall accuracy of the study was an

impressive 96%, with 90% accuracy for changed wetlands and 8% of the wetlands

showing a conversion to other land uses. The reasoning behind the study was that the

National Wetland Inventory (NWI) coverages were two decades old and needed to be

updated. Limitations of the study include the fact that since only previously surveyed

wetlands were monitored for change, the accuracies were artificially high compared to

wetlands delineation from scratch. Also, no ground-trothing was performed, accuracy

was limited to the 20-meter resolution of the SPOT data, and no allowance was made for

created or mitigated wetlands that could have been created within the past twenty years.

Other work has been done using multi-sensor assessment (Toyra et al., 2001) and neural

networks (Han, Cheng, & Meng, 2003; Ozemi, 2000).


13

Hyperspectral Classification of Wetlands

Hyperspectral classification of wetlands is relatively new and the literature not yet

fully developed. Recently, only a few researchers have reported the use of hyperspectral

images for wetland mapping. Relevant studies include Anderson, Garono, and Robinson

(2003), Bakker and Schmidt (2002), Carter, Wells, and Lewis (2004), Juan, Jordan, and

Tan (2000), and Schmidt and Skidmore (2002). This dearth of studies exists perhaps

because hyperspectral imagery requires more complex software and more powerful

computers for processing than multispectral imagery. It is also more expensive, but

according to the following research, has yielded more accurate results than traditional

multi spectral imagery classification. The following sections provide a brief background

and summarize the available literature.

Studies using pixel classifiers, such as SAM, Minimum Noise Fraction, and

Matched Filter, in conjunction with hyperspectral imagery include Marcus, Legleiter,

Aspinall, Boardman, and Crabtree (2003), Salem and Kafatos (2001), and Underwood,

Ustin, and DiPietro (2003).

The Spectral Angle Mapper (SAM) algorithm is a physically-based spectral

classifier that uses an n-dimensional angle to match pixels to reference spectra (ENVI,

2002). The mathematical formula for SAM is as follows:

a= cos · 1 LXY (1)


✓L(X) 2 L(Y) 2
Where in Equation 1;

a = angle formed between reference spectrum and image spectrum


X = image spectrum
Y = reference spectrum
14

The advantage of the Spectral Angle Mapper technique over traditional

Maximum-Likelihood and ISODATA techniques is that the illumination differences

across landscapes (e.g., different aspects) do not create false differences between pixels

of the same composition (ERDAS, 2002). For a detailed description of the SAM

technique see Salem and Kafatos (2001) and ENVI (2002).

Carter, Wells, and Lewis (2004) evaluated the potential ofITD VNIR IOE (a type

of sensor) hyperspectral imagery to detect invasive wetland plant species in northern

Mobile Bay, Alabama, in September of 2003. Ground resolution was one meter, and the

wavelengths captured were in the 400 to 1000 nm range. They were successful in

detecting Chinese tallow tree (Tridica sebifera), and water hyacinth (Eichhornia

crassipes), as well as mapping native wetland plants. The researchers continue to

evaluate different algorithms for use in coastal wetlands.

Schmidt and Skidmore (2003) studied 27 salt marsh vegetation types in a coastal

Dutch wetland and concluded that statistical variation of wetland vegetation reflectance

spectra is possible in the visible to short-wave range. They used a three step analysis to

test difference between type classes, used continuum removal as a normalization

technique in the visible range (although it failed in the infrared range), and measured the

distance of the vegetation types in spectral space using the Bhattacharyya and Jeffries-

Matusita distance measures. S-Plus software was used to process the 579 bands between

400 and 2500 nm with a gap between 1820 to 1940 nm for atmospheric water absorption.

A GER spectrometer was used to measure the in situ reflectance on 132 vegetation plots.

The bands found to be the most useful for discriminating wetland vegetation types were
15

between 740-1820 nm in the shortwave infrared and between 400 to 700 nm in the visible

spectrum. Six wavelength bands were then selected out of the above mentioned bands

based on their higher frequency of statistically different median reflectance and their

more-or-less spacing across the whole spectrum. Those bands are: 404, 628, 771, 1398,

1803, and 2183 nm. This study provides a foundation for other researchers wishing to

test those specific bands for their own wetland study areas.

Bakker and Schmidt (2003) concentrate on edge filtering for hyperspectral images

in agriculture and salt marsh test areas. They conclude that hyperspectral edge filters can

assist in image interpretations. Lastly, Juan et al. (2000) flew a hyperspectral mission

over Fort Drum Marsh in Florida using an unspecified hyperspectral sensor that collected

64 wavebands in the 399.2 to 920.5 nm range. They were successful in delineating the

wetland species from the airborne hyperspectral imagery, but did not release what

wavebands were most sensitive for different plant species.

Anderson, Garono, and Robinson (2003) used Compact Airborne Spectrographic

Imager (CASI) Imagery along with Landsat 7 ETM+ images to map wetlands along the

Columbia River. They originally wanted to map the entire area with CASI, but ran into

time and budget issues. Their configuration for the CASI imagery was 19 bands from

459.3 nm to 819.8 nm, and 1.5 meter spatial resolution. They masked out the urban areas

and used National Wetland Inventory maps along with ground truthing to create the

classification. They were able to determine over 80 different classes with the CASI

imagery, 20 of which were purely spectrally determined. They also used ERDAS

Imagine software and the ISODATA unsupervised classification algorithm, where 6-7
16

major habitat types were identified and then continuously cut from the originally 19-band

mosaic until all spectral classes fit their criteria of narrowness. Their accuracy

assessment has still not been completed.

Lastly, Underwood et al. (2003) mapped iceplant (Carpobrotus edulis)

successfully in a southern California coastal habitat using the Minimum Noise Fraction

algorithm and band-ratio indices. Salem and Kafatos (2001) used the SAM algorithm

along with hyperspectral imagery to detect oil spills in Chesapeake Bay, and concluded

such a method minimized the limitations of conventional remote-sensing techniques (i.e.,

multispectral and aerial photographs). Marcus et al. (2003) evaluated one meter, 128

band hyperspectral imagery for mapping in-stream habitats, depths, and woody debris in

Yellowstone National Park. They concluded that clear water was necessary to measure

depth, and that tree canopy cover was also a problem. They accomplished high overall

accuracies ranging from 69 to 99%. One method (classifier) not seen in the hyperspectral

and wetlands literature is the object-oriented one, discussed in the next section.

Object-Oriented Classification of Wetlands

Object-oriented classification is relatively new to the field ofremote sensing and

most of the studies completed have taken advantage of high-resolution imagery

(IKON OS, QuickBird, etc.) for land-cover classification. Of particular interest to many

researchers is urban area classification due to the functions associated with eCognition

software. However, other research has focused on natural resource and wetland

classification, as shown by many studies (Antunes, Lingnau, & Da Silva, 2003; Civco,
17

Hurd, Wilson, Song, & Zhang, 2002; Gomes & Marcal, 2003; Ivits & Koch, 2002; Kaya,

Pultz, Mbogo, Beier, & Mushinzimana, 2002; van der Sande, de Jong, & de Roo, 2004).

van der Sande et al. (2004) divided one meter, four-band IKONOS-2 imagery into

different land cover segments with an overall accuracy of 74%, and then used that

thematic map as an input for a flood-simulation model. They were able to then

successfully estimate flood damage for local land-use planners and insurance companies.

Gomes and Marcal (2003) used 9-band 15-meter Advanced Spaceborne Thermal

Emission and Reflection Radiometer (ASTER) imagery to revise a 1995 land-cover data

set for the Vale do Sousa region in northwest Portugal. Their overall accuracy was

71.5%; forested areas, which were emphasized in the study, had an average accuracy of

46.3%.

Antunes et al. (2003) segmented a 4 band IKONOS image to identify riparian

areas that could not be spectrally differentiated in the northern part of the state of Parana

in southern Brazil. They needed to map declining wetland areas for resource

management because of increased agricultural activities. Their accuracies were 75.4%

for riparian vegetation and 78.6% for swamp vegetation. They also ran a Bayesian

Maximum Likelihood classifier for the same areas and came up with 56.0% for riparian

areas and 45.3% for swamp vegetation. Although they showed promising results, there

was a disappointing lack of detail in their exact pre-processing and methodology steps.

Civco et al. (2002) compared knowledge-based and object-oriented techniques

(among others) for land cover change detection in the Stony Brook Millstone River

watershed in New Jersey using Landsat ETM+ data. They concluded that no single
18

method was superior for their study data and area. However, they admitted "The image

segmentation and object-oriented classification holds much promise." and "The image

segmentation and object-oriented classification and change detection appeared to have

produced better overall results, especially in terms not only detecting and characterizing

the nature of change, but also in minimizing the salt-and-pepper effect caused by isolated

and non-contiguous pixels" (p. 8). Ivits and Koch (2002) used six European test sites and

IRS panchromatic and Landsat ETM imagery along with object-oriented classification to

develop a preliminary landscape habitat ecological analysis.

Kaya et al. (2002) acquired RADARSAT-1 data to map wetlands and other land

cover types in coastal Kenya to assess malarial risk. Their object-oriented approach

resulted in 85.5% overall accuracy and 65.3% accuracy for wetlands. They tested

Synthetic Aperture Radar (SAR) data because of lack of availability of multi-spectral

cloud free images for coastal, tropical regions. Some problems they encountered with the

data included backscattering returns being classified as wetlands, as well as certain forest

types (mangrove) also being wrongly classified as wetlands. Harken and Sugumaran

(2004) found that an object-oriented classifier had a high degree of accuracy in

classifying freshwater wetlands using 60 cm CASI hyperspectral imagery in a study area

in Eddyville, Iowa.

Wetland Restoration Models Using GIS

As Hey and Philippi (1999) note, wetlands can be restored to provide functions

that have been lost. They also note that wetland restorations are most effective when they

currently occupy less than 10% of the area to be restored. There are no standard models
19

for restoring wetlands as there are for determining and mapping wetlands (which in itself

is a complex, time-consuming procedure). However, there have been five studies

completed where remotely-sensed I GIS-based wetland restoration models have been

created and implemented. Berman, Rudnicky, Berquist, and Hershner (2002) worked in

Virginia and the Lower Mississippi River Conservation Committee (2001) completed a

study in the Mississippi Alluvial Valley in Missouri. Sader et al. (1995) worked in

Maine, Braster and Radish (1996) in western Iowa, and Riverlink (2000) in North

Carolina.

Other useful studies include wetland hydrological modeling (Brown, Johnston, &

Cahow, 2003; Loiselle, Bracchini, Bonechi, & Rossi, 2001; Tsihrintzis, John, &

Tremblay, 1998; Whittecar & Daniels, 1999) as well as wetland nutrient modeling (Wang

& Mitsch, 2000), wetland soil carbon modeling (Trettin, Song, Jurgensen, & Li, 2001),

wetland habitat modeling (Wakeley, 1988) and wetland buffer modeling (Budlong,

2002). The end product of the Lower Mississippi River Conservation Committee (2001)

model is a raster map, where each 30-meter cell has a arbitrary weighted value of 7 to 75,

which is to be interpreted as an indicator of relative probability of a given grid cell to

deliver water quality benefits ifrestored. The model's purpose was to prioritize areas for

forested wetland areas on private land next to the Mississippi River in south-east

Missouri. They used ARC/INFO and Arc View Grid Analyst software, as well as State

Soil Geographic Database (STATSGO) soil coverages, a Digital Elevation Model

(DEM), and geomorphology coverages. Hydrology (flooding, topography) was given


20

73.33% of the total model weight, and reforestation (soils) 26.67%. The reasoning

behind the weighting was not given.

Riverlink (2000) developed three disparate mountain wetland restoration models;

one for a general need assessment that identified 94 watersheds, a second to identify

high-probability wetland restoration areas that identified 140,000 acres of land, and a

third to identify large parcels of land, 25 acres or more, that identified 4 77 potential sites,

and 78 high potential sites. Hydrologic units were determined to have too coarse a

resolution for the study needs so small management units were created in Arc View based

on a flow accumulation of 5,000 grid cells or approximately 1,148 acres. Grid cells in

each layer of the model (wetlands, building starts, agriculture, roads, elevation, sewer,

and conservation/natural resource areas) were ranked on their presence or absence, their

linear distance from each other, and what percent of the grid cell they covered. The cells

were then scored and regrouped into three natural break categories of restoration

potential, high need, medium need, and low need. They also used another natural break

(Jenks) regrouping based on final parcel size; i.e., their need was to develop wetland

restoration areas in the largest tracts possible.

Budlong (2002) used three factors in determining potential riparian habitat buffers

in the Whitewater River Watershed in south-eastern Minnesota. They were: proximity

of row crops to streams and rivers, slope, and proximity of feedlots to rivers and streams

of the watershed. It should be noted that in most of the restoration models reviewed,

proximity to a hydrological feature (usually a river or stream) and slope were always used

as model factors. Hydric soils were also found to be important in ranking potential
21

wetland restoration areas, and these areas were always preferred to be agricultural.

Budlong's ranking system divided subwatersheds into high, moderate-high, moderate, or

low restoration potential. To achieve this goal of ranking, percentages were used for

land-cover types within the 50-meter stream buffer (>65% row crop area meant high

potential, etc.), mean slope value within 300 meters of all hydrological features, and total

areas of feedlots within the 50-meter stream buffers. The final equation was: (x = row

crop land-cover%, y = slope, and z = feedlot areas) RESTORATION POTENTIAL= (x

* 0.65) + (y * 0.25) + (z * 0.10). One of the most important conclusions from this study

was that riparian stream buffers should be adjacent to the headwater streams of a

watershed for maximum ecological effect.

Berman et al. (2002) used ARC/INFO software, a land-cover layer derived from

30-meter Landsat United States Geological Survey (USGS) imagery, a digital Soil

Survey Geographic Database (SSURGO) layer, a hydrology layer, a National Wetlands

Inventory (NWI) layer, and conservation-area layers. They based their analysis on

wetland functions. Polygons were ranked as good, high, or excellent according to water

quality, flood control, sediment control, erosion control, and wildlife habitat. Landscape

position and surrounding land-cover was also used to assign rankings. Agricultural areas

were again favored in the ranking schema.

Lastly, Braster and Radish (1996) wanted to identify current land uses and offer

alternatives to land managers of floodplain areas. They wanted to do this by using GIS,

strengthening relationships with local organizations and landowners, and providing

informed development strategies. Chi-square values were developed for the variables of
22

depth of water table, number ofNWI wetlands, presence ofNWI wetlands, position of

soil mapping units, com-suitability ratings, presence of hydric and non-hydric soils, and

proximity to levees. Lo git modeling was used and weights and ratings for the variables

were based on the chi-square for the first model (Model 1) and field experience for the

second model (Model 2). The formula for the composite score was= (W 1 * R + (W *
1
)
2

R 2) + ... + (WA7 * R"7) where W 1 is the weight for the variable mapped data layer 1 and

R I was the rating assigned to the category on data layer 1. Weightings were based on a

GIS map arithmetic approach, after Anderson (1992). After applying the models to the

312 selected study sites frequency statistics were generated. Both models showed a high

improvement over chance (83.0 and 82.1 % respectively) in predicting high-probability

locations of wetland restorations.

All of these studies in both wetland classification and restoration methods have

been important in the fields of wetland delineation and restoration research. Their

limitations include not bringing together updated wetland classification and restoration

models and unacceptable accuracies. This study will attempt to address some of those

issues through the use of a new classifier (object-oriented), up-to-date data sets, and a

unique site context (the Iowan Surface and Southern Iowa Drift Plain landforms, more

specifically Black Hawk County and Eddyville) in which to apply the methods and

potential wetland area restoration model. Also, in the literature the majority of

hyperspectral mapping of wetlands has been concentrated in coastal and estuarine areas,

and not in freshwater inland areas.


23

CHAPTER3

METHODS

Study Area

Two study areas were used in this research: Black Hawk County, located in the

northeastern part of the state and encompassing 567 square miles, and 50 acres near

Eddyville, in south-east Iowa. The imagery used included 30-m Landsat ETM+ for

Black Hawk County and 60 cm CASI for Eddyville, discussed further in the next section.

The two study areas were chosen for the following reasons: (a) Black Hawk County

because imagery was available at no cost, and local experts could critique the

methodology along the way; and (b) Eddyville because it is the only portion of the state

with a hyperspectral dataset where wetlands are present.

Data Used

Black Hawk County Multispectral Images

Black Hawk County, Iowa is the fourth most populous county in the state and is

located at 42.491N Latitude and 92.367W Longitude. The multispectral imagery used for

classification is as follows: An April 2002, I-meter resolution Color Infrared Photo

mosaic (Figure 3, left), obtained from the Iowa Geographic Image Server, a September

2000, 30-m Landsat ETM+, and a July 1999, 30-m Landsat ETM+ obtained from the

University of Northern Iowa's STORM Project (Figure 3, right). Two hybrid data sets

were created by pan-sharpening the Landsat images with their 15-m panchromatic band,

Principal Components Analysis and a Matrix of the two seasonal Landsat images. The

choice of the data sets was based on their no cost availability and their temporal
24

applicability (all three within the last four years). This is pertinent because one of the

project goals was to create an updated wetlands map for the county using the most up-to-

date imagery available. As stated previously, the current wetlands map, created by the

Iowa Department of Natural Resources (IDNR) and the NWI, is based on aerial

photograph interpretation and field surveys done almost twenty years ago. The vector

ancillary data used for cross checking the multispectral imagery, classification accuracy

assessments, and as direct inputs into the restoration model (wetland areas, hydrology,

soils, and conservation areas) were obtained from various sources, including the USGS,

NRCS, IDNR, NWI, and Iowa Geographic Map Server. Additionally, data were acquired

from the Black Hawk County GIS office. The software used with the multispectral

imagery was ERDAS Imagine 8.6, eCognition 3.0, and ArcGIS 8.2.

Figure 3. Black Hawk County, Iowa. One meter CIR image (left)
and 15 m Landsat ETM image (right).
25

Eddyville Hyperspectral Image

Eddyville, Iowa is a small town located in the south-central part of the state along

the Des Moines River at 41.160N Latitude and 92.631W Longitude. The hyperspectral

image used for classification was flown with the CASI sensor in July of 200 I for a Iowa

Department of Transportation & National Consortium on Remote Sensing in

Transportation - Environmental Group project (Iowa Department of Transportation &

National Consortium on Remote Sensing in Transportation - Environmental Group

[NCRST-E], 2002). The 2001 image is a mosaic of seven flight lines and has a spatial

resolution of 60 cm with 25 contiguous spectral bands, each of which is approximately

0.018 micrometers with a range of 350 to approximately 2500 nanometers (Figure 2). In

addition, a I-meter Color Infrared Image from the IDNR, SSURGO maps and NWI data

were used for training and accuracy assessment. The software used to process and

classify the hyperspectral image was ENVI 3.6 and eCognition 3.0.

The 60-centimeter 2001 Eddyville image encompasses approximately 969 acres

and contains unique ecological habitats. The Iowa Department of Transportation

discovered this when they planned a highway bypass northeast of the city and citizens

informed the IDOT of the protected species and habitats (NCRST-E, 2002). However,

only a SO-acre test portion of the study area was classified in this research (See Figure 4).

Wetland vascular plant species in the area include such species as: Festuca rubra L. (red

fescue), Pycnanthemum tenuifolium (Slender mountain mint), Polygonum persicaria

(Spotted ladysthumb), Conyza sp., Phalaris arundinacea (Reed canarygrass), Galium

aparine (Goose-grass), Utica dioica (nettles), and Marus alba (White mulberry). All of
26

the before mentioned species occur on the 1996 National List of Vascular Plant Species

that Occur in Wetlands, published by the U.S. Fish and Wildlife Service (United States

Fish and Wildlife Service, 1996).

Figure 4. Hyperspectral Image 50 Acre Study Area.


27

Image Analysis and Classification

The following sections provide an overview of object-oriented classification and

the processing behind the multispectral and hyperspectral images. Figures 5 and 6

demonstrate the overall flow of the multispectral and hyperspectral image analysis

process.

Multispectral Data

30 m Landsat ETM+ I mCIR

Data Fusion

Seasonal Matrix Pan-sharpened


July+ Sept.

Training Areas Identified

Object-Oriented !SODATA Unsupervised Maximum Likelihood


Classifier Classifier Classifier

Accuracy Assessment

Final Output Final Output Final Output


Seasonal Matrix Landsat CIR

Figure 5. Multispectral Imagery Processing Flowchart.


28

CASI Data

Pre-Processing (Minimum Noise


Fraction Algorithm)

Band Selection

Training Areas Identified


(RO!s)

Spectral Angle Mapper Multiresolution


(SAM) Classifier Segmentation

00 Classification

Output Rule Images


Training Areas
Retrained

Accuracy Assessment

Final Output Final Output


SAM 00

Figure 6. Hyperspectral Image Processing Flowchart.

Object-Oriented Classification

In contrast to traditional image-processing methods, the basic processing units of

object-oriented analysis are image objects or segments, and not single pixels (Baatz &

Schape, 2001 ). The reasoning behind this is the expected result of many image-analysis

tasks is the extraction of real-world objects. Representation of image information is

based on the networking of these image objects, which must be explicitly worked out in

contrast to implicit neighbor objects on the pixel scale. Scale is an important


29

consideration in object-oriented analysis because it determines the occurrence or

nonoccurrence of a certain object class, i.e., a house or a subdivision, or a field or an

ecosystem. This is achieved by a strict hierarchical structure that allows relations

between objects and their sub-objects and super-objects. Single pixel objects represent

the smallest possible processing scale. Other information used in object-oriented analysis

includes tone, shape, texture, context, and information from other object layers.

The method of segmentation of the image objects is important, as there are an

almost infinite number of solutions. They can be roughly grouped into two categories:

knowledge-driven (top down) and data-driven (bottom up). Examples of data-driven

segmentation include unsupervised spectral classification, region-growing algorithms

from seed pixels, and texture-segmentation algorithms. According to the eCognition

User Guide (Baatz & Schape, 2001), image segmentation in the eCognition software is

essentially a heuristic optimization procedure which locally minimizes the average

heterogeneity of image objects for a given resolution over the whole scene. The

parameters that must be set for image segmentation in eCognition include: (a) aliases, (b)

layer weights, (c) image-object level, (d) scale parameter, (e) segmentation mode, (f)

composition of homogeneity criterion, and (g) type of neighborhood.

Classification is based on fuzzy systems which use a degree of probability to

express an object's assignment to a class. Please refer to Figure 7 for a graphical example

of a fuzzy function. The membership value lies between 1.0 and 0.0, where 1.0 expresses

full membership/probability and 0.0 expresses absolute non-membership/improbability.


30

In eCognition, the software used for this project, supervised classification was

used to create training areas to classify the data, and ultimately, to see how well wetlands

were classified.

µ = 0.5

µ = 0.0

Figure 7. Example of a Fuzzy Function. A crisp set M (rectangle) and the fuzzy sets
A and C (triangles) over a feature range X.

Multispectral CIR Image Classification

The unsupervised classification of the CIR I-meter (4.6 GB file size) was

completed using ERDAS Imagine's ISODATA algorithm with the following parameters:

120 classes with a convergence threshold of .95 and 30 maximum iterations. To identify

separable clusters in the histogram, 120 classes were selected. Classes were then

identified by visual interpretation based on the original false-color image and recoded

(merged) into 6 general classes based on the Anderson, Hardy, Roach, and Witmer

(1976) USGS classification system: Wetland (includes Woody and non-Woody

Wetlands), Mixed Forest, Artificial Surface, Fallow/Bare Soil, Mixed Grasses (includes

Mixed and Herbaceous Grasses), and Open Water. The supervised classification of the

CIR was completed with ERDAS Imagine's Maximum-Likelihood Classifier, using a


31

created signature file of polygon AO I's by visual interpretation and NWI ancillary data

and grouped into the same six general classes used in the unsupervised classification:

Wetland, Mixed Forest, Artificial Surface, Fallow/Bare Soil, Mixed Grasses, and Open

Water. The accuracy assessment for the CIR was performed by generating 300 random

stratified points or 50 points per class. The points were then visually interpreted on an

unclassified 2002 CIR image.

For the object-oriented classification of the 1-m CIR image, a 2,881-acre subset

was classified, due to file size restraints within the software. This specific limitation is

discussed in greater detail in Chapters 4 and 5. Layer 3 of the CIR image was given a

slightly higher weighting (1.0 versus 0.8 for layers 1 and 2) based on its proven

vegetation sensitivity characteristics (Lillesand & Kiefer, 2000). For the accuracy

assessment of the subset image, GPS ground trothing was performed for 35 areas during

June of 2003.

Multispectral Landsat ETM Image Classification

The unsupervised classification of the Landsat ETM+ 15-m image of Black Hawk

County was done using the same parameters as the other unsupervised classification

(CIR) to insure statistically comparable results. The ISODATA algorithm was used to

separate the image into 120 classes with a convergence of 0.95 and 20 maximum

iterations. Classes were identified by visual interpretation, histogram separability, and

ancillary data and then grouped into six classes. A Row Crop class was substituted for

Fallow/Bare Soil for this classification because the image was captured in September and

much more planted vegetation was present than in the April CIR. The other five classes
32

remained the same. The supervised classification of the Landsat image was completed

using the ERDAS' Maximum-Likelihood Classifier, using a created signature file of

polygon AO I's based on visual interpretation and NWI ancillary data and grouped into

the same six classes as the unsupervised Landsat classifications. The accuracy assessment

was performed by generating 240-300 random stratified points or 40-50 points per class

depending on pixels-per-class availability and visually interpreted using both an aerial

photo and an unclassified TM image.

For the object-oriented classifier in eCognition, Layers 3, 4 and 5 on the Landsat

Image as well as layer 3 (SWIR) on the CIR were given slightly higher weightings (1.0

compared to 0.8) during the initial segmentation based on their proven vegetation

sensitivity characteristics. Each data set in eCognition was classified according to an

average of 185 objects per class and 50 samples per class were tested (6 classes) for a

total of 300 random sample points for the accuracy assessment (except for the Landsat

ETM 30-m where lack of objects kept the points down to 20 per class). Objects generally

ranged from 5-15 pixels in size for the CIR and 94-95 pixels for the Landsat image.

A seasonal matrix (Landsat summer/fall images) was created in ERDAS

Imagine's interpreter function under GIS analysis to address the third research question

and followed the same classification and accuracy assessment procedures as mentioned

above. Figure 5 shows the overall multispectral processing flow for both the CIR and

Landsat ETM+ data.


33

Hyperspectral Image Classification

The Spectral Angle Mapping Wizard was run in ENVI against the subset

Eddyville hyperspectral image. The wizard is composed of 10 steps, however only 4 of

the most pertinent steps are shown in the flowchart in Figure 6. The first step in the

image analyses was to select suitable bands and to reduce noise. A Minimum Noise

Fraction (MNF) algorithm was run to determine the inherent dimensionality of image

data, segregate noise, and to reduce the computational requirements for subsequent

processing (Boardman & Kruse, 1994). The MNF is a linear transformation that consists

of two separate principle component analysis (PCA) rotations, separating noise from

signal and compressing spectral information to a few bands (Green, Berman, Switzer, &

Craig, 1988). Based on the MNF output graph of eigenvectors and by visually inspecting

the new bands, 16 of the 25 bands were selected as inputs for the classification. The next

step in the flow chart is the identification of training areas or RO I's (Regions oflnterest),

or supplying spectral endmembers as stated in the SAM wizard. Regions of Interest were

selected from ground control points and augmented with visual interpretation. For the

entire 969 acre image, 82 ground truth points were available, 41 of which were used to

develop training areas and 41 of which were used to develop ROI's for accuracy

assessment purposes. Training and accuracy areas were also grown from seed pixels and

manually delineated into polygons based on visual interpretation of a I-meter Color

Infrared Image along with corresponding digital SSURGO soil maps and National

Wetlands Inventory data. The Spectral Angle Classifier was then run using a maximum

angle of O.10. Output rule images were also generated to see if any of the classes were
34

poorly identified. A comparison between the classified image and validation areas was

generated using standard post-classification techniques, resulting in a confusion matrix

(see Table 14). For more information on post-classification techniques using ENVI and

hyperspectral images, refer to Underwood, Ustin and DiPietro (2003).

Nine classes were chosen to represent all wetland types present as well as

additional aggregated land cover types. Wetland types were based on ground truth

assessments and other land cover types were based on the Anderson Level classification

(Anderson et al., 1976). The classes include three classes of wetland: Open Water,

Aquatic Vegetation, and Flooded Forest, and the other land cover classes include:

Floodplain Crop, Upland Crop, Artificial Surface, Herbaceous Cover, Shadow, and

Mixed Forest. These are shown in the final output maps (Figure 10).

For the object-oriented classifier, the same procedures were followed for steps

one through four of the flowchart shown in Figure 5. The same 16 bands used for the

SAM classifier were exported to an ERDAS Imagine format (.img), and then subset into

a smaller file size (because of eCognition's file size limitation), and lastly imported into

eCognition. The hyperspectral image was segmented using the following parameters:

33-pixel average object-size (derived from a segmentation parameter of 10 pixels), equal

weighting given to each of the 16 bands or layers, and standard nearest-neighbor

relationship for the class hierarchy. For more information on object-oriented

classification see Benz (2001), Baatz and Schape (1999), and Darwish, Leukert, and

Reinhardt (2003).
35

A standard accuracy assessment was also run in eCognition, using ground truth

points and visually interpreted areas, resulting in a confusion matrix output analogous to

ENVI's: overall accuracy, wetland users accuracy, wetland producers accuracy, and the

kappa statistic.

GIS-Based Restoration Model

A restoration model for Black Hawk County was developed to identify areas that

cannot be defined as current legal wetlands, but due to their nature of soil properties,

distance to surface hydrological features, and elevation, were most likely wetlands in the

past. It was also created to reveal what areas that would provide the most benefit for the

least cost and time when planning conservation within the county.

The model shown in Figure 8 is based on Berman et al. (2002), Braster and

Hadish (1996), Budlong (2002), Cowardin et al. (1979), Lower Mississippi River

Conservation Committee (2001), Riverlink (2000), Sader et al. (1995), and the US Army

Corp of Engineers Wetland Delineation Manual (Environmental Laboratory, 1987).

These authors found hydric soil, low slope, and distance to hydrological features and

existing wetlands as the most important variables. Those variables were weighted in this

model accordingly except for low slope, as the entire county study area is flat enough to

disregard that as a factor. Other variables included in the literature but not deemed

applicable to the study area of Black Hawk County were defining hydrological basins,

distance to levees, and amount of forest cover. Since this study is focused on wetland

restoration sites and not current delineation and mapping of wetlands, criteria one of the
36

federal wetland definition (hydrophytic vegetation) was not used. Significant land cover

changes (mostly conversion to agriculture) in the study area during the last 150 years

have resulted in destruction of most hydrophytic vegetation.

Four data layers were incorporated into the model shown in Figure 8: (a) a

SSURGO soil type layer from the NRCS, (b) a hydrology layer (rivers and streams) from

the IDNR, (c) an existing wetlands layer from the NWI, and (d) a shapefile of Black

Hawk County Conservation Areas obtained from the Black Hawk County GIS office. All

shapefiles were converted into coverages in ArcGIS 8.2 to build topology and converted

to the same projection, Universal Transverse Mercator Zone 15 North, North American

Datum 27. The four coverages were then converted into raster (grid) format in ArcGIS

Spatial Analyst to facilitate weighting and ensure uniform cell size between layers. A 30-

meter cell size was chosen as this was the lowest resolution of confidence according to

the accuracy assessments included in the layers' metadata. Also, a 1992 30-meter USGS

Landcover map was used to initially mask out areas unsuitable for restoration (urban,

bare rock and sand, open water, existing wetlands) and a 1996 county roads map from the

IDNR was used to mask out a 30-m buffer along roadsides (see Berman et al., 2002).
37

Area of Interest Land cover Mask & Roads buffer


Mask

Soils Index Hydrology Index Existing Areas Index

Hydric Soil Proximity to County Conservation


Surface Water Areas

Existing
Wetlands

Ranked Potential Wetland Restoration Areas

Figure 8. GIS-Based Wetland Restoration Model for Black Hawk County.

Weighting was accomplished by evaluating which criteria were the most

important for the study area of Black Hawk County. The Existing Areas Index was

evaluated to be the most important, with areas adjacent or contained in an existing county

conservation area ranked as a one (on a scale of one through four, one being the highest),

and the adjacent to existing wetlands factor ranked as a three. The reasoning behind this

is that wetlands have a greater chance of being restored and are easier to manage if they

are to be located in land already owned or adjacent to county conservation land (S.

Finegan, personal communication, May, 2003). The Soils Index was ranked as the next

in importance, because to meet the federal definition of a wetland, the wetland must

contain hydric soil (Cowardin et al., 1979). Therefore poorly-drained, hydric soil was

given a ranking of two. Lastly, proximity next to a surface hydrological feature was

ranked at four, because of the importance given this variable in previous studies
38

(Budlong, 2002). All cells in each layer were reclassified using Spatial Analyst's

Reclassify function by adding a column in the attribute table (RANK) and providing a

score. The final equation, adapted from Budlong (2002), was: (x = existing area index

total, y = soil index total, z = hydrology index total) RESTORATION POTENTIAL= [(x

* 0.85) + (y * 0.65) + (z * 0.40)].


39

CHAPTER4

RESULTS AND DISCUSSION

The classification results can be thought of as a binary tree, as shown in Figure 8.

Multispectral classification results for Black Hawk County include three classifiers for

the CIR imagery, and three classifiers for the Landsat ETM imagery. Hyperspectral

classification results for Eddyville include two classifiers for the CASI imagery.

Wetlands Mapping Products

Multispectral Hyperspectral

CIR Landsat ETM CASI

ISODATA

Figure 9. Research mapping results.

Multispectral CIR Image Classification

Figure 9 depicts the CIR image classification with three classifiers: ISODATA,

supervised Maximum-Likelihood, and Object-Oriented. In Figure 8, light/white areas

represent wetlands, black, water, and gray tones other land-cover classes. For full-color

results of the CIR classification, see Appendix: Maps 1 through 3.


40

CIR - IS0DATA classified CIR-ML CIR - 00 image


image classified image classified image

Figure 10. Results from Multispectral One Meter CIR Image Classification.

The object-oriented method gave the highest overall accuracy when classifying

the CIR (73.2%) while the Maximum-Likelihood classifier gave the highest wetland

producers accuracy (75.0%) while the object-oriented classifier gave the best wetland

users accuracy (50%; see Table 13). The object-oriented classifier in general performed

worse than expected, and in contrast to previous studies in which high-resolution imagery

(four meter IKONOS) had been used to identify wetlands (Antunes et al., 2003). Two

possible reasons include incorrect scale parameters used in the segmentation step and

poor spectral resolution. The eCognition (object-oriented) software consistently

performed better the more layers present there were to segment (see Table 6, 12, and 17).

However, the one-meter CIR was very useful as an ancillary data source and wetlands

could be manually (visually) delineated. Thus, CIR imagery is a cost-effective solution

to agencies seeking to define wetlands from remotely-sensed imagery. Also, the entire

county was not classified with the object-oriented classifier and the CIR image, because

of file limitations in the eCognition software, a problem that also surfaced with the

Eddyville hyperspectral image. For more information, refer to Chapter 5, Conclusion.


41

The ISODATA unsupervised algorithm differentiated artificial surfaces, tree

canopies and wetland areas better than the Maximum-Likelihood supervised method; it

was also slightly more accurate overall. Strangely, the supervised method identified the

open-water class more effectively.

Table 1 provides the error matrix for the CIR Maximum-Likelihood supervised

classification, and Table 2 shows the various accuracy percentages for different types of

land-cover classes. Similarly, Table 3 displays the error (or confusion) matrix for the

CIR unsupervised ISODATA algorithm classification, and Table 4 lists the class

accuracy percentages for the before mentioned method. Lastly, Table 5 represents the

confusion matrix for the object-oriented classification method, again using the 2002

Color Infrared one meter aerial photo. Table 6 illustrates the class accuracy percentages

for the CIR object-oriented method. One random point for the CIR supervised

classification accuracy assessment had to be discarded since it fell out ofrange of the

image; similarly 16 points had to be discarded for the unsupervised classification

accuracy assessment.
42

Table 1

Error Matrix CIR Supervised Classification

Class Artificial Open Fallow/Bare Mixed Mixed


Wetland Total
Surface Water Soil Grasses Forest
Artificial
II 3 34 2 0 0 50
Surface
Open Water 49 0 0 0 0 50
Fallow/Bare
0 48 0 0 50
Soil
Mixed
0 0 45 3 50
Grasses
Wetland 4 0 7 12 18 9 50
Mixed
43 0 2 2 49
Forest
Total 19 53 132 59 24 12 299

Table 2

Accuracy Percentages CIR Supervised Classification

Class Producers Users


Kappa
Accurac~ Accurac~
Artificial Surface 57.89 22.00 0.1671
Open Water 92.45 98.00 0.9757
Fallow/Bare Soil 36.36 96.00 0.9284
Mixed Grasses 76.27 90.00 0.8754
Wetland 75.00 36.00 0.3041
Mixed Forest 16.67 4.08 0.0007

Note. Overall Accuracy 57.86%, Overall Kappa 0.4941.

Table 3

Error Matrix CIR Unsupervised Classification

Class Artificial Open Fallow/Bare Mixed Mixed


Wetland Total
Surface Water Soil Grasses Forest
Artificial
36 12 0 0 50
Surface
Open Water 7 12 25 0 2 4 50
Fallow/Bare
0 48 0 0 50
Soil
Mixed
0 0 0 50 0 0 50
Grasses
Wetland 2 0 30 2 II 5 50
Mixed
0 5 16 6 22 50
Forest
Total 47 13 120 69 20 3I 300
43

Table 4

Accuracy Percentages CIR Unsupervised Classification

Class Producers Users


Kappa
Accurac:i::: Accurac:i:::
Artificial Surface 76.70% 72.00% 0.6457
Open Water 92.31% 24.00% 0.2056
Fallow/Bare Soil 40.00% 96.00% 0.9333
Mixed Grasses 72.46% 100.00% 1.0000
Wetland 55.00% 22.00% 0.1643
Mixed Forest 70.97% 44.00% 0.3755

Note. Overall Accuracy: 59.67%, Overall Kappa: 0.5160.

Table 5

Error Matrix CIR Object Oriented Classification (GPS ground truth points)

Class Artificial Open Fallow/Bare Mixed Mixed


Wetland Total
Surface Water Soil Grasses Forest
Artificial 0
4 0 0 0 0 4
Surface
Open Water 5 0 0 0 0 6
Fallow/Bare
0 0 4 0 0 0 4
Soil
Mixed
0 0 5 2 0 8
Grasses
Wetland 0 0 0 0 6 4 10
Mixed
0 0 0 0 2 3
Forest
Total 5 5 5 5 10 5 35

Table 6

Accuracy Percentages CIR Object Oriented Classification

Class Producers Users


Kappa
Accurac;r Accurac:i:::
Artificial Surface 100.0 80.0 0.778
Open Water 83.3 100.0 1.00
Fallow/Bare Soil 100.0 80.0 0.778
Mixed Grasses 62.5 100.0 1.00
Wetland 68.75 50.0 0.5 I 7
Mixed Forest 33.3 20.0 0.135

Note. Overall Accuracy: 73.2%, Overall Kappa: 0.701.


44

Multispectral Landsat ETM Image Classification

The object-oriented classifier outperformed the pixel-based methods (ISODATA

& ML) when classifying the September 2000 Landsat imagery. Overall accuracy was

higher in both the 30 m (73.9%) and 15 m (90.7%) images (Table 13). However, wetland

identification accuracy was only better than the pixel-based methods when spatial

resolution was increased (73.7% producers accuracy, 66.7% users accuracy).

Segmentation parameters were taken from previous studies (Antunes et al., 2003; Fisher,

Gustafson, & Redmond, 2002; Gomes & Marcal, 2003; Meinel, Neubert, & Reder, 2001;

Schiewe, 2001) who also used multispectral satellite imagery and reported generally

similar accuracies for different land cover types using the object-oriented classifier. In

Figure 11, the results of the Landsat ETM image classification are shown side by side for

comparison. For full color maps of the classifications refer to Appendix: Maps.

ETM- IS0DATA classified ETM-ML ETM - 00 image


image classified image classified image

Figure 11. Results from Multispectral 15 Meter Landsat ETM Image Classification.
45

In Figure 11, light areas represent wetlands, black, water, and gray tones other

land cover types. Table 7 illustrates the confusion matrix for the pan-sharpened Landsat

and Maximum-Likelihood supervised classification. Table 8 then gives the accuracy

percentages for the before mentioned method according to class. Similarly, Table 9

represents the error matrix for the ISO DATA unsupervised classification of the Landsat

image in ERDAS Imagine and Table 10 explains the class producer and users accuracy

for the ISODATA method. Lastly, Table 10 shows the object-oriented classification

error matrix for the classified Landsat ETM+ and Table 11 the object-oriented class

producer and user accuracies.

Table 7

Error Matrix Landsat ETM 15 m Supervised Classification

Class Artificial Open Mixed Mixed


Row Crop Wetland Total
Surface Water Grasses Forest
Artificial
51 3 42 30 3 9 138
Surface
Open Water 0 15 0 0 0 0 15
Row Crop 0 0 39 0 0 0 39
Mixed
0 0 0 60 0 0 60
Grasses
Wetland 0 3 0 6 21 3 33
Mixed
0 0 0 3 6 6 15
Forest
Total 51 21 81 99 30 18 300
46

Table 8

Accuracy Percentages Landsat ETM I 5 m Supervised Classification

Class Producers Users


Kappa
Accurac:r Acrnraci'.
Artificial Surface 100.00 36.96 0.2404
Open Water 71.43 100.00 1.0000
Row Crop 48.15 100.00 1.0000
Mixed Grasses 60.61 100.00 1.0000
Wetland 70.00 63.64 0.5960
Mixed Forest 33.33 40.00 0.3617

Note. Overall Accuracy: 64.0%, Overall Kappa: 0.552.

Table 9

Error Matrix Landsat ETM I 5 m Unsupervised Classification

Class Artificial Open Mixed Mixed


Row Crop Wetland Total
Surface Water Grasses Forest
Artificial
38 0 0 2 0 0 40
Surface
Open Water 0 38 0 2 0 0 40
Row Crop 0 0 38 0 2 0 40
Mixed
0 0 0 40 0 0 40
Grasses
Wetland 0 0 6 12 16 6 40
Mixed
0 0 8 2 10 20 40
Forest
Total 38 38 52 58 28 26 240

Table 10

Accuracy Percentages Landsat ETM I 5 m Unsupervised Classification

Class Producers Users


Kappa
Accuraci'. Accuracl'.
Artificial Surface 100.00 95.00 0.9406
Open Water 100.00 95.00 0.9406
Row Crop 73.08 95.00 0.9362
Mixed Grasses 68.97 100.00 1.000
Wetland 57.14 40.00 0.3208
Mixed Forest 76.92 50.00 0.4393

Note. Overall Accuracy: 79.17%, Overall Kappa: 0.75.


47

Table 11

Error Matrix Landsat ETM 15 m Object Oriented Classification

Class Artificial Open Mixed Mixed


Row Crop Wetland Total
Surface Water Grasses Forest
Artificial
19 0 0 0 0 0 19
Surface
Open Water 0 20 0 0 0 0 20
Row Crop 0 0 23 0 0 0 23
Mixed
0 0 33 2 0 36
Grasses
Wetland 2 0 0 14 2 19
Mixed
0 0 0 0 5 18 23
Forest
Total 20 22 24 33 21 20 140

Table 12

Accuracy Percentages Landsat ETM 15 m Object Oriented Classification

Class Producers Users


Kappa
Accuracz: Accuracz:
Artificial Surface 100.0 95.0 0.942
Open Water 100.0 90.9 0.894
Row Crop 100.0 95.8 0.95
Mixed Grasses 91.7 100.0 1.0
Wetland 73.7 66.7 0.614
Mixed Forest 78.3 90.0 0.837

Note. Overall Accuracy: 90.7%, Overall Kappa: 0.888.

For the Landsat imagery, the ISODATA classifier performed as well as the

object-oriented one for classifying land-cover types other than Wetland and Mixed Forest

types. Overall accuracy for the unsupervised classifier was superior to the supervised

classifier in both the Landsat and CIR imagery, suggesting that a "cluster-busting"

method of determining land-cover classes is more accurate than traditional Maximum-

Likelihood classification. Also, the above results (Tables 7 through 12) and the overall

Landsat results (in Table 17) are based on classification of a partial September 2000

Landsat ETM+ image. A full scene for Black Hawk County was available for July of
48

1999, and was used for the seasonal matrix and used for the final Black Hawk County

wetlands map (see Appendix A: Map 7), but not for classifier comparison due to the

large amount of flooding present on the Landsat ETM+ July 1999 image.

Hyperspectral CASI Classification

Figure 11 and Tables 13 through 16 show the classified outputs and accuracy

assessment for the object-oriented and SAM classifiers for the CASI image. Average

wetland producers accuracy for the Spectral Angle Mapper classifier was 79.3%,

somewhat higher than in other comparable studies, such as Garono, Schooler, and

Robinson (2003). They achieved 74% accuracy with the ERDAS ISODATA

unsupervised algorithm to map tidal wetlands along the lower Columbia River with CASI

imagery. The greatest confusion between wetland classes for the SAM classifier was

between the flooded forest and mixed (upland forest) categories, and also with the

emergent (herbaceous) land cover class. This has also been found in many other studies,

due to the inability of the wavelengths to penetrate the vegetation canopies. Possible

solutions to this problem include RADAR (Bourgeau-Chavez et al., 2001) and LIDAR

(MacKinnon, 2001) to penetrate dense vegetation canopies. Confusion between

emergent herbaceous vegetative cover and wetland classes is also fairly well documented

(Ozemi, 2000). A workable solution to this problem is the extraction of individual plant

species from the hyperspectral imagery, which was not completed in this study due to

time constraints.

In the object-oriented classification, average wetland producers accuracy for the

object-oriented classifier was 97.6%. Object-oriented classifiers have been shown to


49

increase accuracy of wetland classification in multispectral imagery (Antunes et al.,

2003). The results of this classification appear to be valid also for hyperspectral imagery.

Wetland users accuracy for the object-oriented classifier (86.7%) was lower than

producers accuracy, mirroring the SAM classifier. Confusion between classes was

mainly limited to forested wetland and forested upland, which was also a problem with

the SAM classifier. The accuracy assessment is based on the 50-acre study area. The

comparison between these two classifiers revealed some interesting results. The object-

oriented classifier produced better overall accuracy (92.3% vs. 68.2%) and better wetland

class accuracy (97.6% vs. 79.3%) than the SAM classifier. Wetland Users Accuracy was

lower than Producers Accuracy in both classifiers, suggesting that these two methods are

more suited to detecting wetlands than for managing them from a users standpoint.

The last wetlands survey completed for Mahaska, Wapello, and Monroe counties

was conducted by the Iowa Department of Natural Resources in 1996 and is based upon

National High Altitude Program Color Infrared Photographs taken in 1983 and 1984.

The total wetland acreage for the entire hyperspectral image area according to that

information is 53 acres. For the 50-acre study area that was classified in this research,

2.6 acres of wetlands were identified from the last wetlands survey. Comparison of the

1996 wetlands survey against the 2002 1-m CIR aerial photo clearly shows that many

wetland areas have been developed or farmed or have shifted, necessitating an updated

survey. The SAM classifier for the 50-acre study area identified 4.1 wetland acres, 0.2 of

which were Open Water, 0.6 acres of Aquatic Vegetation, and approximately 3.3 acres of

Flooded Forest. The object-oriented classifier for this study identified 3.9 acres, 0.3 of
50

which were Open Water, 0.6 acres of Aquatic Vegetation, and approximately 3 acres of

Flooded Forest.

There are also issues with these two classifiers for wetland classification. Known

sources of bias include the fact that pixel-based classifiers such as SAM in hyperspectral

imagery tend to perform best when extracting individual spectra of individual plant

species (ERDAS, 2002; ENVI, 2002) and this study grouped different species of wetland

vegetation into generic land-cover classes, a fact that might have favored the object-

oriented classifier, which inherently classifies such object-based primitives. Other studies

have shown higher accuracies using hyperspectral imagery and pixel-based methods

(such as MNF, ration indices, etc.) to extract individual plant species spectra (Garono et

al., 2003; Underwood, 2003). File size in eCognition is also another limitation. The

version of eCognition that was used, 3.0, was unable to segment and classify files larger

than 100 MB, which in this study represented 15-20 acres of the total 969 acre image.

Therefore, the CASI image had to be divided into 60 different tiles. Definiens Imaging,

the parent of eCognition software, has told the researchers that this file size limitation

will be corrected in the release of eCognition 4.0. In Figure 12, the results of the

hyperspectral classification are shown.


51

0 40 80 160 Meters 0 40 80 160 Meters

Figure 12. Results from CASI Hyperspectral Image Classification. The left-hand image
was classified using the eCognition Object-Oriented Classifier and the right-hand image,
the ENVI Spectral Angle Mapper classifier. In the left-hand (object-oriented
classification) image, the dark tones represent open water, saturated soil, and upland
(non-wetland) forest. The lighter areas are aquatic vegetation and herbaceous cover. The
gray-tone classes represent dry bare soil and flooded (wetland) forest. On the right-hand
side image (Spectral Angle Mapper classification), dark tones represent open water,
saturated soil, and aquatic vegetation. Lighter areas represent upland and flooded forests,
and gray-tones herbaceous cover and dry bare soil.
52

Table 13

Confusion Matrix for SAM Classification (Ground Validation Pixels)

Open Aquatic Flooded Artificial Upland Flooded Herbaceous Mixed


Class Shadow Total
Water Vegetation Forest Surface Cro2 Cro2 Cover Forest
Unclassified 13 0 32 22 0 5 3 17 6 98
Open Water 230 0 0 192 0 0 0 0 0 422
Aquatic
0 318 0 0 0 0 0 0 0 318
Vegetation
Flooded 191 0 496
0 0 0 0 38 86 3
Forest
Artificial
0 0 0 496 0 0 0 0 319
Surface
Upland Crop 0 0 0 35 516 62 0 0 0 613
Flooded 0 2 0
0 0 0 0 0 0 280
Crop
Herbaceous 0
0 0 84 0 3 141 49 4 561
Cover
Mixed
0 0 125 0 199 188 0 421 12 387
Forest
Shadow 0 0 II 0 0 13 0 181 71 276
Total 243 318 443 745 715 274 182 754 96 3770

Table 14

Accuracy Percentages CASI SAM Classification

Class Prod. acc.(%) User acc.(%)


Open Water 94.65 54.5
Aquatic Vegetation 100.00 100.00
Flooded Forest 43.12 59.87
Artificial Surface 66.58 100.00
Upland Crop 72.17 84.18
Flooded Crop 68.61 45.58
Herbaceous Cover 77.47 50.36
Mixed Forest 55.84 75.04
Shadow 73.96 25.72
Wetland Avg. (3 classes) 79.3 71.5

Note. Overall Accuracy: 68.22%, Overall Kappa: 0.6373.


53

Table 15

Confusion Matrix for Object-Oriented Classification (Ground Validation Objects)


Open Aquatic Flooded Artificial Upland Flooded Herbaceous Mixed
Class Shadow Total
Water Vegetation Forest Surface Croe Croe Cover Forest
Unclassified 0 0 0 0 0 0 0 0 0 0
Open Water 5 0 0 0 0 0 0 0 0 5
Aquatic 0 0
0 19 0 0 0 0 0 19
Vegetation
Flooded 0
0 0 13 0 0 0 0 14
Forest
Artificial
0 0 0 10 0 0 0 0 0 10
Surface
Upland 0 0 20
0 0 0 0 20 0 0
Crop
Flooded
0 0 0 0 0 20 0 0 2 22
Crop
Herbaceous 0 0 0 0 19 0 0 19
0 0
Cover
Mixed
0 7 0 0 0 0 20 0 28
Forest
Shadow 0 0 0 0 0 0 0 0 6 6
Total 5 20 20 10 20 20 20 20 8 143

Table 16

Accuracy Percentage Classifications CASI Object-Oriented Classification

Class Prod. acc. (%) User acc. (%)


Open Water 100.0 100.0
Aquatic Vegetation 100.0 95.0
Flooded Forest 92.9 65.0
Artificial Surface 100.0 100.0
Upland Crop 100.0 100.0
Fl oode<l Crop 90.9 100.0
Herbaceous Cover 100.0 95.0
Mixed Forest 71.4 100.0
Shadow 100.0 75.0
Wetland Avg. (3 classes) 97.6 86.7

Note. Overall Accuracy: 92.3%, Overall Kappa: 0.912.

Overall Classifier Comparison

The overall classification accuracy for different classifiers is provided in Table

17. Accuracy comparisons between the classifiers were completed using the same areas;

for example, county-wide stratified random points for the CIR and Landsat images, and

the same 50-acre subset for the hyperspectral Eddyville image. Accuracies increased
54

(both for the wetland class and the overall average) when spatial resolution of the Landsat

imagery was sharpened with the panchromatic band; also, the unsupervised ISO DATA

algorithm performed better for overall accuracy than the supervised Maximum-

Likelihood classifier. This is consistent with the results of other studies (Ozemi, 2000).

The object-oriented classifier increased overall accuracy with the Landsat imagery over

the traditional pixel-based classifiers, but did not increase wetland-identification accuracy

until the spatial resolution was increased (see Table 13). The CIR imagery in general

performed poorly with all automated classifiers, suggesting that even though the spatial

resolution was very sharp, either more bands such as Landsat 4 & 5, (see Chen 2002), are

needed to detect vegetation, or seasonality played a role because the imagery was flown

in late April/early May of 2002 before the growing period of many wetland vascular

plants in the northeastern part of the state. The most accurate results came from the

hyperspectral object-oriented approach and the pan-sharpened Landsat object-oriented

approach.

The seasonal matrix of the pan-sharpened Landsat images produced lower

accuracies than anticipated, especially for identifying wetland areas. It did, however,

increase accuracies for row-crop cover and herbaceous cover. This may be due to the

large amount of flooding present in the July 1999 Landsat image. Landsat imagery

remains a valid choice for large-scale wetlands mapping projects, especially with the

added capability of the panchromatic band.


55

Table 17

Overall Classification Accuracy for Different Classifiers

HYPER- HYPER-
CIR CIR LSAT LSAT LSAT LSAT SPECTRAL SPECTRAL
CIR lm lm 15 m 15 m 15 m 15 m LSAT CASI 60 CASI 60
lm ISO- Max- ISO- Max- Pan Seasonal 30m cm cm
0-0 DATA Like DATA Like 0-0 Matrix 0-0 0-0 S.A.M.

Overall
Accuracy 73.2 59.7 57.9 79.17 64.0 90.7 67.3 73.9 91.7 68.2

Wetland
Producers 68.8 55.0 75.0 57.14 70.0 73.7 77.78 58.8 94.6 79.3
Accuracy

Wetland
Users 50.0 22.0 36.0 40.0 63.6 66.7 46.67 50.0 86.7 71.5
Accuracy

Kaeea 0.701 0.52 0.49 0.75 0.552 0.888 0.622 0.667 0.904 0.637

Note. 0-0: Object-Oriented Classifier, ISODATA: Unsupervised Classification, 120 Initial Classes

Max-Like: Maximum Likelihood Algorithm, S.A.M.: Spectral Angle Mapper Algorithm.

GIS-Based Restoration Model Results

The results of the wetland restoration model are as follows. Black Hawk County,

Iowa encompasses an area of 567 square miles, or 362,880 acres. From that initial

acreage, 56,729 acres were masked out as unsuitable based on the USGS Landcover

raster layer of the following classes: (a) Low Intensity Residential, (b) High Intensity

Residential, (c) Commercial/Industrial/Transportation, (d) Bare Rock/Sand/Clay, (e)

Quarries/Strip Mines/Gravel Pits, (f) Urban/Recreation Grasses, (g) Open Water, (h)

Woody Wetlands, and (i) Emergent Herbaceous Wetlands. The accuracy assessment for

that 1992 data set was made publicly available on March 17, 2004 (United States
56

Geological Survey, 2004). The overall accuracy for Black Hawk County was only 53%,

but for the classes masked out the accuracy was 60.4%. Urban areas were chosen as

unsuitable restoration areas as well as bare areas and existing wetlands. Landcover

classes left as suitable for restoration included: (a) Deciduous Forest, (b) Mixed Forest,

(c) Grasslands/Herbaceous, (d) Pasture/Hay, (e) Row Crops, and (f) Small Grains.

From the remaining 306,151 acres, 93 .4 acres in 10 parcels were also masked out

as they are recognized as wetland parcels by the county assessor's office. Non-urban

county roads along with a 30-meter buffer totaling 24,724 acres were also masked out to

eliminate right-of-way areas owned by the Iowa Department of Transportation (see

Berman et al., 2002). That left 281,334 acres or 440 square miles for wetland restoration

consideration. Based on the flow chart in Figure 8 on page 36, cells classified as having

soil that was hydric with poor drainage were given a score of 4 in the SSURGO soil data

layer. Cells that did not meet this criterion were eliminated from consideration, as

according to the federal definition of a wetland (see page one) a wetland must contain

hydric soil, hydrophytic vegetation, or be in an area where the water table saturates a

non-soil substrate or covers the area with shallow water periodically. As hydrophytic

vegetation would not necessarily be present in a disturbed land-cover area (such as an

agriculturally based one) and water table depth information was not available, the hydric

soil criterion was chosen as the ranking factor or Step 2 in the flowchart. Eliminating

cells that were not hydric resulted in narrowing the suitability area down to 121,271

acres. The next step was determining if the potential wetland restoration area was within

a buffer of 20 meters for a hydrological feature (stream) or 50 meters of the Cedar River,
57

as wetland areas are proven floodwater storage areas (Sierra Club, 2000) and wetlands

restored adjacent to hydrological features moderate stream temperature and reduce

erosion (Budlong, 2002). These cells were given a score of 1, and totaled 17,491 acres.

Step 4 included identifying cells that were adjacent to existing wetlands. For the wetland

areas, a 1996 Iowa Department of Natural Resources wetlands layer was used (based on

1983/84 aerial photos) instead of the updated Black Hawk County wetlands map

produced earlier in the research as the wetland producer and user accuracies were lower

(73.7 and 66.7% respectively) in the updated wetlands map. However, the model was run

using the updated wetlands map and produced results less than one standard deviation

from the mean as compared with using the older wetlands data, indicating no dramatic

shifts in wetland areas or total acreage, a fact also shown by the Black Hawk County

Wetlands timeline in Figure 13 on page 57. Cells that were adjacent to existing wetlands

were given a score of 2 (see also Hey & Philippi, 1999).

Lastly, cells that were adjacent to or contained within county conservation areas

were given a score of 3. The reasoning behind this is that wetlands have a greater chance

of being restored and are easier to manage if they are to be located in land already owned

or adjacent to county conservation land (S. Finegan, personal communication, May,

2003). The final equation from the methodology section was: (x = existing area index

total, y = soil index total, z = hydrology index total) RESTORATION POTENTIAL= [(x

* 0.85) + (y * 0.65) + (z* 0.40)]. Cell scores were computed using ArcGIS Spatial

Analyst raster calculator according to the above equation (for example, if a cell had a
58

perfect ranking, meeting all desirable criteria, [((3+2)*0.85) + (4*0.65) + (3*0.40)], it

would have a score of 8.05.

Three categories were then defined using a Jenks Natural Breaks method: Cells

with scores of 3.9 through 8.05 were ranked as most suitable areas, cells with scores of

2.7 through 3.8 were given a ranking of medium suitability, and cells with scores of 2.6

were given a ranking of low suitability. Cells with scores lower than 2.6 were deemed as

unsuitable or unclassified. For a map of these areas, refer to Map 9 in Appendix A.

There were not too many surprises in the results of the model, as all areas were close to

surface hydrological features and generally were in areas where wetlands were present

historically. The topography of the county does not vary greatly, and some areas have

been known to county conservation officials for some time as highly-suitable areas for

wetland restoration, such as the Crane Creek watershed and areas in the southeastern part

of the county along the Cedar River. What this study contributes, through the use of GIS,

is to demonstrate where restoration of wetlands could and should take place if county or

state resources become available. Table 18 displays a numerical summary of the

restoration model. Figure 13 references a timeline for wetland changes in Black Hawk

County.
59

Table 18

Results from GIS-Based Restoration Model

Cell TYPe Cell Total Area (acres)


Black Hawk County 362,880
Highest Suitability 2,971
Medium Suitability 34,307
Lowest Suitability 121,271
Unsuitable 204,331
USGS Landcover Mask 56,729
Wetland Parcel Mask 93.4
County Roads Buffer Mask 24,724
Hydric Poorly Drained Soil 121,271
Adjacent to Hydrology 17,491
Adjacent to Wetlands 30,590
Adjacent or Contained in County
7,170
Conservation Area

Wetlands Change in Black Hawk County

50000
~ 40000
~
< 30000
§ 20000
~ 10000
0 +-------=
1832 1983 1992 2004
Source: IDNR Source: NW! Source: USGS Source: Harken

Figure 13. Black Hawk County Wetlands Timeline.

As shown by the above timeline, Figure 13, wetlands have decreased in the past

twenty years in Black Hawk County. This is possibly due to natural variations in the

hydrological cycle, agricultural practices, or image bias. While the acreage amount of

decrease is not great, it still shows a need for restoration planning and implementation.

As Hey and Philippi (1999) note, wetlands can be restored to provide ecological benefits
60

(wildlife habitat, non-point pollution treatment, flood water storage) that have been lost.

They also noted that wetland restorations are most effective when the wetlands occupy

less than 10% of the area to be restored, as is the case in Black Hawk County where

wetlands currently account for only 5% of the county's surface area.

Web-Based Data Dissemination

The Black Hawk County wetland project homepage is available to the general

public at http://gisrl-9.geog.uni.edu/wetland/ (Figure 14). The homepage explains the

goals and objectives and also methodologies and protocols developed in this project. It

also provides a summary of results, links to other wetland sites, and a comprehensive list

of references. Also available on the website is a technical report published for the Iowa

Space Grant Consortium in January 2003.

Figure 15 shows a screen shot of the ArcIMS viewer. An ArcIMS-based web

page was created so stakeholders in the project as well as the general public could access

the results and use them for their own needs. According to ESRI (2003), ArcIMS is

software specifically designed to serve geographic data on the Internet, and to develop

Web pages that communicate with maps. Potential uses of the website include: (a)

landowners identifying parcels of land that would be highly suitable to restore wetlands,

(b) corroborating evidence for local government officials for conservation planning, and

(c) general information on wetlands in Black Hawk County for the public. Users of the

website can select different layers to display, as well as use built-in functions such as a

measuring, querying, and buffering tools.


61

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".t'•t«(j'J.aUtytMJntQW'lc:""".UdW. habJtat,and flX1 erotionCQ!lfrot. WettaA4' irl.low• t,4w dec:N>Ue4owr'$1$~inth• hm:2':IO yea:,. Th• lou ot
thr.-1111 rt:tn..i~ and bm~ftt• ,h,wr, & n«-dtomapan.d l'cWIJ:mtW'«li1.nd11:a k,w~r.,~flywht.ffeumnt. ~lti.nd ma.pt art:Ndl'lff.d,u tJthni".AH
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62

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63

CHAPTERS

CONCLUSION

In this study multispectral (CIR; ETM) and hyperspectral (CASI) images were

tested for wetland classification using different classifiers (Maximum-Likelihood,

ISODATA, Object-Oriented and Spectral Angle Mapper). The object-oriented classifier

produced superior results over traditional pixel-based classifiers (ISODATA; Maximum-

Likelihood) in multispectral imagery (73.7% vs. 57.14%; 70.0%) when mapping

wetlands but only when spectral resolution was increased (i.e., 15-m 6-band Landsat

imagery achieved superior results over 1-m 3-band Color Infrared Aerial photography)

and the spatial resolution of the Landsat imagery was increased (Pan-sharpened from 30-

m to 15-m).

The results for Eddyville also clearly showed that hyperspectral images enabled

more accurate wetland mapping than multispectral datasets when using the object-

oriented classifier (94.6%) and the SAM classifier (79.3%). The object-oriented

classifier in this case also performed better than the pixel-based (SAM) classifier. A

seasonal comparison of Landsat imagery to identify wetlands did not produce accurate

results, perhaps due to extensive flooding present in the summer (July) imagery.

The answers to the research questions from Chapter 1, Page 7, are as follows:

1. The Object-Oriented classifier was superior and more accurate in comparison

to the pixel-based Maximum-Likelihood and ISODATA for the delineation of wetlands

using multispectral imagery in Black Hawk County.


64

2. Data fusion between a Landsat ETM multispectral and ETM panchromatic

band increased the accuracy of wetland classification in Black Hawk County.

3. The Object-Oriented Classifier was more accurate than the SAM classifier for

identifying wetlands in the Eddyville hyperspectral (CASI) image.

4. Seasonality may play a significant role in classifying wetlands from remotely-

sensed imagery; however this study did not yield anticipated higher wetland detection

accuracies.

5. The most important variables for a GIS-based wetland restoration model in

Black Hawk County were: (a) hydric soil; (b) proximity to surface hydrological features;

(c) proximity to existing wetlands; and (d) proximity to existing conservation areas

owned by the county.

The results of the GIS-based model used in this study for wetland restoration in

Black Hawk County identified far more acres than initially believed were suitable for

such purposes (56% of county land area deemed unsuitable, 33% low suitability, 10%

medium suitability, 1% highly suitable). Two highly-suitable identified areas had already

been previously targeted by conservation officials for wetland easements or restorations

should funding become available.

Known sources of error include the fact that any wetland identified through

remotely-sensed imagery must be field-checked by a qualified ecologist or biologist in

order to qualify for legal status or protection. Wetlands in Black Hawk County showed a

slight decrease of roughly 1500 acres(+/- an error margin of 375 acres) from 1983-2003.

A web site with an ArcIMS viewer was created in order to disseminate information to the
65

stakeholders involved in the study, as well as the general public. Information available

on the website include: a summary of findings, maps of classification results, wetland

links, a comprehensive bibliography, as well as a technical report published for the Iowa

Space Grant Consortium. Available on the ArcIMS site is the ability to arrange different

layers, as well as measurement, buffer, and query tools.

In conclusion, it is the findings of this research that wetland classification from

multispectral imagery in the study area can be accurately completed if spatial resolution

is increased by data fusion, but not at the cost of spectral resolution. A non-parametric

object-oriented classifier can also identify freshwater inland wetlands for the study areas

of Black Hawk County and Eddyville more accurately than traditional pixel-based

(ISODATA, Maximum-Likelihood) ones. Hyperspectral imagery is preferable to

multispectral imagery in identifying freshwater inland wetlands because of increased

spectral resolution. The object-oriented classifier also identifies wetlands more

accurately using hyperspectral imagery, but has limitations for large file sizes.

Limitations of the research include: (a) image availability for the seasonal matrix,

(b) classifying only a subset of the multispectral and hyperspectral imagery with the

object-oriented classifier, and (c) a limited number of variables used in the GIS-based

restoration model.
66

Recommendations for Future Research

The future direction of this study lies in testing more non-parametric classifying

methods, such as a CART (classification and regression tree) algorithm since other

studies have shown it to be more accurate than a purely spectral based classifier

(Sugumaran, Pavuluri, & Zerr, 2003). In addition, greater long-term seasonality will also

be addressed, as other studies have stressed the importance of multi-seasonal variation in

detecting wetlands via remote-sensing imagery (Ozemi, 2000; Houhoulis & Michener,

2000). Future efforts for the restoration model include adding more variables, such as

land ownership, as well as field testing of high potential sites for evidence ofhydrophytic

vegetation and confirmation of hydric soils.


67

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75

APPENDIX

MAPS
76

2002 CIR Unsupervised Classification

0 8,000 16 ,000 32 ,000 Meter s

Class_Names - Mixed_Forest

- Fallaw/Bare Soil - Mi xed_Grasse s


Artificial_Surface - Open_Water

D Wetland

Map l: 2002 CIR Unsupervised Classification , Bl ack Hawk County


77

2002 CIR Supervised Classification

0 8,000 16,000 32,000 Meters

Clas s_Names ~ Mi xed_Forest


~ Fallaw/Bare Soil ~ Mixed_Grasses
Artificial_Surface ~ Open_Water

Wetland

Map 2: 2002 CIR Supervised Classification, Black Hawk County


78

2002 CIR Object-Oriented Classification

Land Cover type 1111 Herbaceous Wetlands ~t--·.........---·......


ut ___:-+-
.·1---..-.....-...---40.2 Miles

Ill Open Water 1111 Urban


~ Bare Rock/Sand 1111 Fallaw/Bare Fie lds
Ill Woody Wetland 1111 Mixed Grasses s
1111 Mixed Forest

Map 3: 2002 CIR Object-Oriented Classification, Black Hawk County


(Subset image, near Gilbertville)
79

2000 Landsat Unsupervised Classification

0 6,250 12,500 25,000 Meters

Class_Names 1111 Open_Water


1111 Mixed_Forest 1111 Row_Crop
1111 Mixed_Grasses C=:J Artificial_Surface
C=:J Wetland

Map 4: 2000 Landsat Unsupervised Classification, Black Hawk County


80

2000 Landsat Supervised Classification

0 7.000 14.000 28.000 Meters

Class_Names . . Row_Crop
. . Mixed_Forest Artificial Surface

. . Mixed_Grasses . . Open_Water
s
CJ Wetland

Map 5: 2000 Landsat Supervised Classification, Black Hawk County


81

2000 Landsat Object-Oriented Classification

0 6,500 13,000 26,000 Meters

Class_Names Ill Artificial_Surface N

Ill Mixed_Grasses Ill Row_Crop


Ill Mixed_Forest c=J Wetland s
Ill Open_Water

Map 6: 2000 Landsat Object-Oriented Classification, Black Hawk County


82

1999 Landsat Object-Oriented Classification

0 3.5 7 14 Miles

Class_Names C:J Wetlands


1111 Row_Crop/Mixed_Grasses C:=J Artificial_Surface s

1111 Open_Water 1111 Mixed_Forest

Map 7: 1999 Landsat Object-Oriented Classification, Black Hawk County


83

Object-Oriented Classifier Spectral Angle Mapper Classifier

0 40 BO 160 Meter s

-~,-'
LEGEND - Upland Crop
1111 Open Water (Wetland) - Flooded Fore st (Wetland)

- Floodplain Crop - Shadow


University of Northern Iow a
- Mixed Fore st - Aqua ti c Vegetat ion (Wetland) Dept. of Geography
January 200 4
c=J Artificial Su rfa ce - Herbaceo us

Map 8: 2001 CASI Object-Oriented Classification (left), Eddyville, lA


2001 CASI Spectral Angle Mapper Classification (right), Eddyville, [A
(16 acre subset of 50 acres)
84

Black Hawk County Roads

D 9,000 18,000 36,000 Meters

- Bla ck Hawk Co unty Polygon


Black Hawk County Road s
•-

Map 9: Bl ac k Hawk County Roads Layer Used in GIS-Based Model


85

Black Hawk County


Conservation Areas

0 9,000 18,000 36,000 Meters

- Black Hawk Coun ty Polygon


[==:J Black Hawk Coun ty Conservation Areas
·•·

Map 10: Black Hawk County Conservation Areas Layer Used in GIS-Based Model
86

Soil Survey Geographic


Database (SSU RGO)
Black Hawk County, IA

0 8,750 17,500 35,000 Meters

- SSU RGO BH C •·

Map 11: SSURGO Soil Coverage Layer Used in GIS-Based Model


87

Existing Wetland Areas 1983/84


Black Hawk County, IA

0 8,750 17,500 35,000 Meters

- Black Hawk County Polygon


Exi sting Wetland Areas
-• -

Map 12: NWI Wetl and Areas Layer Used in GIS -Based Restoration Model
88

Urban Areas and County Roads Mask

-~~e':i~•···········-·=·1
.a•i ....:.:• !1•••••••••• 1111•111111
1111!" ~, . . . . . . . . . . . . . . . . . .~.
U••·····•• 1111!111
~' 11•• "•• n••••• ••• n
~-~'lli• ••···•-•.1•~1
!:i!'(]II -
iilll111• 1iil
••r~11:, ~,-~..c•••••11••••••1.1
tnJ~ .•_,

--IQ
--- ~
Ill~a11,. -
~ ~'
-, ~~-• ·-····
•lwai~---·-1 ..,...11.11•--·-·
-~• -Ila;,... ,, .
.,• - •• 111•• 1 "Ifill - •• l! •• -
1111.• •-»• ;)111·~...
:1••~!-•11••···-·~•·-··1
.iiiiiiii.::.:a:'. • -•.,....,.•••-
,,.-1-.. ·-----·--
'- ••------··
• -•1r~•· ,~. .• ,...~
r-1-• '!"

1•11111
I
•lf,1·-111111·~~1l =-••··
1• - • ll• ••'-°111.~Wlil •--
• a1-• II
1 • ••=1~1111111
11
~• . ,a-•-
••::••··••11••··••t1"_.,..1,_••·
•• I . . . . . . . . :.

•••••••••11•••• • • a...,.,....:rl~
• • ••••• •• ll• ••••• B1j~lL..a~

0 9,000 18,000 36 ,000 Met ers


r - - - + - --+-------+----+-----+--+-------1-~

- Bla ck Hawk Coun ty Polygon ·• ·

Map 13 : Landcover and Roads Buffer Mask Layer Used in GIS-Based Restoration
Model
89

Low Suitability Potential


Wetland Restoration Areas
Black Hawk County, IA

D 9,000 18,000 36 ,000 Meter s

- Black Hawk Co unty Polyg on


·•

Map 14: Low Suitability Potential Wetland Restoration Areas identified by GIS-Based
Model
90

Medium Suitability Potential


Wetland Restoration Areas
Black Hawk County, IA

0 9,000 18,000 36,000 Meters

- Black Hawk Co unty Polygon


·• -

Map 15: Medium Suitability Potential Wetland Restoration Areas identified by GIS-
Based Model
91

High Suitability Potential


Wetland Restoration Areas
Black Hawk County, IA

0 9,000 18,000 36,000 Meters

- Black Hawk County Polygon


·•· •

Map 16: High Suitability Potential Wetland Restoration Areas identified by GIS-Based
Model

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