Scribd Logo
Upload

Welcome to Scribd!

  • 31 views

    Ds Resume

    Uploaded by

    dushyant kumar singh
    This document is a curriculum vitae for Deepayan Sarkar that outlines his education, employment history, teaching experience, publications, works in progress, software contributions, and awards. It provides extensive details on his academic and professional background.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd

    Ds Resume

    Uploaded by

    dushyant kumar singh
    31 views4 pages
    This document is a curriculum vitae for Deepayan Sarkar that outlines his education, employment history, teaching experience, publications, works in progress, software contributions, and awards. It provides extensive details on his academic and professional background.

    Original Title

    ds_resume

    Copyright

    © © All Rights Reserved

    Available Formats

    PDF, TXT or read online from Scribd

    Did you find this document useful?

    Is this content inappropriate?

    This document is a curriculum vitae for Deepayan Sarkar that outlines his education, employment history, teaching experience, publications, works in progress, software contributions, and awards. It provides extensive details on his academic and professional background.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Download as pdf or txt
    31 views4 pages

    Ds Resume

    Uploaded by

    dushyant kumar singh
    This document is a curriculum vitae for Deepayan Sarkar that outlines his education, employment history, teaching experience, publications, works in progress, software contributions, and awards. It provides extensive details on his academic and professional background.

    Copyright:

    © All Rights Reserved
    Download as PDF, TXT or read online from Scribd
    Download as pdf or txt
    You are on page 1of 4

    Curriculum Vitae - Deepayan Sarkar

    Email deepayan@isid.ac.in
    Web www.isid.ac.in/~deepayan, deepayan.github.io

    Education
    2000-2006 Ph.D (Statistics), University of Wisconsin–Madison.
    Dissertation topic: “On the Analysis of Optical Mapping Data”.
    1998-2000 M.Stat with distinction, Indian Statistical Institute
    1995-1998 B.Stat (Hons), Indian Statistical Institute

    Employment
    2015-Present Associate Professor, Theoretical Statistics and Mathematics Unit, In-
    dian Statistical Institute, Delhi.
    2009-2015 Assistant Professor, Theoretical Statistics and Mathematics Unit, In-
    dian Statistical Institute, Delhi.
    2006-2009 Postdoctoral Research Fellow in Computational Biology, Public Health
    Sciences at the Fred Hutchinson Cancer Research Center.

    Teaching
    2009-Present Statistical Inference, Programming and Data Structures, Pattern Recog-
    nition, Statistical Computing, Linear Models, Regression Techniques,
    Introductory Computer Programming.
    2004-2005 Co-instructor for the Summer Institute for Training in Biostatistics
    (SIBS) program at UW Madison.
    2000-2002 Teaching Assistant at UW Madison for Statistics 301 (Introduction to
    Statistics), Statistics 849 and 850 (Theory & Application of Regression
    & Analysis of Variance I and II ).

    Publications
    ˆ Aloke Dey and Deepayan Sarkar. A new family of orthogonal Latin hypercube
    designs. Australasian Journal of Combinatorics, 69(1):58–62, 2017.

    ˆ Arijit Chakrabarty, Rajat Subhra Hazra and Deepayan Sarkar. From random ma-
    trices to long range dependence. Random Matrices: Theory and Applications, 5(2),
    2016.
    doi:10.1142/S2010326316500088.
    ˆ Aloke Dey and Deepayan Sarkar. A Note on the Construction of Orthogonal Latin
    Hypercube Designs. Journal of Combinatorial Designs, 24(3):105–111, 2016.
    doi: 10.1002/jcd.21408.

    1
    ˆ Arijit Chakrabarty, Rajat Subhra Hazra and Deepayan Sarkar. Limiting spectral
    distribution for Wigner matrices with dependent entries. Acta Physica Polonica B,
    46(9):1637–1652, 2015.
    doi:10.1142/S2010326316500088.
    ˆ Aditya Gupta, Michael Place, Steven Goldstein, Deepayan Sarkar, Shiguo Zhou,
    Konstantinos Potamousis, Jaehyup Kim, Claire Flanagan, Yang Li, Michael A. New-
    ton, Natalie S. Callander, Peiman Hematti, Emery H. Bresnick, Jian Ma, Fotis Asi-
    makopoulos, and David C. Schwartz. Single-molecule analysis reveals widespread
    structural variation in multiple myeloma. Proceedings of the National Academy of
    Sciences (USA), 112(25):7689–7694, 2015.
    ˆ Deepayan Sarkar. R Graphics. In Handbook of Statistics 32: Computational Statis-
    tics with R, M. B. Rao and C. R. Rao (Editors). Elsevier, Oxford. 2014.
    ˆ India Project Team of the International Cancer Genome Consortium. Mutational
    landscape of gingivo-buccal oral squamous cell carcinoma reveals new recurrently-
    mutated genes and molecular subgroups. Nature Communications 4:2873, 2013.
    doi: 10.1038/ncomms3873

    ˆ Mohana Ray, Steve Goldstein, Shiguo Zhou, Konstantinos Potamousis, Deepayan


    Sarkar, Michael A. Newton, Elizabeth Esterberg, Christina Kendziorski, Oliver
    Bogler, and David C. Schwartz. Discovery of structural alterations in solid tu-
    mor oligodendroglioma by single molecule analysis. BMC Genomics 14:505, 2013.
    doi: 10.1186/1471-2164-14-505

    ˆ Deepayan Sarkar, Steve Goldstein, David C. Schwartz, and Michael A. Newton.


    Statistical Significance of Optical Map Alignments. Journal of Computational Bi-
    ology. 19(5): 478–492, 2012.
    doi: 10.1089/cmb.2011.0221.
    ˆ Emily C. Knouf, Kavita Garg, Jason D. Arroyo, Yesenia Correa, Deepayan Sarkar,
    Rachael K. Parkin, Kaitlyn Wurz, Kathy C. O’Briant, Andrew K. Godwin, Nicole
    D. Urban, Walter L. Ruzzo, Robert Gentleman, Charles W. Drescher, Elizabeth
    M. Swisher, and Muneesh Tewari. An integrative genomic approach identifies p73
    and p63 as activators of miR-200 microRNA family transcription. Nucleic Acids
    Research, 40 (2):499–510, 2012.
    doi: 10.1093/nar/gkr731.

    ˆ Brian Teague, Michael S. Waterman, Steven Goldstein, Konstantinos Potamousis,


    Shiguo Zhou, Susan Reslewic, Deepayan Sarkar, Anton Valouev, Christopher Churas,
    Jeffrey M. Kidd, Scott Kohn, Rodney Runnheim, Casey Lamers, Dan Forrest,
    Michael A. Newton, Evan E. Eichler, Marijo Kent-First, Urvashi Surti, Miron Livny,
    and David C. Schwartz. High-resolution human genome structure by single-molecule
    analysis. Proceedings of the National Academy of Sciences (USA), 107(24):10848–
    10853, 2010.
    ˆ Yi Cao, Zizhen Yao, Deepayan Sarkar, Michael Lawrence, Gilson J. Sanchez, Maura
    H. Parker, Kyle L. MacQuarrie, Jerry Davison, Martin T. Morgan, Walter L. Ruzzo,
    Robert C. Gentleman, Stephen J. Tapscott. Genome-wide MyoD Binding in Skeletal

    2
    Muscle Cells: A Potential for Broad Cellular Reprogramming. Developmental Cell,
    18(4):662–674, 2010.
    ˆ Kyongryun Lee, Florian Hahne, Deepayan Sarkar, Robert Gentleman. iFlow: A
    Graphical User Interface for Flow Cytometry Tools in Bioconductor. Advances in
    Bioinformatics vol. 2009, Article ID 103839, 3 pages, 2009.
    doi:10.1155/2009/103839.

    ˆ F. Hahne, N. Le Meur, R. R. Brinkman, B. Ellis, P. Haaland, D. Sarkar, J. Spidlen,


    E. Strain, R. Gentleman. flowCore: a Bioconductor package for high throughput
    flow cytometry. BMC Bioinformatics 10(1):106, 2009.
    ˆ D. Sarkar, R. Parkin, S. Wyman, A. Bendoraite, C. Sather, J. Delrow, A. Godwin,
    C. Drescher, W. Huber, R. Gentleman, and M. Tewari. Quality assessment and
    data analysis for microRNA expression arrays. Nucleic Acids Research, 37 (2): e17,
    2008.
    ˆ Deepayan Sarkar. Lattice: Multivariate Data Visualization with R. Springer, New
    York, 2008. URL: http://lmdvr.r-forge.r-project.org. ISBN 978-0-387-75968-
    5.
    ˆ D. Sarkar, N. Le Meur, R. Gentleman. Using flowViz to visualize flow cytometry
    data. Bioinformatics 24(6):878–9, 2008.
    ˆ Deepayan Sarkar. Extending lattice: using generics and methods to implement new
    visualization methods within the Trellis framework. Computational Statistics, 2008.
    doi:10.1007/s00180-007-0098-0.
    ˆ V. J. Carey, J. Gentry, D. Sarkar, R. Gentleman, and S. Ramaswamy. SGDI:
    system for genomic data integration. In Proceedings of the Pacific Symposium on
    Biocomputing 2008 141–152, 2008.

    ˆ T. Chiang, D. Scholtens, D. Sarkar, R. Gentleman, W. Huber. Coverage and error


    models of protein-protein interaction data by directed graph analysis. Genome
    Biology, 8 (9):R186, 2007.
    ˆ M. A. Newton, A. Noueiry, D. Sarkar, P. Ahlquist. Detecting differential gene
    expression with a semiparametric hierarchical mixture method. Biostatistics, 5
    (2):155–176, 2004.

    ˆ M. G. Edwards, D. Sarkar, R. Klopp, J. D. Morrow, R. Weindruch, T.A. Prolla.


    Age-related impairment of the transcriptional responses to oxidative stress in the
    mouse heart. Physiological Genomics 13 (2):119-127, 2003.
    ˆ Deepayan Sarkar. Some Notes on lattice. Proceedings of the 3rd International
    Workshop on Distributed Statistical Computing, 2003.
    ˆ Deepayan Sarkar. Lattice. R News 2/2:19–23, 2002.

    3
    Works in Progress
    ˆ Kaustav Nandy and Deepayan Sarkar. Bayesian Image Reconstruction using Locally
    Dependent Gradient Priors and Efficient Sparse Matrix Computations.
    https://www.isid.ac.in/~deepayan/pubs/preprints/brecon.pdf
    ˆ Siva Athreya, Deepayan Sarkar, and Steve Tanner. Probability and Statistics with
    Examples using R. https://www.isibang.ac.in/~athreya/psweur/

    Software
    ˆ Deepayan Sarkar and Felix Andrews (2022). latticeExtra: Extra Graphical Utilities
    Based on Lattice. R package version 0.6-30.
    http://latticeextra.r-forge.r-project.org/
    ˆ Deepayan Sarkar (2021). lattice: Trellis Graphics for R. R package version 0.20-45.
    https://CRAN.R-project.org/package=lattice
    ˆ Deepayan Sarkar and Kaustav Nandy (2020). Interface to OpenCV Image Process-
    ing Routines. R package version 0.1-1.
    https://github.com/deepayan/rip
    ˆ Deepayan Sarkar and Kaustav Nandy (2020). Image Reconstruction Utilities. R
    package version 0.1-2.
    https://github.com/deepayan/rip

    ˆ Deepayan Sarkar (2018). hmmcount: Fitting Hidden Markov Models for Count
    Data. R package version 0.1-1.
    https://github.com/deepayan/hmmcount

    Awards
    ˆ The 2004 John M. Chambers Statistical Software Award for
    “Lattice: A package implementing Trellis Graphics in R”

    New Delhi, January 2023

    You might also like