1st Sem Prelims Chromatography Plenary Discussion
1st Sem Prelims Chromatography Plenary Discussion
1st Sem Prelims Chromatography Plenary Discussion
AND IDENTIFICATION OF
AMINO ACIDS
AREVALO | CUNANAN | DESAI | GENARO | LEE
BONDOC | DE GUZMAN | ESCOTO | KACHHADIYA | LLANERA
OBJECTIVES
• At the end of the discussion, the student should be able to:
• Define chromatography
• Identify the different types of protein separation
• Discuss the different types of chromatography
• Discuss the general principles of IEC and Paper chromatography
• Definition
• Procedure
• Application
• Discuss the anticipated results and present obtained results.
• Explain possible reasons and sources of error for the deviation of the obtained results from the
anticipated results
• Discuss a journal on IEC
INTRODUCTION
SIGNIFICANCE OF PROTEIN SEPARATION
2. Differential centrifugation
• Subcellular functions
• Specific organelle
TYPES OF PROTEIN
SEPARATION
TYPES OF PROTEIN SEPARATION
• According to Size:
• Dialysis
• Ultracentrifugation
• According to Charge:
• Electrophoresis
• According to Solubility:
• Salting out
• Isoelectric Precipitation
DIALYSIS
ACCORDING TO SIZE
• Types of Electrophoresis:
• SDS – PAGE
• Isoelectric focusing
• Two-dimensional electrophoresis (combination of SDS-PAGE +
Isoelectric focusing)
SALTING OUT
ACCORDING TO SOLUBILITY
3. Affinity Chromatography
8. Paper Chromatography
COLUMN CHROMATOGRAPHY
• A porous solid (stationary
phase) material is placed in
a column and a buffered
solution migrates through it
• Protein (Mobile Phase)
• Individual proteins migrate
faster or more slowly
through the column
depending on their
properties
SIZE EXCLUSION CHROMATOGRAPHY
• “Gel filtration”
• Separation according to
size
• Large proteins emerge
from the column sooner
than the small ones
• Solid phase
– Cross-linked polymer
beads with engineered
pores or cavities
AFFINITY CHROMATOGRAPHY
• Affinity affected by pH
• As the length of the
column increases,
resolution of 2 types of
proteins is improved,
rate of protein flow
usually decreases
• Increased time spent on
the column, decline in
resolution
ION EXCHANGE CHROMATOGRAPHY
APPLICATION
B. Column Packing
C. Column Equilibration
• Sample Application
D. Elution
B. Column Packing
C. Column Equilibration
1. Using a 10mL pipette, gently introduce 0.1M citrate buffer (pH 3.4) until it
reaches 0.0mL mark.
2. Adjust the flow of the eluate such that 1mL of eluate is collected in a time span
of 1 minute.
3. Run down as much of the buffer through the column at this specified flow rate
until the level of the buffer has dropped to 0.1mL above the top of the column.
4. Prepare and label a set of 35 tubes with A and B series.
Sample Application
• Introduction of 2mL of unknown amino acid mixture.
• Allow the amino acid to flow into the column until the level of liquid is at 0.1mL
mark.
ION EXCHANGE CHROMATOGRAPHY
PROCEDURE
D. Elution
• Three buffers were used:
• Buffer 1: 0.1M citrate buffer, pH 3.4 for test tubes 1a-12a
• Buffer 2: 0.1M citrate buffer, pH 6.2 for test tubes 13a-24a
• Buffer 3: 0.1M sodium carbonate, pH 11 for test tubes 25a-35a
Anticipated Results:
• Human Error
• Improper pipeting
• Inaccurate buffer measurements
• Insufficient addition of unknown
• Inaccurate flow rate (may be too fast or too slow)
• Experimental Error
• Contamination of reagents
• Improper buffer concentration
• Insufficient protein concentration
ION EXCHANGE CHROMATOGRAPHY
POSSIBLE SOURCES OF ERROR
• Instrumental Error
• Malfunction of the cation exchanger
• Dirty glasswares and equipments
• Drying of resin
• Vacuum pressure is too high
PAPER
CHROMATOGRAPHY
PAPER CHROMATOGRAPHY
DEFINITION
4. Spot the origin points with sample from each 10x on the same spot if
Ninhydrin (+) survey tubes were dark; if lighter, spot 15x
PAPER CHROMATOGRAPHY
PROCEDURE
4. Mark the solvent front with pencil and dry the paper.
PAPER CHROMATOGRAPHY
PROCEDURE
Anticipated Results:
• In development
• Improper adjustment of the paper in the tank leads to this error so the paper
should be placed vertically stable and at the right distance.
• Inaccurate computation of Rf values.
• In detection
• Spraying method can greatly affect the final results leading to inaccurate
measurements of distance.
DATA & RESULTS
ION EXCHANGE CHROMATOGRAPHY
GROUPS 1 & 2
NINHYDRIN NINHYDRIN NINHYDRIN
BUFFER 1 RESULT BUFFER 2 BUFFER 3
RESULT RESULT
1A +4 13A +2 25A +2
2A +2 14A +2 26A +2
3A +4 15A +2 27A +2
4A +4 16A +4 28A +4
5A +2 17A +2 29A +4
6A +2 18A +4 30A +2
7A +2 19A +4 31A +2
8A +2 20A +2 32A +2
9A +2 21A +2 33A +2
10A +2 22A +2 34A +2
11A +2 23A +2 35A +4
12A +2 24A +2
ION EXCHANGE CHROMATOGRAPHY
GROUPS 3 & 4
NINHYDRIN NINHYDRIN NINHYDRIN
BUFFER 1 RESULT BUFFER 2 RESULT BUFFER 3 RESULT
1A +1 13A - 25A +2
2A +4 14A +1 26A +2
3A +1 15A +4 27A +4
4A +1 16A +4 28A +3
5A +1 17A +3 29A +3
6A +2 18A +3 30A +2
7A +2 19A +3 31A +2
8A +2 20A +2 32A +2
9A +2 21A +2 33A +2
10A +2 22A +2 34A +2
11A +3 23A +2 35A -
12A +3 24A +2
ION EXCHANGE CHROMATOGRAPHY
GROUPS 5 & 6
NINHYDRIN NINHYDRIN NINHYDRIN
BUFFER 1 RESULT BUFFER 2 RESULT BUFFER 3 RESULT
1A +1 13A +1 25A +4
2A +2 14A +2 26A +4
3A +4 15A +3 27A +4
4A +4 16A +4 28A +3
5A +4 17A +4 29A +3
6A +3 18A +4 30A +1
7A +1 19A +3 31A +2
8A +2 20A +3 32A +2
9A +1 21A +3 33A +1
10A +2 22A +3 34A +3
11A +2 23A +3 35A +3
12A +1 24A +3
ION EXCHANGE CHROMATOGRAPHY
GROUPS 7 & 8
NINHYDRIN NINHYDRIN NINHYDRIN
BUFFER 1 RESULT BUFFER 2 RESULT BUFFER 3 RESULT
1A +4 13A - 25A +3
2A +4 14A - 26A +3
3A +4 15A +2 27A +3
4A +3 16A +2 28A +4
5A +3 17A +4 29A +3
6A +3 18A +4 30A +2
7A +3 19A +4 31A +2
8A +3 20A +4 32A +3
9A +1 21A +3 33A +3
10A +1 22A +3 34A +2
11A +1 23A +3 35A +1
12A +1 24A +3
ION-EXCHANGE
CHROMATOGRAPHY RESULTS
GROUPS 1&2 GROUPS 3&4 GROUPS 5&6 GROUPS 7&8 GROUPS 9&10
BUFFER 1
1A +4 +1 +1 +4 +4
2A +2 +4 +2 +4 +4
3A +4 +1 +4 +4 +4
4A +4 +1 +4 +3 +3
5A +2 +1 +4 +2 +3
6A +2 +2 +3 +3 +3
7A +2 +2 +1 +2 +3
8A +2 +2 +2 +2 +3
9A +2 +2 +1 +1 +1
10A +2 +2 +2 +3 +1
11A +2 +3 +2 +1 +1
12A +2 +3 +1 +1 +1
ION-EXCHANGE
CHROMATOGRAPHY RESULTS
GROUPS 1&2 GROUPS 3&4 GROUPS 5&6 GROUPS 7&8 GROUPS 9&10
BUFFER 2
13A +2 - +1 +1 -
14A +2 +1 +2 +4 -
15A +2 +4 +3 +4 +2
16A +4 +4 +4 +4 +2
17A +2 +3 +4 +2 +4
18A +4 +3 +4 +2 +4
19A +4 +3 +3 +2 +4
20A +2 +2 +3 +1 +4
21A +2 +2 +3 +2 +3
22A +2 +2 +3 +2 +3
23A +2 +2 +3 +1 +3
24A +2 +2 +3 +1 +3
ION-EXCHANGE
CHROMATOGRAPHY RESULTS
BUFFER 3 GROUPS 1&2 GROUPS 3&4 GROUPS 5&6 GROUPS 7&8 GROUPS 9&10
25A +2 +2 +4 +3 +3
26A +2 +2 +4 +4 +3
27A +2 +4 +4 +4 +3
28A +4 +3 +3 +3 +4
29A +4 +3 +3 +4 +3
30A +2 +2 +1 +1 +2
31A +2 +2 +2 +2 +2
32A +2 +2 +2 +2 +3
33A +2 +2 +1 +3 +3
34A +2 +2 +3 0 +2
35A +4 - +3 0 +1
PAPER CHROMATOGRAPHY
GROUPS 1 & 2
Distance
Test tube # travelled
Computed Rf Amino Acid
3 6 cm 0.18 Glycine
Glutamic
11a 5 cm 0.15 Acid
Glutamic
12a 5 cm 0.15 Acid
Aspartic
2a 5.6 cm 0.14
Acid
Aspartic
3a 5.5 cm 0.14
Acid
18a 2.8 cm 0.07 Histidine
W. G. HARRIS
One of the most consistent features of helminth immunity is the
ability of these parasites to stimulate a high titre reagin response. Such
antibody has been detected in a wide range of helminth host-parasite
systems, including schistosome infections of mice, rats, rabbits,
monkeys and man. This powerful immunological effector mechanism
must, therefore, play a significant role in the ultimate host-parasite
relationship, and a study of parasite allergens should yield information
relevant to the fundamental understanding of this relationship.
SCHISTOSOMIASIS
• Remains one of the most prevalent neglected tropical diseases
• It is estimated that over 240 million people are infected, with about 700
million people worldwide at risk of infection
• Preparation of antigens
• Separation on DEAE-cellulose
– Fraction SAIGl/Ul G-200 high molecular weight
acid insoluble fraction was further separated by ion-
exchange chromatography on DEAE-cellulose
MATERIALS AND METHODS
• Separation on CM-cellulose
– Fraction SASGI/Ul-the Sephadex G-200 high
molecular weight acid-soluble peak and fraction
SASG3-the Sephadex G- 100 medium molecular
weight peak-were further separated by ion-exchange
chromatography on CM-cellulose