Combined Flooding and Water Quality Monitoring During Short Extreme Events Using Sentinel 2: The Case Study of Gloria Storm in Ebro Delta
Combined Flooding and Water Quality Monitoring During Short Extreme Events Using Sentinel 2: The Case Study of Gloria Storm in Ebro Delta
Combined Flooding and Water Quality Monitoring During Short Extreme Events Using Sentinel 2: The Case Study of Gloria Storm in Ebro Delta
XXIV ISPRS Congress (2022 edition), 6–11 June 2022, Nice, France
1 Centre Tecnològic de Telecomunicacions de Catalunya (CTTC/CERCA), Av. Carl Friedrich Gauss, 7. Building B4, 08860,
Castelldefels, Spain - (eduard.angelats, jesus.soriano)@cttc.cat
2 IRTA Marine and Continental Waters, Carretera Poble Nou Km 5.5, 43540, la Ràpita, Tarragona, Spain - (margarita.fernandez,
carles.alcaraz)@irta.cat
KEY WORDS: Disaster management, Monitoring, Flooding, Water Quality, Change detection, Sentinel-2.
ABSTRACT:
Short extreme events have significant impact on landscape and ecosystems in low-lying and exposed areas such as deltaic systems. In
this context, this paper proposes a combined methodology for the mapping and monitoring of the flooding and water quality dynamics
of coastal areas under extreme storms from Sentinel 2 imagery. The proposed methodology has been applied in a coastal bay of the
Ebro Delta (Catalonia, NE Spain) to evaluate jointly the impact of Gloria storm (January 2020) in land-flooding and water quality. The
experimental results show that the Gloria storm had a strong morphological impact and altered the water quality (chl-a) dynamics. The
results show a recovery in terms of water quality after some weeks but in contrast the coastal morphology did not show the same degree
of resilience. This paper is the first step of an overall goal that is to set the bases in a long term, for a workflow for rapid response and
continuous monitoring of storm effects in coastal areas and/or highly valuable ecosystems such as the Ebro Delta.
1. INTRODUCTION affects most of the Ebro Delta surface and induces morphological
disturbance in the coastal front and bays (Jiménez et al., 2011).
The nature of coastal areas makes them highly dynamic and Furthermore, increased discharge of the Ebro River, land run-off,
susceptible to extreme variations under anomalous weather and sediment suspension and transport in coastal waters suppose
circumstances. Particularly, low-lying areas such as deltaic a direct impact on the aquatic ecosystems and related economic
systems are highly vulnerable to extreme storms. The impact of activities such as fisheries or aquaculture (Berdalet et al., 2020).
the storms, and associated hazards (e.g. wave-driven, sea-level
rise hazards) induces morphodynamic processes such as beach This, together with the expected exacerbation of these trends
erosion or overwash (Jiménez et al., 2012) and flooding episodes under a climate change scenario has led to several studies
that may affect large extensions where multiple human uses assessing the effect of these events in the area. Some studies have
coexist (e.g. urban areas, agri-food industry, ecosystem services). been focused on reporting and documenting the events with
In addition to the physical impacts in the terrestrial ecosystem, social media and media pictures, visual interpretation of airborne
significant rainfall and strong winds related to extreme storms imagery, and reporting of the consequences (Jiménez et al., 2020,
increase run-off and turbulence in coastal waters, thus with an González et al., 2020). Alternatively, most scientific research
expected impact on water quality and aquatic ecosystems efforts have been focused on the investigation of flooding risk
(Hernández et al., 2020). A better understanding of the relation and coverage, and morphodynamics through numerical model
between storm events and landscape/ecosystem development is simulations under storm and climate change scenarios, and do not
needed. This is a key step for improving territorial and include reports on water quality dynamics (Amores et al., 2020,
emergency management strategies on storm-induced hazards Garcia et al., 2013, Alvarado-Aguilar et al., 2012). All this
assessment, preparedness, response, and environmental information is a highly valuable source of knowledge for
resilience monitoring. assessing the consequences of storm-induced hazards in the delta
contributing to improving risk, land, and emergency management
The Ebro Delta is an excellent case of study because supports strategies. However, there is still a gap for improvement in terms
important terrestrial and aquatic ecosystems, as well as economic of observation-driven methods for the monitoring of storm-
activities sensitive to extreme storms. It is a subsident area with induced hazards, complementing and/or enhancing the current
an unprotected coastline enclosing two coastal bays with high approaches in the area. Mainly, on the assessment of flooding
ecological and socio-economical value. The importance of storm events and associated morphodynamic changes under high-
hazards in the Ebro Delta in terms of magnitude and recurrency intensity storms over large areas, and the monitoring of water
has been increasing since the 90s with most hazardous storms quality parameters (e.g. Total Suspended Solids (TSS) or
characterized by low-pressure systems off the Ebro Delta coast chlorophyll-a concentration (chl-a)), when access to in situ
and eastern wave storms, usually accompanied by storm surges measurements may be limited. From this perspective, spaceborne
and heavy rainfall. Such events lead to a compound flooding that multispectral remote sensing is a unique source of data as it
* Corresponding author
This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper.
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ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume V-3-2022
XXIV ISPRS Congress (2022 edition), 6–11 June 2022, Nice, France
provides a synoptic view over large areas and frequent systematic overall goal that is to set the bases in a long term, for a workflow
observations. for rapid response and continuous monitoring of storm
emergencies in low deltaic and highly vulnerable areas such as
Among remote sensing platforms, the Sentinel-2 multispectral the Ebro Delta.
imagery satellites (S2) operated by the European Spatial Agency
(ESA) represent a breakthrough in terms of flooding and water 2. MATERIALS AND METHODS
quality monitoring. The S2 MultiSpectral Imagery (MSI) covers
the VIS-NIR and SWIR regions of the spectrum at 10, 20, or 60 2.1 Study area
m spatial resolution (depending on the spectral band) with a
frequency of 5 days, improving temporal and spatial resolutions
of prior similar platforms such as Landsat. Multispectral data or The Ebro Delta (Catalonia, NE Spain), with a total extension of
optical imagery can be used for both flood and water quality 32.500 ha is one of the largest wetlands in the Western
mapping (Caballero et al., 2020, Sobel et al., 2020, Goffi et al., Mediterranean region (Figure 1). It supports highly dynamic and
2020, Cavallo et al., 2021). productive ecosystems with great ecological and economical
value. Several protected areas (e.g. RAMSAR sites, UNESCO
Detection of flooding and land surface water change based on biosphere reserve, the Natura 2000 network) coexist with a
multispectral satellite imagery generally relies on the use of number of anthropic activities. Agriculture is the core of the
water-related indicators proposed as combinations in the VIS, economy with ~ 65 % devoted to rice production (Genua-Olmedo
NIR, or SWIR spectral regions in form of spectral index (Pekel et al., 2016). Inside Ebro Delta bays, the production of bivalves
et al., 2014). Overall, combinations of VIS/SWIR and constitutes also a major economic activity, although fisheries and
NIR/SWIR spectral bands provide for a clear diagnostic of water exploitation of saltworks are also part of the diverse economic
surfaces, showing positive values for flood conditions and activities in the area (Figure 1).
negative values for soil (both wet and dry) (Boschetti et al.,
2014). However, as the selected index response varies as a
function of the study area, water characteristics, environmental
and atmospheric conditions, the combination of multi-source
data is recommended for improving classification accuracy
(Acharya et al., 2018). Multiparameter classification methods
aim to reinforce the characterization by exploiting redundancy or
complementarity provided by multiple spectral features (Goffi et
al., 2020). Therefore, the integration of different band
combinations has been reported to improve the accuracy of land
cover mapping (including flooding and classification of dry and
mixed surfaces) through different segmentation techniques (e.g.
Cavallo et al., 2021, Tavus et al., 2020).
This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper.
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ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume V-3-2022
XXIV ISPRS Congress (2022 edition), 6–11 June 2022, Nice, France
currently presents a wave-dominated coast with strong reshaping for defining water (positive NDWIXU ) and non-water classes
processes (Sayol and Marcos, 2018), highly exposed to storms (negative NDWIXU) resulting in binary maps. This method aimed
and extreme events, subjected to massive flooding, beach to first differentiate 4 classes which may be water or non-water
erosion, and overwash episodes (Jiménez et al., 2020). From the and then solve the uncertainty of single images classification by
perspective of water quality, it highlights the importance of the time-series analysis of different classes accounting for different
semi-enclosed bays formed by the northern and southern hemi- types of water and surface state. It was implemented using a
deltas (Figure 1). Both coastal bays have a relatively small customized script developed for R software v3.6 (R Core Team,
surface, shallow waters (0-7 m), and narrow mouths connecting 2017).
them to the Mediterranean Sea. The bays harbour important
populations of seagrass and benthic organisms, as well as 2.4 Chl-a mapping
fisheries and shellfish farming activities, which are sensitive to
water quality deterioration due to storm episodes. The chl-a maps during the Gloria storm are part of a longer time
series (October 1st 2019, to September 30th 2021) in the area of
The results presented in this paper are focused on Alfacs Bay Ebro Delta (Figure 1 top). This subsection summarizes the
(Figure 1), the southern coastal bay where many of the threats methodology used to generate this time series of chl-a maps.
driven by storms in the Ebro Delta are observed. Alfacs bay
concentrates aquaculture, an extremely vulnerable piece of coast All available S2 L1C orbit R051 images during the two-year
heavily affected by erosion (Trabucador barrier), and La Banya period of interest were downloaded from the Copernicus Services
spit, a special Protection Area for birds including a dune system Data Hub (https://cophub.copernicus.eu/dhus/#/home). After
that is part of Ebro Delta Natural Park. image-by-image visual checking for clouds and shadows over the
Ebro Delta coastal waters, the valid images (Nimages = 210) were
2.2 Gloria storm pre-processed. This step included the resampling of the bands to
20 m pixel, the subset to the extent of the area of interest, and the
Gloria storm was a marine storm affecting the Ebro Delta region atmospheric correction specific for coastal waters, all
in January 2020 (19.01.20 – 23.01.20). It has been classified as implemented through the Graph Processing Tool of SNAP v8.0.
one of the most intense among the events in the region during the The atmospheric correction was done with the latest version of
last decades with immediate economic losses of several millions the Case 2 Regional Coast Colour processor (Doerffer, et al.,
of euros. During the event, the situation was dominated by a 2007, Brockman et al., 2016), here referred as to C2XC. It was
southern deep low-pressure system that generated sea level applied on all valid S2 images, with a fine-tuning of daily
surface elevation (up to 1 m) and strong easterly winds which auxiliary data (pressure, ozone, altitude, salinity, and water
induced wind waves (Amores et.al, 2020) with high significant temperature). For land/water segmentation, the valid pixel
height (maximum Hs > 7m) and heavy rainfall on land expression was set as a threshold on band B11 of S2 L1C images.
(maximum cumulative precipitation > 130 mm). The Gloria The threshold was defined independently for each image with the
storm had devasting effects on urban areas, agriculture fields, the histogram-based triangle method. The output of C2XC included
natural environment, and different crucial infrastructures such as Rrs at VIS-NIR S2 bands.
roads, becoming the most hazardous event in Ebro Delta in the
last decades. Field measurements (N = 146) were conducted along 26 dates, at
different locations including waters in Alfacs bay, Fangar bay,
2.3 Flooding mapping and the surrounding exterior Mediterranean sea. The
measurements corresponded to integrated water column samples,
A set of 11 S2A/B L2A (atmospherically corrected surface taken within a window of ±3 hours of S2 pass. For chl-a
reflectance) cloud-free images were visually filtered and determination, water samples were filtered through 0.4-0.6 µm
downloaded from Copernicus Open Acces Hub GF/F glass fiber filters, extracted using standard methods (Shoaf
(https://scihub.copernicus.eu/) accounting for dates pre-, during, and Lium, 1976), and calculated with Jeffrey and Humphrey
and post-Gloria storm. All S2 L2A images were subset to the (1975) equations.
Ebro Delta area (Figure 1) and resampled to 20 m pixel using the
Sentinel Application Platform (SNAP v8.0). The same tool was Then, the match-up exercise between field-measured chl-a data
then used for deriving two variants of Normalized Difference and C2XC Rrs was done using a quality-check procedure based
Water Index (NDWI), namely, NDWIGAO (Gao et al., 1996) and on 3x3 pixel-window centered at field measurements. The quality
NDWIXU (Xu et al., 2006). The NDWIGAO combines NIR (B8 check included the removal of pixels flagged inherently by
band centered at 832 nm) and SWIR (B11 band centered at 1614) C2XC, an additional outlier filtering using boxplot analysis and,
bands of S2 (eq. 1), while the NDWIXU applies a VIS/SWIR the removal of negative Rrs pixels. Only pixel windows with
approach combining Green (B3 band centered at 560 nm) and more than 4 pixels remaining were accepted for posterior
SWIR (B11) S2 bands (eq. 2). analysis. After this step and the rejection of cloud-affected S2
images, the number of valid field chl-a data was 73, ranging
between 0.1 – 8 mg/m3, along 14 different dates.
𝐵8 −𝐵11
NDWIGAO = (1)
𝐵8 +𝐵11
For chl-a estimation, a set of 11 band combinations (2 to 4
𝐵3 −𝐵11 spectral bands) in form of spectral indices (SI) were computed
NDWIXU = (2) for all valid match-ups. These SI included bands B1 (centered at
𝐵3 +𝐵11
443 nm) to B6 (centered at 740 nm) and exploit specific chl-a
These indexes were used later as input in an unsupervised k- absorption peaks in Blue and Red spectral regions, and/or use
means clustering to generate 4 classes for each image. Then, the Red Edge information for mitigating the effect of absorption by
mean and standard deviation of pixels within each class and SI (4 non-algal particles and yellow substances. For instance, common
classes × day-1 × number of dates; N = 44) were extracted and ocean colour algorithms based on Blue to Green ratios (O'Reilly
reclassified into two classes by means, again, of unsupervised k- and Werdell, 2019), the three-band model of Gitelson et al.
means clustering. The NDWIXU cluster centers were then used (2011), and the Normalized Difference Chlorophyll Index
This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper.
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ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume V-3-2022
XXIV ISPRS Congress (2022 edition), 6–11 June 2022, Nice, France
(Mishra and Mishra, 2012) were included among the tested SI. great concentrations of TSS is expected. Empirical algorithms, as
Chl-a was modelled with all of them. A 70 % of chl-a data was the one used, can perform well only inside their range of
used for model calibration (cal) and 30 % for validation (val). derivation and for the area for which they were derived. They are
The cal/val datasets were generated randomly. Models were more limited in their ability to discriminate between non-unique
developed for raw and log-transformed (when possible) Rrs and signals from parameters that may be covariant with chl-a, for
chl-a data (i.e. raw-raw, log-raw, log-log). Linear, linear instance, TSS (Matthews et al. 2012), which increases
piecewise (1 breakpoint), polynomial (2nd, 3rd, and 4th order), particularly during storm events. This could not be validated
logarithmic, power, and exponential models were tested. All the because no chl-a nor TSS data were available in such cases, but
process was repeated through 100 iterations, with varying cal/val it was observed in RGB composites that after strong winds or
datasets. For each model (Band Combination × Type of Fitting × storm events, the water of the bays turns darker brownish or
Iteration), performance was evaluated by means of the following whitish, suggesting higher TSS (e.g. in Figure 3 and 4B). In these
statistics: the Mean Average Error (MAE), the Root Mean cases, the selected model will tend to overestimate chl-a since the
Squared Error (RMSE), the Average Percentage Difference reflectance on B5 increases with great TSS, overlapping the
(APD), the BIAS (eq.2-5) and the Pearson’s r (r). The statistics absorption of chl-a in the Blue (Soriano et al., 2019) In these
were computed including calibration and validation datasets. cases, other empirical or semi-analytical algorithms may be more
accurate. However, it is important to highlight that the proposed
To generate the chl-a maps, all flagged pixels (C2XC flagging) methodology for chl-a retrieval is easy to replicate, and
or pixels with negative Rrs in any of the spectral bands of each straightforward using several software tools such as SNAP,
valid S2 image were removed. A mask was applied for avoiding which may be important for a wide part of the scientific
most shallow waters and the presence of seagrass, which make community related with ecosystems monitoring and modelling
the retrieval of chl-a more uncertain. Then, the model with the response but with few or no remote sensing skills.
best performance was applied to all valid images and pixels.
Those with negative chl-a value (residual) were set to 0 mg/m3 Nevertheless, further research should move towards a multi-
and, pixels with chl-a > 30 mg/m3 were removed (noData) given algorithm combination, suitable across different types of water
the higher uncertainty in so high concentrations. Pixels optical properties. The development of a blending algorithm
corresponding to the mussel rafts were masked out with a rafts’ requires accurately defining the optical water type (Moore et al.,
shapefile (Figure 1). 2014) accounting for the spectral shape, magnitude, and
distinctive Rrs spectral features. Furthermore, a greater amount
1
𝑀𝐴𝐸 = ∑𝑁
𝑖=1 |𝑀𝑖 − 𝑂𝑖 | (2) of field data is needed, covering all different scenarios, which
𝑁 were not represented in the current chl-a dataset.
𝑁
(𝑀𝑖 − 𝑂𝑖 )2
𝑅𝑀𝑆𝐸 = √∑ (3)
𝑖=1 𝑁
𝑁
|𝑀𝑖 −𝑂𝑖 |
𝐴𝑃𝐷 = ∑ ∗ 100 (4)
𝑖=1 𝑂𝑖
1
𝐵𝐼𝐴𝑆 = ∑𝑁
𝑖=1(𝑀𝑖 − 𝑂𝑖 ) (5)
𝑁
This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper.
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ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume V-3-2022
XXIV ISPRS Congress (2022 edition), 6–11 June 2022, Nice, France
succession of small emerged and submerged patches (Ozesmi difference between the 15th and 20th days after the storm and the
and Bauer, 2002). image of 5 days before the Gloria storm.
Nevertheless, it is important to remark that the spectral In La Banya spit (Figure 1), the most important effects of Gloria
distribution before and after an extreme even could be quite storm were observed on the eastern side, at the dune fields. In this
different. Additional research is needed for further validating the area, the barchan dunes in the shoreline side showed stability,
accuracy of the proposed methodology. For instance, the with no flooding detected (Figure 5). The inner dunes, however,
minimum number of images to be used must be defined. Also,
showed a more dynamic behavior, alternating flooding, and
the 4 initial k-means classes may be a constraint in more
heterogeneous environments, needing to explore the increasing drying of the northern and southern faces during the period of
of clusters number. Regarding the improvement in the detection study (Figure 5A-B). Where flooding is more intense, the inner
of small features, suitability for resampling to 10 m instead of 20 parts of La Banya spit were subjected to loss of volume
m pixel can be studied, albeit it will strongly depend on the native (Rodríguez-Santalla et al., 2021). The drying out of some of these
resolution of S2 bands. In addition, information on the sea level parts may be explained by the accretion due to sand blown from
simultaneously to the S2 pass must be considered in deeper the beach and dunes and trapped by vegetation growing on the
analysis.
foredune. This phenomenon is observed in Figure 5C, with most
of the dried area concentrated behind barchan dunes. This
highlights the importance of the barchan dunes for maintaining
the shoreline during a storm (Rodríguez-Santalla et al., 2021).
This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper.
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ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, Volume V-3-2022
XXIV ISPRS Congress (2022 edition), 6–11 June 2022, Nice, France
eastern Alfacs Bay, related to the Trabucador breaching (Fig. 4B) 4. CONCLUSIONS
and the shallow shelf formed behind it. This led to increased chl-
a concentrations, although the model could be overestimating This study presents a methodology for both chl-a (in water) and
flooding mapping (on land) based on parallel processing of
them in this scenario, as high TSS concentration is expected in Sentinel 2 multispectral imagery. The methodology has been
this area behind the Trabucador barrier breaching stretch. In the applied to the assessment of impacts of an extreme coastal storm
last date shown (10.01.20 – Figure 4C), chl-a concentrations affecting the Ebro Delta in January 2020. The Ebro Delta is a
were again closer to pre-storm concentrations (Figure 5C). suitable place to apply the methodology developed here since it
Different from the Trabucador barrier, the water quality showed shares common threats with other coastal regions and, more
signs of recovery in a short term. In the long-term, water quality specifically, with other deltas.
dynamics should be revised again since the breaching of the
Despite constraints related to the validation of flooding maps and
Trabucador barrier has important implications in the the uncertainty of chl-a retrieval under optical water types out of
morphodynamics and hydrodynamics of the bay (Gracia et al., the range of development of the model, the results obtained are
2013). These are major factors for the development of promising. The model presented for chl-a mapping showed an
phytoplankton populations related to the modulation of chl-a accuracy greater than 70 % and, the methodology proposed for
inside Alfacs Bay, with a direct effect on the farming of shellfish mapping of land water surface changes demonstrated great
(Soriano et al., 2019). agreement with visual interpretation from 10 m RGB imagery.
The exposed methodological development allowed assessing
changes both in water and land, through a well-explained
processing chain which can be easily implemented almost with
SNAP open software. Both, flooding delineation and water
quality mapping methodologies can be applied fast, allowing for
rapid evaluation of storm-related perturbances on terrestrial and
aquatic ecosystems, with particular importance in the
management of coastal areas. Sentinel 2 demonstrated great
capabilities for complementing current methods and supporting
management in diverse environments, through the potential for
conducting studies with integrated approaches, which is currently
a line to follow for achieving the sustainable development goals.
The research presented in this paper is one of the first steps with
Sentinel 2 of a long-term strategy to understand the ecosystem
response in Ebro Delta both in space and time in front of short
extreme events. Further research should include an improvement
of the current water quality modelling aiming to de-coupling TSS
from chl-a to improve chl-a estimation. The flooding mapping
must be validated, assessing the accuracy of the method, and
arising potential constraints or improvements not included in this
preliminary study. The proposed methodology is planned to be
extended to all Ebro Delta region and tested also in other short
extreme events that occurred recently such as Filomena storm
(January 2021).
ACKNOWLEDGEMENTS
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This contribution has been peer-reviewed. The double-blind peer-review was conducted on the basis of the full paper.
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XXIV ISPRS Congress (2022 edition), 6–11 June 2022, Nice, France
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