Yeast evolutionary genomics (Q37766086)

22 August 2017

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title

Yeast evolutionary genomics (English)

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22 August 2017

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Bernard Dujon

1

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22 August 2017

publication date

1 July 2010

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22 August 2017

published in

Nature Reviews Genetics

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22 August 2017

volume

11

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22 August 2017

issue

7

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22 August 2017

page(s)

512-524

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22 August 2017

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Three new species in the Saccharomyces sensu stricto complex: Saccharomyces cariocanus, Saccharomyces kudriavzevii and Saccharomyces mikatae

21 January 2018

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The mismatch repair system reduces meiotic homeologous recombination and stimulates recombination-dependent chromosome loss

21 January 2018

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The evolution of gene duplications: classifying and distinguishing between models

21 January 2018

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Parallel evolution by gene duplication in the genomes of two unicellular fungi

21 January 2018

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Body plan evolution of ascomycetes, as inferred from an RNA polymerase II phylogeny

31 March 2020

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31 March 2020

The tree of eukaryotes

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Why are there still over 1000 uncharacterized yeast genes?

31 March 2020

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The genome sequence of Schizosaccharomyces pombe

31 March 2020

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Population genetics of the wild yeast Saccharomyces paradoxus

31 March 2020

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Population structure and gene evolution in Saccharomyces cerevisiae

31 March 2020

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Population genomic analysis of outcrossing and recombination in yeast

31 March 2020

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Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle

31 March 2020

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The spatial scale of genetic differentiation in a model organism: the wild yeast Saccharomyces paradoxus

31 March 2020

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Allopatric divergence, secondary contact, and genetic isolation in wild yeast populations.

31 March 2020

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Population genomics of domestic and wild yeasts

31 March 2020

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Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae

31 March 2020

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Remarkably ancient balanced polymorphisms in a multi-locus gene network

31 March 2020

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Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus

31 March 2020

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Genome sequence of the lager brewing yeast, an interspecies hybrid

31 March 2020

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Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing.

31 March 2020

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Chimeric genomes of natural hybrids of Saccharomyces cerevisiae and Saccharomyces kudriavzevii

31 March 2020

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Saccharomyces sensu stricto as a model system for evolution and ecology

31 March 2020

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31 March 2020

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Unique hybrids between the fungal pathogens Cryptococcus neoformans and Cryptococcus gattii

31 March 2020

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Recent allopolyploid origin ofZygosaccharomyces rouxii strain ATCC 42981

31 March 2020

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Hybrid speciation in experimental populations of yeast.

31 March 2020

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Recombination between homoeologous chromosomes of lager yeasts leads to loss of function of the hybrid GPH1 gene

31 March 2020

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Unusual composition of a yeast chromosome arm is associated with its delayed replication

31 March 2020

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Exploring contradictory phylogenetic relationships in yeasts

31 March 2020

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Engineering evolution to study speciation in yeasts.

31 March 2020

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Sequence diversity, reproductive isolation and species concepts in Saccharomyces

31 March 2020

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Chromosomal evolution in Saccharomyces

31 March 2020

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Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species.

31 March 2020

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Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts

31 March 2020

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The Origin of Interspecific Genomic Incompatibility via Gene Duplication

31 March 2020

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Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus.

31 March 2020

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Prezygotic reproductive isolation between Saccharomyces cerevisiae and Saccharomyces paradoxus

31 March 2020

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Mate choice assays and mating propensity differences in natural yeast populations.

31 March 2020

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Turning a hobby into a job: how duplicated genes find new functions

31 March 2020

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Comparative genomics of protoploid Saccharomycetaceae

31 March 2020

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Genome-wide computational prediction of tandem gene arrays: application in yeasts

31 March 2020

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Tandem gene amplification mediates copper resistance in yeast

31 March 2020

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Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII

31 March 2020

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Genome evolution in yeasts

31 March 2020

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A family of glycosylphosphatidylinositol-linked aspartyl proteases is required for virulence of Candida glabrata

31 March 2020

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Genomic polymorphism in the population of Candida glabrata: Gene copy-number variation and chromosomal translocations

31 March 2020

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An evolutionary scenario for one of the largest yeast gene families

31 March 2020

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The origins and impact of primate segmental duplications

31 March 2020

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Structure ofKluyveromyces lactissubtelomeres: duplications and gene content

31 March 2020

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A prominent role for segmental duplications in modeling eukaryotic genomes

31 March 2020

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Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

31 March 2020

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Spontaneous duplications in diploid Saccharomyces cerevisiae cells

31 March 2020

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The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast

31 March 2020

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Stability of large segmental duplications in the yeast genome

31 March 2020

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Amplification of histone genes by circular chromosome formation in Saccharomyces cerevisiae

31 March 2020

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Segmental duplications arise from Pol32-dependent repair of broken forks through two alternative replication-based mechanisms

31 March 2020

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Molecular evidence for an ancient duplication of the entire yeast genome

31 March 2020

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The Ashbya gossypii Genome as a Tool for Mapping the Ancient Saccharomyces cerevisiae Genome

31 March 2020

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Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

31 March 2020

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Genomic analysis of the basal lineage fungus Rhizopus oryzae reveals a whole-genome duplication

31 March 2020

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The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication

31 March 2020

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Loss of protein interactions and regulatory divergence in yeast whole-genome duplicates

31 March 2020

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The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

31 March 2020

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After the duplication: gene loss and adaptation in Saccharomyces genomes

31 March 2020

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Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

31 March 2020

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Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome

31 March 2020

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Gene-interleaving patterns of synteny in the Saccharomyces cerevisiae genome: are they proof of an ancient genome duplication event?

31 March 2020

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Evolution of gene order in the genomes of two related yeast species

31 March 2020

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Gene relics in the genome of the yeast Saccharomyces cerevisiae

31 March 2020

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Reorganization of adjacent gene relationships in yeast genomes by whole-genome duplication and gene deletion

31 March 2020

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A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast

31 March 2020

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31 March 2020

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Consistent patterns of rate asymmetry and gene loss indicate widespread neofunctionalization of yeast genes after whole-genome duplication

31 March 2020

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Evolution of cis-regulatory elements in duplicated genes of yeast

31 March 2020

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Rapid evolution of expression and regulatory divergences after yeast gene duplication

31 March 2020

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Natural history and evolutionary principles of gene duplication in fungi

31 March 2020

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Functional diversification of duplicate genes through subcellular adaptation of encoded proteins

31 March 2020

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Pervasive and persistent redundancy among duplicated genes in yeast

31 March 2020

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Recovery of a function involving gene duplication by retroposition in Saccharomyces cerevisiae

31 March 2020

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Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts

31 March 2020

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Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns

31 March 2020

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Comparative genomic analysis of fungal genomes reveals intron-rich ancestors

31 March 2020

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Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution

31 March 2020

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Evolution of pathogenicity and sexual reproduction in eight Candida genomes

31 March 2020

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Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae

31 March 2020

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A genome-wide view of the spectrum of spontaneous mutations in yeast.

31 March 2020

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Evidence for domesticated and wild populations of Saccharomyces cerevisiae

31 March 2020

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Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray

31 March 2020

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Origin and fate of pseudogenes in Hemiascomycetes: a comparative analysis

31 March 2020

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Prevalence of small inversions in yeast gene order evolution

31 March 2020

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Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages

31 March 2020

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Insertion of horizontally transferred genes within conserved syntenic regions of yeast genomes

31 March 2020

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Evolution of mutational robustness in the yeast genome: a link to essential genes and meiotic recombination hotspots

31 March 2020

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Loss of heterozygosity in commensal isolates of the asexual diploid yeast Candida albicans

31 March 2020

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Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans

31 March 2020

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A genetic screen for increased loss of heterozygosity in Saccharomyces cerevisiae

31 March 2020

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Evolution in Candida albicans populations during a single passage through a mouse host

31 March 2020

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Molecular genetic study of introgression between Saccharomyces bayanus and S. cerevisiae.

31 March 2020

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A catalog of neutral and deleterious polymorphism in yeast

31 March 2020

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A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression in Saccharomyces cerevisiae

31 March 2020

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Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118.

31 March 2020

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Recent evolution of the human pathogen Cryptococcus neoformans by intervarietal transfer of a 14-gene fragment

31 March 2020

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Horizontal gene transfer promoted evolution of the ability to propagate under anaerobic conditions in yeasts

31 March 2020

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Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae

31 March 2020

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The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering

31 March 2020

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Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789.

31 March 2020

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Genome survey sequencing of the wine spoilage yeast Dekkera (Brettanomyces) bruxellensis

31 March 2020

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Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis

31 March 2020

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Acquisition of prokaryotic genes by fungal genomes

31 March 2020

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Fusion and fission of genes define a metric between fungal genomes

31 March 2020

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De novo origination of a new protein-coding gene in Saccharomyces cerevisiae

31 March 2020

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A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand

31 March 2020

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Promiscuous DNA in the nuclear genomes of hemiascomycetous yeasts

31 March 2020

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Mitochondrial DNA repairs double-strand breaks in yeast chromosomes

31 March 2020

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Evolutionary capture of viral and plasmid DNA by yeast nuclear chromosomes

31 March 2020

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The evolution of novel fungal genes from non-retroviral RNA viruses

31 March 2020

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Whole-genome sequencing of a laboratory-evolved yeast strain

31 March 2020

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31 March 2020

RNAi in budding yeast

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Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp

31 March 2020

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The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications

31 March 2020

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Symmetry breaking in the life cycle of the budding yeast

31 March 2020

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Role of spindle asymmetry in cellular dynamics.

31 March 2020

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A mechanism for asymmetric segregation of age during yeast budding

31 March 2020

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MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast

31 March 2020

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Robust spatial sensing of mating pheromone gradients by yeast cells

31 March 2020

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Evolution of the hemiascomycete yeasts: on life styles and the importance of inbreeding

31 March 2020

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Evidence for autotetraploidy associated with reproductive isolation in Saccharomyces cerevisiae: towards a new domesticated species

31 March 2020

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Mechanistic plasticity of sexual reproduction and meiosis in the Candida pathogenic species complex

31 March 2020

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Comparative Genomics in Hemiascomycete Yeasts: Evolution of Sex, Silencing, and Subtelomeres

31 March 2020

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Alpha3, a transposable element that promotes host sexual reproduction

31 March 2020

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Fission yeast mating-type switching: programmed damage and repair

31 March 2020

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Phylogenetic relationships among yeasts of the ? complex? determined from multigene sequence analyses

31 March 2020

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A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

31 March 2020

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Re-examining the phylogeny of clinically relevant Candida species and allied genera based on multigene analyses

31 March 2020

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A molecular timescale of eukaryote evolution and the rise of complex multicellular life

31 March 2020

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Sequencing and comparison of yeast species to identify genes and regulatory elements

31 March 2020

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Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

31 March 2020

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Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies

31 March 2020

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The (strain CBS4732) genome sequencing and analysis

31 March 2020

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Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

31 March 2020

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The diploid genome sequence of Candida albicans

31 March 2020

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Genome sequence of the recombinant protein production host Pichia pastoris

31 March 2020

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Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris.

31 March 2020

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The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans

31 March 2020

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Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens

31 March 2020

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Horizontal transfer of genetic material among Saccharomyces yeasts

31 March 2020

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PubMed

https://pubmed.ncbi.nlm.nih.gov/20559329

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dating divergences in the Fungal Tree of Life: review and new analyses

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20559329

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The Hansenula polymorpha (strain CBS4732) genome sequencing and analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20559329

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG2811

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22 August 2017

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