1.6.0 (November 28, 2020)

New feature release in the 1.6.x series.

In addition to the usual bug fixes, significant reductions were made
in workflow startup costs.

  * FIX: Canonicalize environment dicts to strings in Windows (nipy#3267)
  * FIX: Purge deprecated exception content accesses (nipy#3272)
  * FIX: Handle changes in CLI structure of mrtrix3.DWIBiasCorrect (nipy#3248)
  * FIX: EpiReg changed to not list certain outputs when 'wmseg' input is specified (nipy#3265)
  * FIX: CI issues (nipy#3262)
  * FIX: SPM SliceTiming must accept either Int or float for ref_slice and sli… (nipy#3255)
  * FIX: Raise version error when using ``-g`` with ``antsAI`` < 2.3.0 (nipy#3256)
  * FIX: No longer depending on pydotplus (networkx >=2.0 update) (nipy#3251)
  * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (nipy#3236)
  * ENH: Handle unavailable traits due to version differences (nipy#3273)
  * ENH: Optimize workflow.run performance (nipy#3260)
  * DOC: Remove myself (@mr-c) from the zenodo metadata (nipy#3271)

1.5.1 (August 16, 2020)

Bug-fix release in the 1.5.x series.

This release includes small updates to ANTs utilities that lie somewhere
between bug fixes and enhancements.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.1?closed=1>`__)

  * FIX: Warn for min/max_ver traits when tool version can't be parsed (nipy#3241)
  * FIX: Serialize all interface arguments when exporting workflows (nipy#3240)
  * FIX: Permit identity transforms in list of transforms given to ants.ApplyTransforms (nipy#3237)
  * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (nipy#3236)
  * DOC: Skip BIDSDataGrabber doctest if pybids is missing (nipy#3224)

1.5.0 (June 03, 2020)

New feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package:
`niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

  * FIX: volterra_expansion_order documentation error (nipy#3213)
  * FIX: BET incorrect output paths (nipy#3214)
  * FIX: Terminal output in ``report.rst`` spreads one line per character (nipy#3220)
  * FIX: Allow parsing freesurfer 7 version string (nipy#3216)
  * FIX: Use PackageInfo to get NiftyReg version (nipy#3194)
  * FIX: Partial rollback of N4BiasFieldCorrection (nipy#3188)
  * FIX: ANTs' tools maintenance overhaul (nipy#3180)
  * FIX: load_resultfile crashes if open resultsfile from crashed job (nipy#3182)
  * FIX: FSL model.py make multiple F-tests (nipy#3166)
  * ENH: Restore ants.legacy interfaces (nipy#3222)
  * ENH: Add ``"TruncateImageIntensity"`` operation to ``ants.utils.Image.Math`` (nipy#3210)
  * ENH: SPM NewSegment multi-channel segmentation (nipy#3162)
  * ENH: Add reverse-ordered transform lists to ants.Registration outputs (nipy#3192)
  * ENH: Improve workflow connect performance (nipy#3184)
  * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (nipy#3176)
  * ENH: Detect values for EulerNumber interface (nipy#3173)
  * ENH: Remove examples from repository (nipy#3172)
  * TEST: Clean up tests (nipy#3195)
  * TEST: Mock terminal output before testing changing default value (nipy#3193)
  * REF: make invocations of python and pytest consistent with the one used/desired python (nipy#3208)
  * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (nipy#3177)
  * REF: Removed all uses of numpy_mmap (nipy#3121)
  * DOC: Sphinx 3 compatibility (nipy#3206)
  * DOC: Update links, typos in contributing guide (nipy#3160)
  * DOC: Update SelectFiles docstring to match actual behavior (nipy#3041)
  * DOC: Updated .zenodo.json file (nipy#3167)
  * DOC: Update .zenodo.json (nipy#3165)
  * MNT: Permit recent nilearns (nipy#2841)
  * MNT: Test Python 3.8 (nipy#3154)
  * MNT: Restore ReadTheDocs (nipy#3207)
  * MNT: Update Zenodo ordering based on commit count (nipy#3169)

1.5.0-rc1

Release candidate for the new feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package:
`niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

  * FIX: Partial rollback of N4BiasFieldCorrection (nipy#3188)
  * FIX: ANTs' tools maintenance overhaul (nipy#3180)
  * FIX: load_resultfile crashes if open resultsfile from crashed job (nipy#3182)
  * FIX: FSL model.py make multiple F-tests (nipy#3166)
  * ENH: Improve workflow connect performance (nipy#3184)
  * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (nipy#3176)
  * ENH: Detect values for EulerNumber interface (nipy#3173)
  * ENH: Remove examples from repository (nipy#3172)
  * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (nipy#3177)
  * REF: Removed all uses of numpy_mmap (nipy#3121)
  * DOC: Update links, typos in contributing guide (nipy#3160)
  * DOC: Update SelectFiles docstring to match actual behavior (nipy#3041)
  * DOC: Updated .zenodo.json file (nipy#3167)
  * DOC: Update .zenodo.json (nipy#3165)
  * MNT: Update Zenodo ordering based on commit count (nipy#3169)

1.4.2 (February 14, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/1.4.2?closed=1

* FIX: Allow ``fsl.MultipleRegressDesign`` to create multiple F-tests (nipy#3166)
* FIX: Reliably parse SGE job IDs in the presence of warnings (nipy#3168)
* FIX: Move TraitType import, handle API change for NoDefaultSpecified (nipy#3159)

1.4.1 (January 27, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/1.4.1?closed=1

* FIX: DataSink to S3 buckets (nipy#3130)
* FIX: improve version checking for nodes of workflows (nipy#3152)
* FIX: mapnode to generate result file when crashes in single node mode (nipy#3143)
* FIX: Can't seem to import workflows from niflows in CircleCI (nipy#3134)
* FIX: Repair aftermath of docs refactor (nipy#3133)
* FIX: change ANTS number_of_time_steps from Float to Int (nipy#3118)
* DOC: Revise generation of examples to work in RTD (nipy#3132)
* DOC: Bring examples generation back to ``doc/conf.py`` (nipy#3131)
* DOC: Documentation overhaul (nipy#3124)
* DOC: Deep revision of documentation building (nipy#3120)
* DOC: Deduplicate code for Sphinx's APIdoc generation (nipy#3119)
* MNT: Update requirements.txt post-1.4 (nipy#3153)

1.3.2 (January 06, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/36?closed=1

* FIX: Handle crashes of single-element iterables in MapNodes (nipy#3144)

1.4.0 (December 20, 2019)

Full changelog: https://github.com/nipy/nipype/milestone/37?closed=1

* FIX: Mark strings containing regex escapes as raw (nipy#3106)
* ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (nipy#3099)
* ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (nipy#3073)
* ENH: Add options and outputs to ``fsl.Eddy`` interface (nipy#3034)
* ENH: Add skull_file output to fsl.BET interface (nipy#3095)
* RF: Drop various remaining compatibilities for Python < 3.5 (nipy#2831)
* DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (nipy#3115)
* DOC: Miss underline before cmd in example code (nipy#3107)
* STY: Black (nipy#3096)
* MNT: Set junit_family to suppress pytest warning (nipy#3111)
* MNT: Fix Dorota Jarecka ORCID (nipy#3100)
* MNT: Drop Python 2 support (nipy#2654)

1.3.1 (November 12, 2019)

* FIX: Restore checking traits or bunch (nipy#3094)

1.3.0 (November 11, 2019)

Full changelog: https://github.com/nipy/nipype/milestone/34?closed=1

* FIX: Fixed typo in QwarpInputSpec Trait description (nipy#3079)
* FIX: Restore ``AFNICommand._get_fname``, required by some interfaces (nipy#3071)
* FIX: Remove asynchronous chdir callback (nipy#3060)
* FIX: Minimize scope for directory changes while loading results file (nipy#3061)
* ENH: Minimize the number of calls to ``_load_results`` when populating inputs (nipy#3075)
* ENH: Refactor savepkl/loadpkl - add a window for loadpkl to wait for the file (nipy#3089)
* ENH: Add "ExportFile" interface as simple alternative to "DataSink" (nipy#3054)
* ENH: Allow nipype.cfg in cwd to be read even if ~/.nipype does not exist (nipy#3072)
* ENH: Add precommit information for contributors and pre-commit style (nipy#3063)
* ENH: Delay etelemetry for non-interactive sessions, report bad versions (nipy#3049)
* ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (nipy#30)
* RF: Provide functions to augment old Path.mkdir, Path.resolve methods (nipy#3050)
* RF: Redirect nipype.workflows to niflow.nipype1.workflows (nipy#3067)
* TST: Skip dcm2niix test if data fails to download (nipy#3059)
* TST: dcm2niix test fix (nipy#3058)
* MAINT: Drop Python 3.4 support (nipy#3062)
* CI: ``make specs`` on Travis (nipy#3066)