van_veen_1998
van_veen_1998
van_veen_1998
dynamics calculations to find the lowest energy conformation followed by vinblastine and magnesium-ATP were indistinguishable. Blockers
another energy minimization to provide the final structure. of P-glycoprotein-mediated multidrug resistance also inhibited
Received 23 June; accepted 8 October 1997. LmrA-dependent drug resistance. Kinetic analysis of drug dis-
1. Stemmer, W. P. C. DNA shuffling by random fragmentation and reassembly: in vitro recombination sociation from LmrA expressed in plasma membranes of insect
for molecular evolution. Proc. Natl Acad. Sci. USA 91, 10747–10751 (1994). cells revealed the presence of two allosterically linked drug-
2. Stemmer, W. P. C. Searching sequence space. Bio/Technology 13, 549–553 (1995).
3. Stemmer, W. P. C. Rapid evolution of a protein in vitro by DNA shuffling. Nature 370, 389–391 (1994).
binding sites indistinguishable from those of P-glycoprotein.
4. Zhang, J., Dawes, G. & Stemmer, W. P. C. Evolution of a fucosidase from a galactosidase by DNA These findings have implications for the reversal of antibiotic
shuffling and screening. Proc. Natl Acac. Sci. USA 94, 4504–4509 (1997).
5. Crameri, A., Whitehorn, E., Tate, E. & Stemmer, W. P. C. Improved green fluorescent protein by
molecular evolution using DNA shuffling. Nature Biotech. 14, 315–319 (1996).
6. Crameri, A., Dawes, G., Rodriguez, E., Silver, S. & Stemmer, W. P. C. Molecular Evolution of an
arsenate detoxification pathway by DNA shuffling. Nature Biotech. 15, 436–438 (1997).
resistance in pathogenic microorganisms. Taken together, they
demonstrate that bacterial LmrA and human P-glycoprotein are
functionally interchangeable and that this type of multidrug-
resistance efflux pump is conserved from bacteria to man.
8
7. Moore, J. C. & Arnold, F. H. Directed evolution of a para-nitrobenzyl esterase for aqueous-organic
solvents. Nature Biotech. 14, 458–467 (1996). Using the polymerase chain reaction (PCR), the bacterial lmrA
8. Zhao, H. & Arnold, F. H. Optimization of DNA shuffling for high fidelity recombination. Nucleic coding sequence3 was cloned into a pCI-neo mammalian expression
Acids Res. 25, 1307–1308 (1997).
9. Lindberg, F. & Normark, S. Sequence of the Citrobacter freundii OS60 chromosomal ampC b- vector under the control of the human cytomegalovirus immedi-
lactamase gene. Eur. J. Biochem. 156, 441–445 (1986). ate–early enhancer/promoter region. A Kozak sequence9 was intro-
10. Galleni, M. et al. Sequence and comparative analysis of three Enterobacter cloacae ampC b-lactamase
genes and their products. Biochem. J. 250, 753–760 (1988).
duced at the ATG initiation codon of lmrA to enhance translational
11. Leiza, M. G. et al. Gene sequence and biochemical characterization of FOX-1 from Klebsiella efficiency. For control experiments, a transport-inactive LmrA
pneumoniae, a new AmpC-type plasmid-mediated b-lactamase with two molecular variants. \ita- protein was generated in the same vector by introducing a lysine-
Antimicrob. Agents Chemother. 38, 2150–2157 (1994).
12. Seoane, A., Francia, M. V. & Garcia Lobo, J. M. Nucleotide sequence of the ampC-ampR region from to-methionine substitution at position 388 (K388M)10 in the Walker
the chromosome of Yersinia enterocolitica. Antimicrob. Agents Chemother. 36, 1049–1052 (1992). A motif of the nucleotide-binding domain of the protein by site-
13. Stemmer, W. P. C., Crameri, A., Ha, K. D., Brennan, T. M. & Heyneker, H. L. Single-step PCR assembly
of a gene and a whole plasmid from large numbers of oligonucleotides. Gene 164, 49–53 (1995).
directed mutagenesis. Hexa-histidine tags were also added to the
14. Lobkovsky, E. et al. Evolution of enzyme activity: crystallographic structure at 2 Å resolution of amino termini of both the wild-type and K388M forms of LmrA.
cephalosporinase from the ampC gene of Enterobacter cloacae P99 and comparison with a class A
penicillinase. Proc. Natl Acad. Sci. USA 90, 11257–11261 (1993).
15. Kauffman, S. The Origins of Order (Oxford University Press, Oxford, 1993).
16. Eigen, M. Steps Towards Life: a Perspective on Evolution (Oxford University Press, Oxford, 1992).
A bacterial antibiotic-
resistance gene that
complements the human
multidrug-resistance
P-glycoprotein gene
Hendrik W. van Veen*, Richard Callaghan†,
Loredana Soceneantu†, Alessandro Sardini‡,
Wil N. Konings* & Christopher F. Higgins†
* Department of Microbiology, Groningen Biomolecular Sciences and
Biotechnology Institute, University of Groningen, Kerklaan 30, 9751 NN Haren,
The Netherlands
† Imperial Cancer Research Fund Laboratories and Cancer Research Campaign
Drug Resistance Group, Nuffield Department of Clinical Biochemistry,
Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford,
Oxford OX3 9DS, UK
‡ Department of Physiology, King’s College London, The Strand,
London WC2R 2LS, UK
.........................................................................................................................
Figure 2 Drug-resistance phenotypes generated by LmrA expression in GM0637 refers to the half-maximal inhibitory concentration. c, Daunomycin resistance of cells
human lung fibroblast cells. a, Survival of cells expressing the wild-type (squares) expressing wild-type LmrA in the absence (A) and presence (L) of the P-glycoprotein
and K388M (circles) forms of LmrA, at increasing concentrations of ethidium modulator CP100 2 356 and the K388M form of LmrA in the absence (X) and
bromide. b, Drug-survival characteristics of mock-transfected cells (grey bars), and presence (O) of CP100 2 356. d, Effect of individual modulators on the daunomycin-
cells expressing wild-type (white bars) and K388M (black bars) forms of LmrA. IC50, resistance of cells expressing the wild-type (A) and K388M (B) forms of LmrA.
Methods
Genetic manipulations. The lmrA gene was amplified from pGKLmrA3 by
PCR using the oligonucleotide 59-CTAGTCTAGACCACCATGCATCACCATC
ACCATCACGATGACGATGACAAAGCC-39 to introduce an XbaI site, Kozak
sequence9, hexa-histidine tag, and enterokinase cleavage site at the 59-end of
lmrA, and the oligonucleotide 59-ATGGCCGACGTCGACTTATTATTGACC
AACAGTCAATTGTTCTGAAACATATTTAGC-39 to introduce a SalI site at the
39-end of lmrA. The K388M mutant form of LmrA was constructed by site-
directed mutagenesis of lmrA using the Altered Sites System (Promega) and the
oligonucleotide 59-GCCTTTGCTGGTCCTTCTGGTGGTGGTATGTCAAC-
CATCTTCTCACTTTTAGAACG-39. The wild-type and mutant lmrA genes
were cloned into the mammalian expression vector pCIneo (Promega) as
1,796-base-pair (bp) XbaI–SalI fragments, giving pCHLmrA and
pCHLmrAK388M, respectively, and sequenced to ensure that only the intended
changes had been introduced.
The wild-type lmrA gene and human MDR1 gene11 were inserted into the
genome of the Autographa californica nuclear polyhedrosis virus under the
control of the polyhedrin promoter using the BacPAK baculovirus expression
system (Clontech). The wild-type lmrA gene was subcloned from pCIneo into
the transfer vector pBacPAK9 as a 1,807-bp XbaI–NotI fragment. The human
MDR1 gene, together with a Kozak sequence9, was subcloned from pKSMDR1
(D. Gill, unpublished data) into the transfer vector pBacPAK9 using flanking
BamHI and XhoI restriction sites. To generate recombinant baculovirus
carrying the lmrA or MDR1 gene, the permissive host insect cell line Sf913
was cotransfected with modified transfer vector and linearized Bsu36 I-digested
BacPAK6 viral DNA by lipofection (Clontech). After isolation of recombinant
baculovirus DNA, the lmrA and MDR1 genes were sequenced to confirm their
Figure 3 Wild-type LmrA protein functions as a multidrug transporter in GM0637 proper insertion into the baculovirus genome.
human lung fibroblast cells. a, [3H]Vinblastine accumulation by cells expressing Cell culture and membrane preparations. The human lung fibroblast cell
the wild-type (A) and K388M mutant (X) forms of LmrA. After 10 min of vinblastine line GM0637 was cultured in DMEM medium supplemented with 10% fetal
accumulation, verapamil was added to wild-type LmrA-expressing cells (K) to calf serum11. For transfection, lung fibroblast cells were seeded at a density of
inhibit LmrA-mediated vinblastin extrusion. b, Transport of Hoechst 33342 in cells 2 3 105 in a 35-mm dish and grown for 18 h to ,40% confluence. Cells were
expressing wild-type LmrA (blue). Fluorescence intensity is presented in arbitrary washed three times with serum-free Opti-MEM (Life Technologies). 5 mg of
units (a.u.). At the time indicated by the arrow, reserpine was added to one of the plasmid DNA in 1 ml Opti-MEM was gently mixed with 25 mg of Lipofectin
incubations (red) to inhibit LmrA-mediated extrusion of Hoechst 33342. reagent (Life Technologies) in 1 ml of Opti-MEM, in a polystyrene tube. After
Figure 4 Pharmacological properties of wild-type LmrA and human P-glycopro- containing (K) and control (X) plasma membranes, as a function of the free
tein expressed in insect cell membranes. a, Effect of the magnesium-ATP concentration of [3H]vinblastine. c, Effect of P-glycoprotein modulators on the
concentration on the basal ATPase activity of LmrA in the absence (A) or equilibrium binding of [3H]vinblastine to wild-type LmrA. d, Dissociation kinetics
presence of 50 mM verapamil (B) or 2 mM sodium vanadate (X), and of P- of [3H]vinblastine from wild-type LmrA in the absence (A) and presence of
glycoprotein in the absence (K) or presence of 50 mM verapamil (O). b, Equilibrium CP100 2 356 (K) or nicardipine (W).
binding of [3H]vinblastine to wild-type LmrA-containing (A), P-glycoprotein-