Biochemical Engineering Journal
Biochemical Engineering Journal
Biochemical Engineering Journal
A R T I C L E I N F O A B S T R A C T
Keywords: PET hydrolase (PETase), discovered in Ideonella sakaiensis, is a promising agent for the biodegradation of
Plastic biodegradation polyethylene terephthalate (PET) capable of PET decomposition under mild reaction conditions with limited
Immobilization of biocatalyst stability and productivity. Here, the immobilization of His-tagged PETase was achieved by synthesizing enzyme-
Biomimetic mineralization
inorganic nanoflowers, PETase@Co3(PO4)2, which was designed based on the principle of biomimetic miner
alization. Immobilization of PETase onto nanostructured Co3(PO4)2 enjoys high enzyme loading and low mass
transfer inhibition due to large specific surface area, high movement speed, and large surface curvature caused
by small particle size. The nano-effect of inorganic carriers materialize the 10 ◦ C optimum temperature swelling
of the immobilized PETase with enhanced pH tolerance (6.0–10.0) than the free counterpart. The long-duration
reaction showed that the productivity of terephthalic acid (TPA) was 3.5 times higher than that of the free
enzyme. PETase@Co3(PO4)2 still retained 75% of the initial activity after 12 days compared with the free en
zymes, which showed almost no activity. The excellent and stable catalytic performance of PETase@Co3(PO4)2
with low cost demonstrates the synthetical usefulness of immobilization via biomimetic mineralization in the
enzyme utilization in industrial PET depolymerization.
* Corresponding author at: CAS Key Laboratory of Green Process and Engineering & State Key Laboratory of Biochemical Engineering, Institute of Process En
gineering, Chinese Academy of Sciences, 1, Zhongguancun Bei-er-tiao, Haidian District, Beijing 100190, PR China.
E-mail address: jmxing@ipe.ac.cn (J. Xing).
https://doi.org/10.1016/j.bej.2021.108205
Received 13 June 2021; Received in revised form 14 August 2021; Accepted 3 September 2021
Available online 10 September 2021
1369-703X/© 2021 Elsevier B.V. All rights reserved.
Y. Jia et al. Biochemical Engineering Journal 176 (2021) 108205
for the binding of the enzyme towards its polymeric substrate. In 2016, a tagged PETase gene was transformed to E. coli BL21 (DE3) cells. Suc
PET-specific hydrolase named PETase (EC: 3.1.1.101, PDBID:5XJH), cessful transformants were cultured overnight (1%, v/v) in 50 mL Luria-
identified from bacterium Ideonella sakaiensis strain 201-F6, exhibits Bertani (LB) medium containing 50 mg/L kanamycin at 37 ◦ C. 0.6 mM
high depolymerization activity against PET films under mild reaction isopropyl-β-D-thiogalactopyranoside (IPTG) was added to induce the
conditions [14]. However, its instability during the long-term storage His-tagged PETase expression after the culture OD600 value reached 2.4.
and plastic depolymerization process hinders its application in industrial After induction at 21 ◦ C for 36 h, the mixture was centrifuged for 5 min
large-scale PET biodegradation. at 4 ◦ C. The collected cells were resuspended in a Lysis buffer composed
Immobilization of PETase using the facile methods is a suitable so of sodium phosphate (20 mM), imidazole (20 mM), and NaCl (0.5 M)
lution to the abovementioned problems. In the past few decades, with pH 7.4. After that, the resuspended cells were disrupted by an ul
immobilized enzymes influenced by carrier choices have demonstrated trasonic homogenizer at 4 ◦ C. The lysate containing the PETase enzyme,
superior performance due to their higher stability, better reusability, was collected via centrifugation at 4 ◦ C for 20 min after sonication.
and easier separation from the reaction mixture than their free forms Subsequently, the clear lysate was loaded onto the His-tagged nickel
[15]. Traditional immobilization approaches mainly include three column (Cytiva, America) for purification. A wash buffer (sodium
groups, binding to supports, carrier-free insolubilized enzyme aggre phosphate (20 mM), imidazole (20 mM), NaCl (0.5 M), pH 7.4) was used
gates, and entrapment in polymer materials [31]. Compared with to wash the column. Elution buffer (sodium phosphate (20 mM), imid
traditional materials, nanostructures can stabilize enzymes for a long azole (500 mM), NaCl (0.5 M), pH 7.4) was used to elute the bound
time in different systems with nano-effects such as the small size and the proteins. The purification process was conducted according to the pre
large surface curvature of the nanoparticles [16]. vious literature [22]. Sodium dodecyl sulfate polyacrylamide gel elec
Recently, the biomimetic mineralization process has caught many trophoresis (SDS-PAGE) checked the purity of the purified PETase
eyeballs with its ease operation, ultrahigh enzyme activity recovery rate, enzyme.
mild reaction conditions, and the specially enhanced stabilization effect
of enzyme− inorganic hybrid nanoflowers on enzymes component [17]. 2.2.2. Preparation of cobaltous phosphate nanoparticles
Unlike any traditional immobilization method, the biomimetic miner Cobaltous phosphate nanoparticles were synthesized according to
alization process is a new immobilized enzyme technology accompanied the previous reports [21]. Briefly, Co(NO3)2.6 H2O was added to 10 mM
by inorganic salt precipitation. A low-concentration buffer is used to phosphate-buffered saline (PBS) solution (10 mM, pH 7.4) with 10 mM
slow down the rate of inorganic salt formation, with enzyme molecules Co2+ as a final concentration. After complete oscillation, the mixture
introduced in the reaction to allow inorganic salt precipitation to adhere turned purple and pink floccules began to appear. Subsequently, the
to the enzyme slowly [24]. Then, embedding was carried out to mixture was incubated for 36 h at room temperature. After washing 3
immobilize of the enzyme. The method utilizes the specific chelation of times using ultrapure water, the cobaltous phosphate nanoparticles
the imidazole group in his-tag exposed on the protein surface and metal were obtained by suspension with a certain amount of ultrapure water.
ions to immobilize the protein, whose affinity then be purified. The
inorganic nanoparticles as carriers reduced the steric hindrance and 2.2.3. Preparation of PETase-inorganic hybrid nanoflowers
substrate diffusion limiting. Following the protein-inorganic PETase@Co3(PO4)2 nanoflowers were synthesized by mixing crude
(Cu3(PO4)2) hybrid system by Ge et al. [18], and subsequently, some enzyme (10 mL), PBS (90 mL, 10 mM), and Co(NO3)2.6 H2O (0.291 g),
scientists synthesized several other hybrid nanoflowers using different then incubated at 25 ◦ C for 60 h. After that, they were collected by 3
inorganic or organic components for the efficient immobilization of cycles of centrifugation (6500 rpm) for 5 min, and subsequently, the
hydratase, lipase and transaminase [19–21]. Encouraged by these early produced nanoflowers were washed with ultrapure water.
achievements, a biomimetic mineralization strategy that introduces an
affinity tag at the N-terminal of the PETase to realize the purification 2.2.4. Tryptophan fluorescence emission of PETase-inorganic hybrid
and immobilization of the enzyme was adopted. PETase flower-like nanoflowers and free PETase
cobalt phosphate nanoparticles were produced by the nucleation reac The free PETase and PETase-inorganic hybrid nanoflowers were
tion of the cobalt ions and PETase enzyme that was assembled on the characterized by tryptophan fluorescence measurements. The fluores
surface of particles. Catalytic activities and stabilities of the free and cence spectrum was recorded at the same enzyme concentration. The
immobilized PETase toward PET films were studied. The reusability excitation wavelength was 230 nm and emission fluorescence were
efficiency and storage performance of the immobilized PETase enzyme measured from 280 nm to 600 nm using Microplate Reader (Infinite
were also examined. M200, Tecan Japan Co., Ltd., Kawasaki, Japan).
2. Experimental
2.3. Enzyme activity assay
2.1. Materials
2.3.1. Enzyme assays for 4-nitrophenyl butyrate
The complete gene sequence of PETase from Ideonella sakaiensis A mixture of 49 mL phosphate buffer (100 mM, pH 7.5) and 1 mL of
strain 201-F6 (Genbank GAP38373.1) was codon-optimized and syn p-nitrophenyl butyrate(p-NPB) stock solution (4 mM, 0.084 g in abso
thesized, then inserted into the target vector pET-30a (+) for the lute ethanol) was reacted well, then 50 μL of the enzyme solution was
expression in Escherichia coli BL21 (DE3). For immobilized PETase, a 6x added to a cuvette containing 1 mL of p-NPB solution and mixed by
His tag was added into the N-terminal of its sequence. The sequence of pipetting. The absorbance at 400 nm was measured at 35 ℃ using
the resulting plasmids was confirmed using Sanger sequencing at Gen HITACHI U-2910 spectrophotometer (Japan) with a measured absor
Script China, Inc. Acetonitrile (HPLC grade) was purchased from bance that can be availed to calculate units of lipase activity (U) ac
Shanghai Macklin Biochemical Co., Ltd. (China). All other chemicals of cording to Eq. (1). One unit of PETase activity was defined as the amount
analytical grade were purchased from Sigma-Aldrich Trading Co. Ltd. of enzyme required to hydrolyze 1 μmol of substrate per minute [32].
(Shanghai, China) unless otherwise stated. For the activity measurement of the enzyme, the final enzyme activity
(Ufinal ) is defined as the absorbance change caused by the addition of
2.2. Preparation of PETase@Co3(PO4)2 enzyme minus the absorbance change caused by the same reaction
system without enzyme. In case of PETase@Co3(PO4)2, the final enzyme
2.2.1. Expression and purification of His-tagged PETase activity is defined as the absorbance change caused by the addition of
The recombinant plasmid pET-30a(+) (Scheme S1) carrying the His- the enzyme minus the absorbance change caused by the reaction system
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Y. Jia et al. Biochemical Engineering Journal 176 (2021) 108205
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Y. Jia et al. Biochemical Engineering Journal 176 (2021) 108205
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Y. Jia et al. Biochemical Engineering Journal 176 (2021) 108205
Fig. 4. Optimum temperature(a) and pH (b) of PETase@Co3(PO4)2 and free PETase. Thermal stability(c) and pH stability(d) of PETase@Co3(PO4)2 and free PETase.
X-ray photoelectron spectroscopy (XPS) was performed to investi temperature and pH indicated the higher tolerance of the PETase@
gate the surface element composition and chemical bonds of PETa Co3(PO4)2 towards changed of temperature and pH with more excellent
se@Co3(PO4)2, whose survey scan displayed five characteristic peaks at stability than its free form. These phenomena might be ascribed to the
782, 531, 400, 285 and 134 eV, with their corresponding to Co, O, N, C specific His-tags affinity to Co2+ that failed to affect protein stability
and P, respectively (Fig. S4) suggesting the organic-inorganic hybrids of with favorable changes in secondary structure, climbed PETase rigidity,
particles. Then, high-resolution XPS spectra were obtained for Co, O, and protection on the conformation of PETase during extreme envi
and C, chimed with the previous literature [20]. The N2 ronmental conditions. The maximum enzyme activity of PETase@
adsorption-desorption isotherms for both PETase@Co3(PO4)2 and Co3(PO4)2 and free enzyme measured under optimal temperature and
Co3(PO4)2 nanoflowers were type III curves (Fig. S5), which indicated pH conditions were 4102 U/mL and 4411 U/mL respectively. The
that the holes in the materials are slit holes formed by accumulated of higher steric hindrance between the immobilized PETase and the sub
flake particles [25]. The pore-size distribution plot was calculated by the strate than that of the free enzyme led to the slightly lower enzyme
Barrett-Joyner-Halenda (BJH) absorption method, revealed the average activity of the immobilized enzyme than that of the free one [30].
pore size of Co3(PO4)2 and PETase@ Co3(PO4)2 15.1 nm and 16.0 nm,
respectively. The specific surface area and cumulative volume of pores
3.4. . Stability and reusability assay
were 32.5 m2g− 1 and 0.13 cm3g− 1 for Co3(PO4)2, and 42.4 m2g− 1 and
0.17 cm3g− 1 for PETase@ Co3(PO4)2, respectively. The variation of
The reaction rate usually increases as temperature climbs within a
these parameters of PETase@Co3(PO4)2 compared with Co3(PO4)2
specific range, but higher temperature values can quickly destroy the
confirmed the successful immobilization of PETase.
structure and active site of the enzyme. Therefore, its ability to resist
high temperatures is a crucial parameter for performance evaluation of
3.3. Optimum temperature and pH the immobilized enzyme. Fig. 4c showed the thermal stabilities of free
and immobilized PETase. After being incubated at 40 ◦ C for 3 h, the
The effects of temperature and pH on the activity of PETase and immobilized PETase@Co3(PO4)2 still held 94.4% primary activity while
immobilized PETase@Co3(PO4)2 were investigated. Fig. 4a indicated the free PETase kept 57.3% only. After incubation at 45 ◦ C for 3 h, the
the optimum pH for both free PETase and immobilized PETase@ residual activity of free PETase maintained 17.2% primary activity,
Co3(PO4)2, 7.0, with PETase@Co3(PO4)2 surprisedly presenting a more compared to 82.8% for the immobilized PETase@Co3(PO4)2. The pH
extensive pH range of 6.0–10.0 than that of free PETase. The biomineral stability results of free PETase and immobilized PETase@Co3(PO4)2 are
surface could buffer the microenvironment near PETase by maintaining shown in Fig. 4d. At pH values of 4.0 and 10.0, the activity of free en
neutral pH even under extreme pH conditions [26]. The optimum zymes was dropped sharply compared with that after 5 h of incubation.
temperature of the immobilized PETase@Co3(PO4)2, 45 ◦ C, was 10 ◦ C In contrast, the PETase@Co3(PO4)2 retained 67.6% of the original ac
higher than that of the free enzyme. The shifted of the optimum tivity at pH 10.0% and 62.3% at pH 4.0 after incubation for 4 h. Clearly,
5
Y. Jia et al. Biochemical Engineering Journal 176 (2021) 108205
Fig. 5. Storage and reusability results. (a) Storage stability studies of free PETase and PETase@Co3(PO4)2 nanoflowers. (b) Reusability of immobilized PETase.
Fig. 6. SEM photographs of bottle-grade PET surface. Untreated (a), treated with PETase@Co3(PO4)2 (b) and Co3(PO4)2 for 48 h (c), treated with free PETase for
48 h (d), and treated with free PETase for 7 days (e).
Fig. 7. The hydrolysis products concentration after reacting PETase enzyme and immobilized PETase with PET particles (a) and amorphous PET film (b) for 48 h
at 30 ◦ C.
6
Y. Jia et al. Biochemical Engineering Journal 176 (2021) 108205
PETase@Co3(PO4)2 showed significant improvement in thermal stabil CRediT authorship contribution statement
ity and pH tolerance of the enzyme compared to that of the free PETase.
The limitedly maintained enzyme structure by the high nanopore cur Yunpu Jia: Conceptualization, Methodology, Validation, Data
vature stably immobilized the enzyme, keeping high catalytic activity curation, Writing – original draft, Writing – review & editing. Nadia A.
even in extreme environments [27]. Samak: Methodology, Writing – review & editing. Xuemi Hao: Writing
To test the storage stability, free PETase or immobilized PETase@ – review & editing, Supervision. Zheng Chen: Validation. Gama Yang:
Co3(PO4)2 nanoflowers were incubated in PBS solution at room tem Validation. Xuhao Zhao: Validation. Tingzhen Mu: Validation. Mao
perature. Fig. 5 indicated that the immobilized PETase@Co3(PO4)2 only hua Yang: Validation. Jianmin Xing: Conceptualization, Writing –
decreased 25% of its residual activity after storage at room temperature review & editing, Supervision, Project administration.
for 12 days compared with the almost inactive free enzymes. For the
reusability, PETase nanoparticles minimizing alterations in structure
Declaration of Competing Interest
and enzyme active sites enabled 70.2% retained residual activity to 4-
nitrophenyl butyrate of the immobilized PETase@Co3(PO4)2 after 10
The authors declare that they have no known competing financial
cycles of use [17].
interests or personal relationships that could have appeared to influence
In order to compare the degradation ability of PETase@Co3(PO4)2
the work reported in this paper.
and free PETase on PET, post-consumed bottle-grade PET was used as
the substrate. The PET degradation reaction was terminated by
Acknowledgment
removing the PET material from the enzymatic decomposition reaction
system after 48 h at 35 ◦ C with the PET films washed and dried, and
The authors gratefully acknowledge the financial support provided
their surface morphology examined by SEM (Fig. 6). The control group,
by the National Natural Science Foundation of China (grant numbers
without any enzyme, did not induce any detectable change for the PET
31961133017, 31961133018, 31961133019). These grants are part of
substrate surface morphology, whereas the free PETase caused grooves
“MIXed plastics biodegradation and UPcycling using microbial com
and folds, chiming with the previously reported literature [14,22,28,
munities” MIX-UP research project, which is a joint NSFC and EU H2020
29]. Surprisingly, PETase@Co3(PO4)2 could cause more severe erosion
collaboration. In Europe, MIX-UP has received funding from the Euro
on the PET surface than the free PETase with obviously eroded PET film
pean Union’s Horizon 2020 research and innovation program under
surface. To achieve the same degradation effect as PETase@Co3(PO4)2,
grant agreement No 870294.
free PETase needed a more prolonged time, as shown in Fig. 6e, that
slowly decreased the free PETase activity until it was lost. On the other
hand, the immobilized PETase@Co3(PO4)2 with high activity was Appendix A. Supporting information
consistent with the previous results shown in Fig. 5. The discovered
enzyme image attached to the PET surface with a degradation reaction Supplementary data associated with this article can be found in the
marked the occurred degradation (Fig. S6). online version at doi:10.1016/j.bej.2021.108205.
The degradation products were analyzed with PET particles and
amorphous PET film as the substrate, as indicated in Fig. 7. The amor References
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